Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005401

Physical Location & Seq

Genomic Coordinates Forward (+)

3595794 .. 3609011

Gene Structure 13218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTGAAGCAGGTGTTTGGGAAGGTGTGGAACAAAGGGGTTTATGGCTGTGGAGGAAGCAGAATTAGGCCTTGCTTCTATGTGCCCACTAGTGGTTTCCACAATGCACAGGTTCATCGTGCACCGAGAAGTTTTTTTGGGGTAGAGGATTTCGTTGACGATAACAATAGTCGGCCATACACTTATCAGAAGGAAAAGAAGTCCAAAAATCCACAGAAGCATGTATCATTTAAGCAGCGGACCATAGCATACTTAGAGCCATTTACACTTGATGTGTTCATCTCAAAACGGTTTGTGTCAGCCTCGATCACCCACAGGGTAACATGCAAGCAGGTTGCAGTTGCCGGTACCAACTCCAAAGACATAAAAGCTGCACTCAAGTCTCGATGTGATATACCTGCCTGTATAGCCATCGGCCAAATTTTAGCCGATAGGGCTAGAGAAGCGGATGTCTATACCGCTTCATATACTCCAAGGGACAGAGACAAGTTTGAAGGGAAGATTAGAGCAGTTGTTCAATCCCTCATTGATAGTGGGATTGATGTTAAAATTTATCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030054 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04113 ko04138 map04113 map04138

Pfam Domains

Protein Families

NAF Pkinase

Protein Analysis

187

Amino Acids

21.09

Weight (kDa)

