Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0021282

Physical Location & Seq

Genomic Coordinates Forward (+)

11210044 .. 11210586

Gene Structure 543 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG057600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGAGGTCCCAAATGAATTTCAAGAGACTTTCCCTCACTGACATCAAGATTGACATCAAGAGGGTCCCGAAGAAGAAGGAACTGCTTGCTGCAATGGAGGCTGCTGATGTGAAGAAGAAGTGGGAAAGCAGCTCTTGGGGTAGGAAACTGATTGTTCAGAAGAGAAGGGCATCTCTTAATGACTTTGATCGATTCAAGCTCATGTTGGCTAAGATTAAGAGGGCTGGGCTGGTGAAGAACGAGCTTTCTAAACTGAAGAAGGAGGTTGCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L14e

Protein Analysis

92

Amino Acids

10.7

Weight (kDa)

10.64

Isoelectric Point (pI)

28.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L14e	PF01929	3 - 75	9.5e-27	Ribosomal protein L14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021282)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g18920
rosa_multiflora	Rmu_co8287205.1_g000001 Rmu_co8313979.1_g000001
rosa_samantha	Rh4CG054000 Rh4CG057600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	19
AcuI	CTGAAG	1 cut(s)	278
AgsI	TTSAA	2 cut(s)	25, 199
AluBI	AGCT	4 cut(s)	135, 202, 247, 275
AluI	AGCT	4 cut(s)	135, 202, 247, 275
Alw26I	GTCTC	1 cut(s)	22
ApeKI	GCWGC	4 cut(s)	92, 104, 132, 272
ApoI	RAATTY	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	9, 67
AsuHPI	GGTGA	2 cut(s)	16, 247
AvaII	GGWCC	2 cut(s)	9, 67
BbvI	GCAGC	3 cut(s)	79, 91, 144
BcoDI	GTCTC	1 cut(s)	22
BisI	GCNGC	4 cut(s)	93, 105, 133, 273
BlsI	GCNGC	4 cut(s)	94, 106, 134, 274
Bme18I	GGWCC	2 cut(s)	9, 67
BmgT120I	GGNCC	2 cut(s)	9, 67
BmiI	GGNNCC	3 cut(s)	11, 68, 69
BmsI	GCATC	1 cut(s)	182
Bsa29I	ATCGAT	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	193
BseJI	GATNNNNATC	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	102
BseXI	GCAGC	3 cut(s)	79, 91, 144
BseYI	CCCAGC	1 cut(s)	227
BshVI	ATCGAT	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	190
BspDI	ATCGAT	1 cut(s)	193
BspLI	GGNNCC	3 cut(s)	11, 68, 69
BsrDI	GCAATG	1 cut(s)	102
BssMI	GATC	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	213
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	79, 91, 144
Bsu15I	ATCGAT	1 cut(s)	193
BsuTUI	ATCGAT	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	9, 67
ClaI	ATCGAT	1 cut(s)	193
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	104, 135, 202, 212, 227, 232, 247, 275
CviKI_1	RGCY	8 cut(s)	104, 135, 202, 212, 227, 232, 247, 275
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco47I	GGWCC	2 cut(s)	9, 67
Eco57I	CTGAAG	1 cut(s)	278
EcoO109I	RGGNCCY	2 cut(s)	9, 67
FaeI	CATG	1 cut(s)	208
FaiI	YATR	1 cut(s)	206
FalI	AAGNNNNNCTT	2 cut(s)	121, 153
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	93, 105, 133, 273
Fsp4HI	GCNGC	4 cut(s)	93, 105, 133, 273
GluI	GCNGC	4 cut(s)	93, 105, 133, 273
GsaI	CCCAGC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	1 cut(s)	195
HphI	GGTGA	2 cut(s)	16, 247
Hpy188I	TCNGA	1 cut(s)	162
Hpy188III	TCNNGA	4 cut(s)	25, 49, 61, 70
HpyAV	CCTTC	3 cut(s)	73, 162, 256
HpyCH4V	TGCA	2 cut(s)	95, 272
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	1 cut(s)	208
KflI	GGGWCCC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	190
LpnPI	CCDG	2 cut(s)	213, 218
Lsp1109I	GCAGC	3 cut(s)	79, 91, 144
LweI	GCATC	1 cut(s)	182
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	7 cut(s)	85, 88, 127, 130, 175, 250, 271
MluCI	AATT	1 cut(s)	19
MnlI	CCTC	5 cut(s)	47, 57, 94, 216, 259
MseI	TTAA	3 cut(s)	180, 219, 277
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	3 cut(s)	11, 68, 69
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	94, 106, 134, 274
PpuMI	RGGWCCY	2 cut(s)	9, 67
Psp5II	RGGWCCY	2 cut(s)	9, 67
PspFI	CCCAGC	1 cut(s)	227
PspN4I	GGNNCC	3 cut(s)	11, 68, 69
PspPI	GGNCC	2 cut(s)	9, 67
PspPPI	RGGWCCY	2 cut(s)	9, 67
SaqAI	TTAA	3 cut(s)	180, 219, 277
SatI	GCNGC	4 cut(s)	93, 105, 133, 273
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	2 cut(s)	9, 67
SetI	ASST	6 cut(s)	11, 137, 204, 249, 270, 277
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	2 cut(s)	9, 67
Sse9I	AATT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	3 cut(s)	180, 219, 277
Tru9I	TTAA	3 cut(s)	180, 219, 277
TscAI	CASTG	1 cut(s)	46
TseI	GCWGC	4 cut(s)	92, 104, 132, 272
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	46
VpaK11BI	GGWCC	2 cut(s)	9, 67
XapI	RAATTY	1 cut(s)	19

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.