Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354755.1

Orthogroup ID

OG0015891

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 812

Gene Structure 811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354755.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 811 bp

atgcctgagatcgaggtcgtctccgacgccgcctcagaagcctcctcggaggagggcggcggcgccttgttcgggaaatatgagctggggaagctcctcggccgcggcgcattcgccaaggtctaccacgggcgtgacgtcggcaacgggcggagcgtggcgatcaaggcggtgagcaagcagaaggtgctcaagggaggcttcacggcgaacgtgaagcgcgagatctcgatcatgcggcggctgcagcatccgcacatcgtgaagctctatgaggtgttggcgacgaaaaccaagatctatttcatcatggagttcgcgaaaggcggcgagttgttcgggaagatatccaaggggaggttcagcgaggatctcagccgtcggtacttccagcagctgatctccgccgtcggatactgccactcccgcggcgtcttccaccgcgatttgaagccggagaatttgctgttggatgagaattggaatttgaaggtctcggatttcggactctccgccgtgacggagcagatccgacccgatgggcttctccacactctctgcggcacccccgcctacgtggcgccggagattctcgcaaagaaaggctacgacggcgccaaggtggacatatggtcgtgcggcatcatactctttgttctcaacgccggttacttgccgttcaacgaccccaatctgatggtaatgtaccggaaaatttacaaaggagagtttcgctttccgaggtggacgtcgcctgacctgaaacgcttgattacgcgcctgctggacacgaacgtcgagacgaggatca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030054 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04113 ko04138 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

270

Amino Acids

30.32

Weight (kDa)

