60S ribosomal protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom13g18920 |
| rosa_multiflora | Rmu_co8287205.1_g000001 Rmu_co8313979.1_g000001 |
| rosa_samantha | Rh4CG054000 Rh4CG057600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 93 |
| AcoI | YGGCCR | 1 cut(s) | 210 |
| AcsI | RAATTY | 1 cut(s) | 19 |
| AgsI | TTSAA | 2 cut(s) | 25, 199 |
| AjnI | CCWGG | 1 cut(s) | 231 |
| AluBI | AGCT | 3 cut(s) | 135, 151, 202 |
| AluI | AGCT | 3 cut(s) | 135, 151, 202 |
| AoxI | GGCC | 3 cut(s) | 171, 210, 229 |
| ApeKI | GCWGC | 1 cut(s) | 104 |
| ApoI | RAATTY | 1 cut(s) | 19 |
| AspS9I | GGNCC | 2 cut(s) | 67, 171 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BalI | TGGCCA | 1 cut(s) | 212 |
| BbvI | GCAGC | 1 cut(s) | 91 |
| BciT130I | CCWGG | 1 cut(s) | 233 |
| BglII | AGATCT | 1 cut(s) | 8 |
| BisI | GCNGC | 2 cut(s) | 93, 105 |
| BlsI | GCNGC | 2 cut(s) | 94, 106 |
| Bme1390I | CCNGG | 1 cut(s) | 233 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 171 |
| BmiI | GGNNCC | 2 cut(s) | 68, 69 |
| BmrFI | CCNGG | 1 cut(s) | 233 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 19, 51 |
| Bse3DI | GCAATG | 1 cut(s) | 102 |
| BseBI | CCWGG | 1 cut(s) | 233 |
| BseMI | GCAATG | 1 cut(s) | 102 |
| BseXI | GCAGC | 1 cut(s) | 91 |
| BshFI | GGCC | 3 cut(s) | 173, 212, 231 |
| BslFI | GGGAC | 1 cut(s) | 53 |
| BsmFI | GGGAC | 1 cut(s) | 53 |
| BsnI | GGCC | 3 cut(s) | 173, 212, 231 |
| Bsp143I | GATC | 3 cut(s) | 8, 190, 216 |
| BspACI | CCGC | 1 cut(s) | 93 |
| BspANI | GGCC | 3 cut(s) | 173, 212, 231 |
| BspLI | GGNNCC | 2 cut(s) | 68, 69 |
| BsrDI | GCAATG | 1 cut(s) | 102 |
| BssMI | GATC | 3 cut(s) | 8, 190, 216 |
| Bst2UI | CCWGG | 1 cut(s) | 233 |
| BstC8I | GCNNGC | 2 cut(s) | 90, 229 |
| BstDEI | CTNAG | 1 cut(s) | 273 |
| BstKTI | GATC | 3 cut(s) | 11, 193, 219 |
| BstMBI | GATC | 3 cut(s) | 8, 190, 216 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 101 |
| BstNI | CCWGG | 1 cut(s) | 233 |
| BstSCI | CCNGG | 1 cut(s) | 231 |
| BstV1I | GCAGC | 1 cut(s) | 91 |
| BstX2I | RGATCY | 1 cut(s) | 8 |
| BstYI | RGATCY | 1 cut(s) | 8 |
| BsuRI | GGCC | 3 cut(s) | 173, 212, 231 |
| BtsIMutI | CAGTG | 1 cut(s) | 39 |
| Cac8I | GCNNGC | 2 cut(s) | 90, 229 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 171 |
| CviJI | RGCY | 9 cut(s) | 31, 104, 135, 151, 173, 202, 212, 227, 231 |
| CviKI_1 | RGCY | 9 cut(s) | 31, 104, 135, 151, 173, 202, 212, 227, 231 |
| DdeI | CTNAG | 1 cut(s) | 273 |
| DpnI | GATC | 3 cut(s) | 10, 192, 218 |
| DpnII | GATC | 3 cut(s) | 8, 190, 216 |