9.66

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	65 - 181	2.3e-07	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51640 AT3G51640 AT3G51640 AT3G51650 AT3G51650 AT3G51650 AT3G51650
fragaria_vesca	FvH4_6g10170 FvH4_6g10170 FvH4_6g10170
malus_domestica	MD04G1172000.v1.1 MD12G1185300.v1.1
prunus_persica	Prupe.6G290600_v2.0.a1 Prupe.6G290600_v2.0.a1
pyrus_communis	pycom04g15200 pycom12g17380
rosa_chinensis	RchiOBHm_Chr3g0460911
rosa_laevigata	RLG00000024966
rosa_multiflora	Rmu_sc0008258.1_g000012 Rmu_sc0021377.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419040
rosa_rugosa	Rorug03G0047000 Rorug03G0047000 Rorug03G0047000
rosa_samantha	Rh3AG104400 Rh3BG108100 Rh3CG109800 Rh3DG109900
rosa_wichuraiana	Rw3G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	322, 406
Acc65I	GGTACC	1 cut(s)	347
AccB1I	GGYRCC	1 cut(s)	347
AciI	CCGC	3 cut(s)	238, 446, 459
AcoI	YGGCCR	2 cut(s)	173, 415
AcsI	RAATTY	2 cut(s)	420, 549
AfaI	GTAC	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	92
AgsI	TTSAA	3 cut(s)	7, 494, 518
AhlI	ACTAGT	1 cut(s)	89
AluBI	AGCT	1 cut(s)	371
AluI	AGCT	1 cut(s)	371
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	387, 477
Alw44I	GTGCAC	1 cut(s)	120
AoxI	GGCC	3 cut(s)	68, 173, 415
ApaLI	GTGCAC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	235, 371
ApoI	RAATTY	2 cut(s)	420, 549
Asp718I	GGTACC	1 cut(s)	347
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	240
BaeGI	GKGCMC	2 cut(s)	87, 124
BanI	GGYRCC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	2 cut(s)	247, 358
BccI	CCATC	1 cut(s)	419
BcoDI	GTCTC	2 cut(s)	387, 477
BcuI	ACTAGT	1 cut(s)	89
BfaI	CTAG	2 cut(s)	90, 438
BfuAI	ACCTGC	2 cut(s)	322, 406
BglI	GCCNNNNNGGC	1 cut(s)	434
BisI	GCNGC	2 cut(s)	236, 372
BlsI	GCNGC	2 cut(s)	237, 373
Bme18I	GGWCC	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	473
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseSI	GKGCMC	2 cut(s)	87, 124
BseXI	GCAGC	2 cut(s)	247, 358
BsgI	GTGCAG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	70, 175, 417
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	2 cut(s)	387, 477
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	70, 175, 417
Bsp1286I	GDGCHC	2 cut(s)	87, 124
Bsp143I	GATC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	238, 446, 459
BspANI	GGCC	3 cut(s)	70, 175, 417
BspLI	GGNNCC	1 cut(s)	349
BspMI	ACCTGC	2 cut(s)	322, 406
BspT107I	GGYRCC	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	473
BssMI	GATC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	473
Bst4CI	ACNGT	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	1 cut(s)	253
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	1 cut(s)	309
BstMAI	GTCTC	2 cut(s)	387, 477
BstMBI	GATC	1 cut(s)	306
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
BstNSI	RCATGY	2 cut(s)	224, 327
BstSLI	GKGCMC	2 cut(s)	87, 124
BstV1I	GCAGC	2 cut(s)	247, 358
BsuRI	GGCC	3 cut(s)	70, 175, 417
BtsCI	GGATG	1 cut(s)	454
BveI	ACCTGC	2 cut(s)	322, 406
Cac8I	GCNNGC	1 cut(s)	329
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	240
Csp6I	GTAC	1 cut(s)	348
CviAII	CATG	2 cut(s)	221, 324
CviQI	GTAC	1 cut(s)	348
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	1 cut(s)	308
DpnII	GATC	1 cut(s)	306
EaeI	YGGCCR	2 cut(s)	173, 415
Eco130I	CCWWGG	1 cut(s)	473
Eco147I	AGGCCT	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	473
ErhI	CCWWGG	1 cut(s)	473
FaeI	CATG	2 cut(s)	224, 327
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	2 cut(s)	220, 323
Fnu4HI	GCNGC	2 cut(s)	236, 372
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	2 cut(s)	236, 372
FspBI	CTAG	2 cut(s)	90, 438
GluI	GCNGC	2 cut(s)	236, 372
HaeIII	GGCC	3 cut(s)	70, 175, 417
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	224, 327
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	122, 157
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	384, 557
Hpy8I	GTNNAC	2 cut(s)	122, 157
HpyAV	CCTTC	3 cut(s)	16, 184, 488
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4V	TGCA	5 cut(s)	107, 122, 327, 338, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	224, 327
KpnI	GGTACC	1 cut(s)	351
Kzo9I	GATC	1 cut(s)	306
LpnPI	CCDG	6 cut(s)	95, 301, 317, 358, 411, 415
Lsp1109I	GCAGC	2 cut(s)	247, 358
MaeI	CTAG	2 cut(s)	90, 438
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	1 cut(s)	308
MboI	GATC	1 cut(s)	306
MboII	GAAGA	1 cut(s)	511
MhlI	GDGCHC	2 cut(s)	87, 124
MluCI	AATT	3 cut(s)	63, 420, 549
MnlI	CCTC	4 cut(s)	47, 139, 313, 533
MseI	TTAA	2 cut(s)	231, 546
MspA1I	CMGCKG	1 cut(s)	238
MspI	CCGG	1 cut(s)	345
MwoI	GCNNNNNNNGC	3 cut(s)	407, 434, 443
NdeII	GATC	1 cut(s)	306
NlaIII	CATG	2 cut(s)	224, 327
NlaIV	GGNNCC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	224, 327
PceI	AGGCCT	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	237, 373
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	240
RsaI	GTAC	1 cut(s)	349
RsaNI	GTAC	1 cut(s)	348
SaqAI	TTAA	2 cut(s)	231, 546
SatI	GCNGC	2 cut(s)	236, 372
Sau3AI	GATC	1 cut(s)	306
Sau96I	GGNCC	1 cut(s)	240
SduI	GDGCHC	2 cut(s)	87, 124
SetI	ASST	6 cut(s)	15, 27, 114, 336, 373, 400
SinI	GGWCC	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SpeI	ACTAGT	1 cut(s)	89
Sse9I	AATT	3 cut(s)	63, 420, 549
SseBI	AGGCCT	1 cut(s)	70
SsiI	CCGC	3 cut(s)	238, 446, 459
SspMI	CTAG	2 cut(s)	90, 438
StuI	AGGCCT	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	473
TaaI	ACNGT	1 cut(s)	291
TaqI	TCGA	3 cut(s)	305, 385, 558
TasI	AATT	3 cut(s)	63, 420, 549
Tru1I	TTAA	2 cut(s)	231, 546
Tru9I	TTAA	2 cut(s)	231, 546
TseI	GCWGC	2 cut(s)	235, 371
TspDTI	ATGAA	3 cut(s)	104, 268, 453
VneI	GTGCAC	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	240
XapI	RAATTY	2 cut(s)	420, 549
XceI	RCATGY	2 cut(s)	224, 327
XspI	CTAG	2 cut(s)	90, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.