9.48

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01820
fragaria_vesca	FvH4_6g10160
malus_domestica	MD04G1172200.v1.1 MD12G1185400.v1.1
prunus_persica	Prupe.6G290700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0460881
rosa_laevigata	RLG00000024971
rosa_multiflora	Rmu_co8354755.1_g000001 Rmu_sc0008258.1_g000006
rosa_roxburghii	Rroxscaffold_6G00419060
rosa_rugosa	Rorug03G0047000
rosa_samantha	Rh3AG104200 Rh3BG107900 Rh3DG109700
rosa_wichuraiana	Rw3G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	794
AatII	GACGTC	2 cut(s)	141, 752
AccB1I	GGYRCC	4 cut(s)	62, 563, 580, 614
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	6 cut(s)	105, 222, 320, 429, 444, 778
AclWI	GGATC	2 cut(s)	378, 523
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	3 cut(s)	460, 484, 714
AcyI	GRCGYC	7 cut(s)	27, 63, 138, 432, 581, 615, 749
AdeI	CACNNNGTG	1 cut(s)	262
AfaI	GTAC	2 cut(s)	386, 707
AfiI	CCNNNNNNNGG	2 cut(s)	72, 357
AgsI	TTSAA	3 cut(s)	451, 490, 682
AhdI	GACNNNNNGTC	1 cut(s)	631
AjuI	GAANNNNNNNTTGG	6 cut(s)	287, 319, 344, 376, 452, 484
AleI	CACNNNNGTG	1 cut(s)	132
AluBI	AGCT	4 cut(s)	85, 94, 268, 397
AluI	AGCT	4 cut(s)	85, 94, 268, 397
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	3 cut(s)	25, 499, 794
AlwI	GGATC	2 cut(s)	378, 523
AlwNI	CAGNNNCTG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	3 cut(s)	244, 247, 394
ApoI	RAATTY	3 cut(s)	460, 484, 714
AspLEI	GCGC	6 cut(s)	65, 110, 222, 583, 617, 780
AsuHPI	GGTGA	1 cut(s)	184
BanI	GGYRCC	4 cut(s)	62, 563, 580, 614
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	3 cut(s)	231, 259, 406
BccI	CCATC	2 cut(s)	533, 691
BceAI	ACGGC	6 cut(s)	222, 363, 392, 500, 628, 661
BciVI	GTATCC	1 cut(s)	407
BcoDI	GTCTC	3 cut(s)	25, 499, 794
BfmI	CTRYAG	1 cut(s)	245
BfoI	RGCGCY	3 cut(s)	66, 584, 618
BfuI	GTATCC	1 cut(s)	407
BglI	GCCNNNNNGGC	1 cut(s)	578
BglII	AGATCT	2 cut(s)	225, 297
BmeRI	GACNNNNNGTC	1 cut(s)	631
BmiI	GGNNCC	4 cut(s)	64, 565, 582, 616
BmsI	GCATC	2 cut(s)	259, 651
BpiI	GAAGAC	1 cut(s)	427
BplI	GAGNNNNNCTC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	176
BsaAI	YACGTR	1 cut(s)	577
BsaBI	GATNNNNATC	1 cut(s)	230
BsaHI	GRCGYC	7 cut(s)	27, 63, 138, 432, 581, 615, 749
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	9 cut(s)	45, 97, 103, 117, 127, 351, 427, 618, 740
BsaWI	WCCGGW	1 cut(s)	708
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 357
Bse118I	RCCGGY	1 cut(s)	665
Bse8I	GATNNNNATC	1 cut(s)	230
BseDI	CCNNGG	9 cut(s)	45, 97, 103, 117, 127, 351, 427, 618, 740
BseGI	GGATG	2 cut(s)	250, 478
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	72, 357
BseMII	CTCAG	2 cut(s)	48, 388
BseRI	GAGGAG	3 cut(s)	34, 65, 86
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	3 cut(s)	231, 259, 406
BseYI	CCCAGC	1 cut(s)	85
Bsh1236I	CGCG	6 cut(s)	105, 222, 320, 429, 444, 778
Bsh1285I	CGRYCG	1 cut(s)	103
BshFI	GGCC	1 cut(s)	102
BshNI	GGYRCC	4 cut(s)	62, 563, 580, 614
BsiEI	CGRYCG	1 cut(s)	103
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	4 cut(s)	455, 584, 666, 709
BslI	CCNNNNNNNGG	2 cut(s)	72, 357
BsmAI	GTCTC	3 cut(s)	25, 499, 794
BsmBI	CGTCTC	2 cut(s)	25, 794
BsmI	GAATGC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	499
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
Bsp68I	TCGCGA	1 cut(s)	320
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	2 cut(s)	47, 387
