Rmu_co8341309.1_g000001

Methyltransferase FkbM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8341309.1
OG0015585
Physical Location & Seq
Forward (+)
1 .. 1007
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8341309.1_g000001.1.cds

Sequence Viewer

Length: 715 bp
agactttccctctattttttcctttcacaatcttcttccctctcggaaacaccgtacttggaattctgtggttctcttcttgatggatcctccgacattgaaacccaaccagctaagaagcatcctcgtccgcctccttaccttcggcgtcctcgtccttgccgtccgtttcgcctacgtcatcaccctcgccgacgagtcttgcggctacaacgacttctgcttcttccccgaccacctcagactccgaggcagcgcatcgttggaccaaaacgccgccgtttcggggtccaaagatccacgtggcgtcgacctctggtcgaccaagaagtggcgcagtacagtggattactactccgcgattttccaagaactcatcgccgaggggttcctcgcccccaattccaaggccctctgcgtcgggacccgcgccggagaggacgtgctggcacttaaagaaaacggcgtcgttaattcaattggaatctcaggcaccgcttctccgccgttgatcctccccggggccccccaccgccagccgttcgatgaagccagtttcgacttcgaattctccgccaacggctccctggaccggtcgggtcgacccgcggatttcgcgaacgagactcatccgcacccgcgacgtcgacggcgtcgatacgacgtcggttcgcgaggtcgtgctgagaaaagaggcgcaatttctcaaccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_11 Methyltransf_21

Protein Analysis

237

Amino Acids

26.32

Weight (kDa)