| EaeI | YGGCCR | 1 cut(s) | 210 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 231 |
| FaiI | YATR | 1 cut(s) | 206 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 121, 153 |
| FaqI | GGGAC | 1 cut(s) | 53 |
| Fnu4HI | GCNGC | 2 cut(s) | 93, 105 |
| Fsp4HI | GCNGC | 2 cut(s) | 93, 105 |
| GluI | GCNGC | 2 cut(s) | 93, 105 |
| HaeIII | GGCC | 3 cut(s) | 173, 212, 231 |
| HindIII | AAGCTT | 2 cut(s) | 149, 200 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy188I | TCNGA | 1 cut(s) | 162 |
| Hpy188III | TCNNGA | 4 cut(s) | 25, 61, 220, 238 |
| HpyAV | CCTTC | 2 cut(s) | 73, 162 |
| HpyCH4V | TGCA | 1 cut(s) | 251 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 101 |
| HpyF3I | CTNAG | 1 cut(s) | 273 |
| KflI | GGGWCCC | 1 cut(s) | 67 |
| Kzo9I | GATC | 3 cut(s) | 8, 190, 216 |
| LpnPI | CCDG | 3 cut(s) | 213, 218, 245 |
| Lsp1109I | GCAGC | 1 cut(s) | 91 |
| MalI | GATC | 3 cut(s) | 10, 192, 218 |
| MboI | GATC | 3 cut(s) | 8, 190, 216 |
| MboII | GAAGA | 3 cut(s) | 88, 130, 271 |
| MflI | RGATCY | 1 cut(s) | 8 |
| MlsI | TGGCCA | 1 cut(s) | 212 |
| MluCI | AATT | 3 cut(s) | 19, 51, 83 |
| MluNI | TGGCCA | 1 cut(s) | 212 |
| MnlI | CCTC | 4 cut(s) | 21, 57, 94, 216 |
| Mox20I | TGGCCA | 1 cut(s) | 212 |
| MscI | TGGCCA | 1 cut(s) | 212 |
| MseI | TTAA | 2 cut(s) | 114, 180 |
| Msp20I | TGGCCA | 1 cut(s) | 212 |
| MspR9I | CCNGG | 1 cut(s) | 233 |
| MvaI | CCWGG | 1 cut(s) | 233 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 101 |
| NdeII | GATC | 3 cut(s) | 8, 190, 216 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 69 |
| PkrI | GCNGC | 2 cut(s) | 94, 106 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| Psp6I | CCWGG | 1 cut(s) | 231 |
| PspGI | CCWGG | 1 cut(s) | 231 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 69 |
| PspPI | GGNCC | 2 cut(s) | 67, 171 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 8 |
| SaqAI | TTAA | 2 cut(s) | 114, 180 |
| SatI | GCNGC | 2 cut(s) | 93, 105 |
| Sau3AI | GATC | 3 cut(s) | 8, 190, 216 |
| Sau96I | GGNCC | 2 cut(s) | 67, 171 |
| ScrFI | CCNGG | 1 cut(s) | 233 |
| SetI | ASST | 3 cut(s) | 137, 153, 204 |
| SinI | GGWCC | 1 cut(s) | 67 |
| Sse9I | AATT | 3 cut(s) | 19, 51, 83 |
| SsiI | CCGC | 1 cut(s) | 93 |
| StyD4I | CCNGG | 1 cut(s) | 231 |
| TasI | AATT | 3 cut(s) | 19, 51, 83 |
| TauI | GCSGC | 1 cut(s) | 95 |
| Tru1I | TTAA | 2 cut(s) | 114, 180 |
| Tru9I | TTAA | 2 cut(s) | 114, 180 |
| TscAI | CASTG | 1 cut(s) | 46 |
| TseI | GCWGC | 1 cut(s) | 104 |
| TspDTI | ATGAA | 1 cut(s) | 32 |
| TspRI | CASTG | 1 cut(s) | 46 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 1 cut(s) | 19 |