BspFNI	CGCG	6 cut(s)	105, 222, 320, 429, 444, 778
BspLI	GGNNCC	4 cut(s)	64, 565, 582, 616
BspMAI	CTGCAG	1 cut(s)	249
BspPI	GGATC	2 cut(s)	378, 523
BspT107I	GGYRCC	4 cut(s)	62, 563, 580, 614
BspTNI	GGTCTC	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	665
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	9 cut(s)	45, 97, 103, 117, 127, 351, 427, 618, 740
BssMI	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
BssNI	GRCGYC	7 cut(s)	27, 63, 138, 432, 581, 615, 749
BssT1I	CCWWGG	3 cut(s)	117, 351, 618
BstACI	GRCGYC	7 cut(s)	27, 63, 138, 432, 581, 615, 749
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstBAI	YACGTR	1 cut(s)	577
BstC8I	GCNNGC	2 cut(s)	179, 782
BstDEI	CTNAG	3 cut(s)	6, 34, 374
BstDSI	CCRYGG	3 cut(s)	103, 127, 427
BstF5I	GGATG	2 cut(s)	250, 478
BstFNI	CGCG	6 cut(s)	105, 222, 320, 429, 444, 778
BstH2I	RGCGCY	3 cut(s)	66, 584, 618
BstHHI	GCGC	6 cut(s)	65, 110, 222, 583, 617, 780
BstKTI	GATC	9 cut(s)	12, 165, 228, 234, 300, 373, 402, 531, 810
BstMAI	GTCTC	3 cut(s)	25, 499, 794
BstMBI	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
BstMCI	CGRYCG	1 cut(s)	103
BstSFI	CTRYAG	1 cut(s)	245
BstUI	CGCG	6 cut(s)	105, 222, 320, 429, 444, 778
BstV1I	GCAGC	3 cut(s)	231, 259, 406
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	4 cut(s)	225, 297, 370, 528
BstXI	CCANNNNNNTGG	1 cut(s)	697
BstYI	RGATCY	4 cut(s)	225, 297, 370, 528
BstZI	CGGCCG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	3 cut(s)	103, 127, 427
BtsCI	GGATG	2 cut(s)	250, 478
BtuMI	TCGCGA	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	179, 782
CaiI	CAGNNNCTG	1 cut(s)	397
CfoI	GCGC	6 cut(s)	65, 110, 222, 583, 617, 780
Cfr10I	RCCGGY	1 cut(s)	665
Cfr42I	CCGCGG	2 cut(s)	106, 430
CseI	GACGC	2 cut(s)	35, 421
Csp6I	GTAC	2 cut(s)	385, 706
CviAII	CATG	2 cut(s)	235, 310
CviQI	GTAC	2 cut(s)	385, 706
DdeI	CTNAG	3 cut(s)	6, 34, 374
DinI	GGCGCC	3 cut(s)	64, 582, 616
DpnI	GATC	9 cut(s)	11, 164, 227, 233, 299, 372, 401, 530, 809
DpnII	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
DraIII	CACNNNGTG	1 cut(s)	262
DrdI	GACNNNNNNGTC	1 cut(s)	794
DriI	GACNNNNNGTC	1 cut(s)	631
DseDI	GACNNNNNNGTC	1 cut(s)	794
EaeI	YGGCCR	1 cut(s)	100
EagI	CGGCCG	1 cut(s)	100
Eam1105I	GACNNNNNGTC	1 cut(s)	631
EciI	GGCGGA	3 cut(s)	166, 394, 502
EclXI	CGGCCG	1 cut(s)	100
Eco130I	CCWWGG	3 cut(s)	117, 351, 618
Eco31I	GGTCTC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	348
Eco52I	CGGCCG	1 cut(s)	100
EcoRV	GATATC	1 cut(s)	348
EcoT14I	CCWWGG	3 cut(s)	117, 351, 618
EgeI	GGCGCC	3 cut(s)	64, 582, 616
EheI	GGCGCC	3 cut(s)	64, 582, 616
ErhI	CCWWGG	3 cut(s)	117, 351, 618
Esp3I	CGTCTC	2 cut(s)	25, 794
FaeI	CATG	2 cut(s)	238, 313
FaiI	YATR	7 cut(s)	81, 236, 273, 311, 629, 631, 647
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	2 cut(s)	234, 309
FauI	CCCGC	2 cut(s)	434, 577
FauNDI	CATATG	1 cut(s)	629
FblI	GTMKAC	1 cut(s)	123
FokI	GGATG	2 cut(s)	237, 485
GlaI	GCGC	6 cut(s)	64, 109, 221, 582, 616, 779
GsaI	CCCAGC	1 cut(s)	89
HaeII	RGCGCY	3 cut(s)	66, 584, 618
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	4 cut(s)	455, 584, 666, 709
HgaI	GACGC	2 cut(s)	35, 421
HhaI	GCGC	6 cut(s)	65, 110, 222, 583, 617, 780
Hin1I	GRCGYC	7 cut(s)	27, 63, 138, 432, 581, 615, 749
Hin1II	CATG	2 cut(s)	238, 313
Hin6I	GCGC	6 cut(s)	63, 108, 220, 581, 615, 778
HinP1I	GCGC	6 cut(s)	63, 108, 220, 581, 615, 778