9.43

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015585)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g39840
malus_domestica MD11G1059300.v1.1
prunus_persica Prupe.6G047200_v2.0.a1
pyrus_communis pycom11g04920
rosa_chinensis RchiOBHm_Chr5g0071801
rosa_laevigata RLG00000036249
rosa_multiflora Rmu_co8341309.1_g000001 Rmu_sc0001113.1_g000014
rosa_roxburghii Rroxscaffold_1G00009360
rosa_rugosa Rorug05G0414700 Rorug05G0414700
rosa_samantha Rh5AG470800 Rh5BG490600 Rh5CG514600 Rh5DG501900
rosa_wichuraiana Rw5G043760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 647, 667
AccB1I GGYRCC 1 cut(s) 492
AccB7I CCANNNNNTGG 1 cut(s) 331
AccI GTMKAC 4 cut(s) 310, 321, 602, 647
AccII CGCG 6 cut(s) 360, 430, 609, 618, 641, 674
AclWI GGATC 4 cut(s) 81, 94, 291, 506
AcsI RAATTY 2 cut(s) 62, 567
AcvI CACGTG 1 cut(s) 303
AcyI GRCGYC 6 cut(s) 148, 307, 466, 644, 653, 664
AfaI GTAC 2 cut(s) 56, 341
AfiI CCNNNNNNNGG 4 cut(s) 286, 331, 521, 592
AgeI ACCGGT 1 cut(s) 592
AgsI TTSAA 2 cut(s) 101, 478
AhdI GACNNNNNGTC 1 cut(s) 317
AjiI CACGTC 1 cut(s) 443
AjnI CCWGG 1 cut(s) 586
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 618
AlwI GGATC 4 cut(s) 81, 94, 291, 506
Ama87I CYCGRG 1 cut(s) 519
AoxI GGCC 2 cut(s) 409, 523
ApaI GGGCCC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 62, 567
AsiGI ACCGGT 1 cut(s) 592
AspLEI GCGC 4 cut(s) 258, 337, 432, 699
AspS9I GGNCC 7 cut(s) 266, 289, 410, 424, 523, 524, 590
AsuC2I CCSGG 2 cut(s) 520, 521
AsuHPI GGTGA 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 565
AvaI CYCGRG 1 cut(s) 519
AvaII GGWCC 4 cut(s) 266, 289, 424, 590
BaeGI GKGCMC 1 cut(s) 527
BamHI GGATCC 1 cut(s) 86
BanI GGYRCC 1 cut(s) 492
BanII GRGCYC 1 cut(s) 527
BbrPI CACGTG 1 cut(s) 303
BbvI GCAGC 1 cut(s) 265
BccI CCATC 1 cut(s) 77
BceAI ACGGC 7 cut(s) 147, 264, 479, 491, 524, 596, 666
BciT130I CCWGG 1 cut(s) 588
BcnI CCSGG 2 cut(s) 520, 521
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 1 cut(s) 713
BisI GCNGC 3 cut(s) 206, 254, 277
BlsI GCNGC 3 cut(s) 207, 255, 278
Bme1390I CCNGG 3 cut(s) 520, 521, 588
Bme18I GGWCC 4 cut(s) 266, 289, 424, 590
BmeRI GACNNNNNGTC 1 cut(s) 317
BmeT110I CYCGRG 1 cut(s) 519
BmgBI CACGTC 1 cut(s) 443
BmgT120I GGNCC 7 cut(s) 266, 289, 410, 424, 523, 524, 590
BmrFI CCNGG 3 cut(s) 520, 521, 588
BmsI GCATC 2 cut(s) 130, 267
Bpu14I TTCGAA 1 cut(s) 565
BpuMI CCSGG 2 cut(s) 520, 521
BsaAI YACGTR 1 cut(s) 303
BsaHI GRCGYC 6 cut(s) 148, 307, 466, 644, 653, 664
BsaJI CCNNGG 8 cut(s) 248, 382, 406, 518, 519, 520, 586, 607
BsaWI WCCGGW 1 cut(s) 592
BsaXI ACNNNNNCTCC 4 cut(s) 427, 457, 485, 515
Bsc4I CCNNNNNNNGG 4 cut(s) 286, 331, 521, 592
Bse118I RCCGGY 1 cut(s) 592
Bse1I ACTGG 1 cut(s) 553
BseBI CCWGG 1 cut(s) 588
BseDI CCNNGG 8 cut(s) 248, 382, 406, 518, 519, 520, 586, 607
BseGI GGATG 2 cut(s) 121, 629
BseLI CCNNNNNNNGG 4 cut(s) 286, 331, 521, 592
BseMII CTCAG 3 cut(s) 254, 502, 676
BseNI ACTGG 1 cut(s) 553
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 1 cut(s) 265
Bsh1236I CGCG 6 cut(s) 360, 430, 609, 618, 641, 674
Bsh1285I CGRYCG 1 cut(s) 597
BshFI GGCC 2 cut(s) 411, 525
BshNI GGYRCC 1 cut(s) 492
BshTI ACCGGT 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 597
BsiHKCI CYCGRG 1 cut(s) 519
BsiSI CCGG 3 cut(s) 433, 520, 593
BslFI GGGAC 1 cut(s) 437
BslI CCNNNNNNNGG 4 cut(s) 286, 331, 521, 592
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 437
BsnI GGCC 2 cut(s) 411, 525
BsoBI CYCGRG 1 cut(s) 519
Bsp119I TTCGAA 1 cut(s) 565
Bsp120I GGGCCC 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 527
Bsp143I GATC 3 cut(s) 86, 296, 511
Bsp68I TCGCGA 2 cut(s) 618, 674
BspANI GGCC 2 cut(s) 411, 525
BspCNI CTCAG 3 cut(s) 253, 501, 677
BspFNI CGCG 6 cut(s) 360, 430, 609, 618, 641, 674
BspPI GGATC 4 cut(s) 81, 94, 291, 506
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 492
BsrFI RCCGGY 1 cut(s) 592
BsrI ACTGG 1 cut(s) 553
BssAI RCCGGY 1 cut(s) 592
BssECI CCNNGG 8 cut(s) 248, 382, 406, 518, 519, 520, 586, 607
BssMI GATC 3 cut(s) 86, 296, 511
BssNI GRCGYC 6 cut(s) 148, 307, 466, 644, 653, 664
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 588
Bst4CI ACNGT 2 cut(s) 54, 344
Bst6I CTCTTC 1 cut(s) 81
BstACI GRCGYC 6 cut(s) 148, 307, 466, 644, 653, 664
BstBAI YACGTR 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 2 cut(s) 448, 537
BstDEI CTNAG 4 cut(s) 114, 240, 488, 685
BstDSI CCRYGG 1 cut(s) 607
BstF5I GGATG 2 cut(s) 121, 629
BstFNI CGCG 6 cut(s) 360, 430, 609, 618, 641, 674
BstHHI GCGC 4 cut(s) 258, 337, 432, 699
BstKTI GATC 3 cut(s) 89, 299, 514
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 3 cut(s) 86, 296, 511
BstMCI CGRYCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 1 cut(s) 615
BstNI CCWGG 1 cut(s) 588
BstSCI CCNGG 3 cut(s) 518, 519, 586
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 6 cut(s) 360, 430, 609, 618, 641, 674
BstV1I GCAGC 1 cut(s) 265
BstX2I RGATCY 2 cut(s) 86, 296
BstYI RGATCY 2 cut(s) 86, 296
BsuRI GGCC 2 cut(s) 411, 525
BtgI CCRYGG 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 362
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 2 cut(s) 121, 629
BtsIMutI CAGTG 1 cut(s) 349
BtuMI TCGCGA 2 cut(s) 618, 674
Cac8I GCNNGC 2 cut(s) 448, 537
CfoI GCGC 4 cut(s) 258, 337, 432, 699
Cfr10I RCCGGY 1 cut(s) 592
Cfr13I GGNCC 7 cut(s) 266, 289, 410, 424, 523, 524, 590
Cfr42I CCGCGG 1 cut(s) 610
Cfr9I CCCGGG 1 cut(s) 519
CseI GACGC 5 cut(s) 137, 296, 407, 455, 642
Csp6I GTAC 2 cut(s) 55, 340
CspAI ACCGGT 1 cut(s) 592
CviJI RGCY 7 cut(s) 113, 208, 411, 525, 539, 552, 583
CviKI_1 RGCY 7 cut(s) 113, 208, 411, 525, 539, 552, 583
CviQI GTAC 2 cut(s) 55, 340
DdeI CTNAG 4 cut(s) 114, 240, 488, 685
DpnI GATC 3 cut(s) 88, 298, 513
DpnII GATC 3 cut(s) 86, 296, 511
DriI GACNNNNNGTC 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 81
Eam1105I GACNNNNNGTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 81
EciI GGCGGA 3 cut(s) 120, 493, 563
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 527
Eco47I GGWCC 4 cut(s) 266, 289, 424, 590
Eco72I CACGTG 1 cut(s) 303
Eco88I CYCGRG 1 cut(s) 519
EcoO109I RGGNCCY 4 cut(s) 410, 424, 523, 524
EcoRI GAATTC 2 cut(s) 62, 567
EcoRII CCWGG 1 cut(s) 586
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 406
FaqI GGGAC 1 cut(s) 437
FauI CCCGC 3 cut(s) 435, 614, 646
FblI GTMKAC 4 cut(s) 310, 321, 602, 647
Fnu4HI GCNGC 3 cut(s) 206, 254, 277
FokI GGATG 2 cut(s) 108, 616
FriOI GRGCYC 1 cut(s) 527
Fsp4HI GCNGC 3 cut(s) 206, 254, 277
FspBI CTAG 1 cut(s) 713
GlaI GCGC 4 cut(s) 257, 336, 431, 698
GluI GCNGC 3 cut(s) 206, 254, 277
HaeIII GGCC 2 cut(s) 411, 525
HapII CCGG 3 cut(s) 433, 520, 593
HgaI GACGC 5 cut(s) 137, 296, 407, 455, 642
HhaI GCGC 4 cut(s) 258, 337, 432, 699
Hin1I GRCGYC 6 cut(s) 148, 307, 466, 644, 653, 664
Hin6I GCGC 4 cut(s) 256, 335, 430, 697
HinP1I GCGC 4 cut(s) 256, 335, 430, 697
HincII GTYRAC 4 cut(s) 311, 322, 603, 648
HindII GTYRAC 4 cut(s) 311, 322, 603, 648
HinfI GANTC 4 cut(s) 198, 244, 484, 626
HpaII CCGG 3 cut(s) 433, 520, 593
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 4 cut(s) 311, 322, 603, 648
Hpy188I TCNGA 4 cut(s) 46, 94, 243, 249
Hpy188III TCNNGA 4 cut(s) 80, 422, 617, 673