HinfI	GANTC	2 cut(s)	507, 589
HpaII	CCGG	4 cut(s)	455, 584, 666, 709
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	3 cut(s)	124, 625, 747
Hpy188I	TCNGA	9 cut(s)	25, 37, 49, 413, 499, 506, 533, 696, 741
Hpy188III	TCNNGA	6 cut(s)	73, 229, 262, 319, 340, 799
Hpy8I	GTNNAC	3 cut(s)	124, 625, 747
Hpy99I	CGWCG	8 cut(s)	29, 143, 289, 384, 413, 614, 754, 800
HpyAV	CCTTC	2 cut(s)	178, 484
HpyCH4IV	ACGT	5 cut(s)	138, 213, 576, 749, 795
HpyCH4V	TGCA	1 cut(s)	247
HpyF3I	CTNAG	3 cut(s)	6, 34, 374
HpySE526I	ACGT	5 cut(s)	138, 213, 576, 749, 795
Hsp92I	GRCGYC	7 cut(s)	27, 63, 138, 432, 581, 615, 749
Hsp92II	CATG	2 cut(s)	238, 313
HspAI	GCGC	6 cut(s)	63, 108, 220, 581, 615, 778
KasI	GGCGCC	3 cut(s)	62, 580, 614
KspI	CCGCGG	2 cut(s)	106, 430
Kzo9I	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
LmnI	GCTCC	3 cut(s)	99, 153, 523
Lsp1109I	GCAGC	3 cut(s)	231, 259, 406
LweI	GCATC	2 cut(s)	259, 651
MaeII	ACGT	5 cut(s)	138, 213, 576, 749, 795
MaeIII	GTNAC	3 cut(s)	134, 517, 668
MalI	GATC	9 cut(s)	11, 164, 227, 233, 299, 372, 401, 530, 809
MboI	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
MboII	GAAGA	2 cut(s)	355, 427
MflI	RGATCY	4 cut(s)	225, 297, 370, 528
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	460, 478, 484, 714
Mly113I	GGCGCC	3 cut(s)	63, 581, 615
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	4 cut(s)	48, 391, 450, 556
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	3 cut(s)	105, 397, 429
MspI	CCGG	4 cut(s)	455, 584, 666, 709
Mva1269I	GAATGC	1 cut(s)	110
MvnI	CGCG	6 cut(s)	105, 222, 320, 429, 444, 778
NarI	GGCGCC	3 cut(s)	63, 581, 615
NdeI	CATATG	1 cut(s)	629
NdeII	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
NlaIII	CATG	2 cut(s)	238, 313
NlaIV	GGNNCC	4 cut(s)	64, 565, 582, 616
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	134, 517
NruI	TCGCGA	1 cut(s)	320
OliI	CACNNNNGTG	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	3 cut(s)	135, 153, 219
PctI	GAATGC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	589
PleI	GAGTC	1 cut(s)	501
PluTI	GGCGCC	3 cut(s)	66, 584, 618
PpsI	GAGTC	1 cut(s)	501
Ppu21I	YACGTR	1 cut(s)	577
PspFI	CCCAGC	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	64, 565, 582, 616
PstI	CTGCAG	1 cut(s)	249
PstNI	CAGNNNCTG	1 cut(s)	397
PsuI	RGATCY	4 cut(s)	225, 297, 370, 528
PvuII	CAGCTG	1 cut(s)	397
RruI	TCGCGA	1 cut(s)	320
RsaI	GTAC	2 cut(s)	386, 707
RsaNI	GTAC	2 cut(s)	385, 706
RseI	CAYNNNNRTG	1 cut(s)	132
SacII	CCGCGG	2 cut(s)	106, 430
Sau3AI	GATC	9 cut(s)	9, 162, 225, 231, 297, 370, 399, 528, 807
SchI	GAGTC	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	2 cut(s)	259, 651
SfcI	CTRYAG	1 cut(s)	245
SfoI	GGCGCC	3 cut(s)	64, 582, 616
Sfr303I	CCGCGG	2 cut(s)	106, 430
SgrBI	CCGCGG	2 cut(s)	106, 430
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	460, 478, 484, 714
SspDI	GGCGCC	3 cut(s)	62, 580, 614
StyI	CCWWGG	3 cut(s)	117, 351, 618
TaiI	ACGT	5 cut(s)	141, 216, 579, 752, 798
TaqI	TCGA	3 cut(s)	12, 230, 798
TasI	AATT	4 cut(s)	460, 478, 484, 714
TfiI	GAWTC	1 cut(s)	589
TseFI	GTSAC	2 cut(s)	134, 517
TseI	GCWGC	3 cut(s)	244, 247, 394
Tsp45I	GTSAC	2 cut(s)	134, 517
TspDTI	ATGAA	1 cut(s)	295
TspGWI	ACGGA	1 cut(s)	536
XapI	RAATTY	3 cut(s)	460, 484, 714
XmiI	GTMKAC	1 cut(s)	123
ZraI	GACGTC	2 cut(s)	139, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.