Hpy8I GTNNAC 4 cut(s) 311, 322, 603, 648
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 2 cut(s) 54, 344
HpyCH4IV ACGT 5 cut(s) 178, 302, 442, 644, 664
HpyF10VI GCNNNNNNNGC 1 cut(s) 615
HpyF3I CTNAG 4 cut(s) 114, 240, 488, 685
HpySE526I ACGT 5 cut(s) 178, 302, 442, 644, 664
Hsp92I GRCGYC 6 cut(s) 148, 307, 466, 644, 653, 664
HspAI GCGC 4 cut(s) 256, 335, 430, 697
KflI GGGWCCC 1 cut(s) 424
KspI CCGCGG 1 cut(s) 610
Kzo9I GATC 3 cut(s) 86, 296, 511
LmnI GCTCC 1 cut(s) 588
Lsp1109I GCAGC 1 cut(s) 265
LweI GCATC 2 cut(s) 130, 267
MaeI CTAG 1 cut(s) 713
MaeII ACGT 5 cut(s) 178, 302, 442, 644, 664
MalI GATC 3 cut(s) 88, 298, 513
MboI GATC 3 cut(s) 86, 296, 511
MboII GAAGA 4 cut(s) 24, 27, 68, 218
MfeI CAATTG 1 cut(s) 478
MflI RGATCY 2 cut(s) 86, 296
MhlI GDGCHC 1 cut(s) 527
MluCI AATT 6 cut(s) 62, 401, 473, 478, 567, 700
MlyI GAGTC 3 cut(s) 207, 238, 620
MmeI TCCRAC 2 cut(s) 117, 244
MseI TTAA 2 cut(s) 454, 472
MspA1I CMGCKG 1 cut(s) 609
MspI CCGG 3 cut(s) 433, 520, 593
MspR9I CCNGG 3 cut(s) 520, 521, 588
MunI CAATTG 1 cut(s) 478
MvaI CCWGG 1 cut(s) 588
MvnI CGCG 6 cut(s) 360, 430, 609, 618, 641, 674
MwoI GCNNNNNNNGC 1 cut(s) 615
NciI CCSGG 2 cut(s) 520, 521
NdeII GATC 3 cut(s) 86, 296, 511
NmeAIII GCCGAG 1 cut(s) 407
NruI TCGCGA 2 cut(s) 618, 674
NspV TTCGAA 1 cut(s) 565
PcsI WCGNNNNNNNCGW 5 cut(s) 50, 151, 160, 650, 653
PfeI GAWTC 1 cut(s) 484
PflFI GACNNNGTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 592
PkrI GCNGC 3 cut(s) 207, 255, 278
PleI GAGTC 3 cut(s) 206, 238, 620
PmaCI CACGTG 1 cut(s) 303
PmlI CACGTG 1 cut(s) 303
PpsI GAGTC 3 cut(s) 206, 238, 620
Ppu21I YACGTR 1 cut(s) 303
PpuMI RGGWCCY 1 cut(s) 424
Psp5II RGGWCCY 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 586
PspCI CACGTG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 586
PspOMI GGGCCC 1 cut(s) 523
PspPI GGNCC 7 cut(s) 266, 289, 410, 424, 523, 524, 590
PspPPI RGGWCCY 1 cut(s) 424
PsuI RGATCY 2 cut(s) 86, 296
PsyI GACNNNGTC 1 cut(s) 652
RruI TCGCGA 2 cut(s) 618, 674
RsaI GTAC 2 cut(s) 56, 341
RsaNI GTAC 2 cut(s) 55, 340
SacII CCGCGG 1 cut(s) 610
SalI GTCGAC 4 cut(s) 309, 320, 601, 646
SaqAI TTAA 2 cut(s) 454, 472
SatI GCNGC 3 cut(s) 206, 254, 277
Sau3AI GATC 3 cut(s) 86, 296, 511
Sau96I GGNCC 7 cut(s) 266, 289, 410, 424, 523, 524, 590
SchI GAGTC 3 cut(s) 207, 238, 620
ScrFI CCNGG 3 cut(s) 520, 521, 588
SduI GDGCHC 1 cut(s) 527
SfaNI GCATC 2 cut(s) 130, 267
Sfr303I CCGCGG 1 cut(s) 610
SfuI TTCGAA 1 cut(s) 565
SgrBI CCGCGG 1 cut(s) 610
SgrDI CGTCGACG 1 cut(s) 646
SinI GGWCC 4 cut(s) 266, 289, 424, 590
SmaI CCCGGG 1 cut(s) 521
Sse9I AATT 6 cut(s) 62, 401, 473, 478, 567, 700
SspMI CTAG 1 cut(s) 713
StyD4I CCNGG 3 cut(s) 518, 519, 586
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 2 cut(s) 54, 344
TaiI ACGT 5 cut(s) 181, 305, 445, 647, 667
TaqI TCGA 8 cut(s) 310, 321, 544, 559, 565, 602, 647, 656
TasI AATT 6 cut(s) 62, 401, 473, 478, 567, 700
TatI WGTACW 1 cut(s) 339
TauI GCSGC 2 cut(s) 208, 279
TfiI GAWTC 1 cut(s) 484
Tru1I TTAA 2 cut(s) 454, 472
Tru9I TTAA 2 cut(s) 454, 472
TscAI CASTG 1 cut(s) 349
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 1 cut(s) 562
TspGWI ACGGA 1 cut(s) 156
TspMI CCCGGG 1 cut(s) 519
TspRI CASTG 1 cut(s) 349
Tth111I GACNNNGTC 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 4 cut(s) 266, 289, 424, 590
XapI RAATTY 2 cut(s) 62, 567
XcmI CCANNNNNNNNNTGG 1 cut(s) 584
XmaI CCCGGG 1 cut(s) 519
XmiI GTMKAC 4 cut(s) 310, 321, 602, 647
XspI CTAG 1 cut(s) 713
ZraI GACGTC 2 cut(s) 645, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.