Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005401

Physical Location & Seq

Genomic Coordinates Forward (+)

8723988 .. 8730029

Gene Structure 6042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG104400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGTGTATACTTTGTGTGATTCAGAAGTGGTCTCGCCGGGTAGCTACGATGCTTCCTTGGTTAGTTATTCCATTAATAGGACTATGGGCTCTCTCTCAGCTTCTACCGCCGGCTTTTCGATTCGAGATTACTTCGCCCAGGCTCGCCTGTGTTTTTGTGCTCTTGGTTACTCTCTTTTGGTACGAGATTTTGATGCCCCAGCTCTCGGCGTGGAGGGTGCGGCGCAATGCCAGGCTTAGGGAGAGGAAGAGGTTTGAGGCTATAGAGTTGCAGAAGCTGAGGAAAACAGCAACGAGGCGGTGCAGGAATTGCTTGACTCCGTATAGGGATCAGAATCCTGGCGGTGGTCGGTTCATGTGTTCGTATTGTGGACATATTTCTAAGAGACCGGTTTTGGACTTACCTGTGCTCCCTGGGATGGGACTTTCGAATTCGGGGATTATCAGGGATTTGGTTGGAAAGGGCGGAAAGATATTGAATGGGAAGGTGTGGTCTGAGAATGGGTGGATGTGTGGTCAAGATTGGCTGGAGAATGGCAATTGGGTCAGTGGTTCTATAGGTGGGAAATCTACTTACTGGAAGAAGGATGGGAGTAGTGTTTTTGGAGGGGATGAGAATTGTTTGGCAGAGAAGTCTTATTCAGGTGTCGTTATTTTTGCCTGCAAGCTACTGACCTCATTTTTCTTGAGTGTTAGATGGCTTTGGAGAAAGATTTTTAGGATTAGTACATCAGGAGATGATGCTGCATCTGATGCAGAGCATAAAGCAATGTTGGCCAAGAGGGGTGAGAATGGGGTCAACTTTCAAGAGAGTAGAGGAGAAAAGGCACGCAGAAAAGCTGAAGAAAAGAGACAAGCTAGGATAGAGAAGGAGCTCTTAGAGGAGGAAGAGAGAAAGCAAAGGGAGGAAGTTGCTAGGTTGGTGGAGGAACGCAGGAGACTTAGGGATGAGAAAAAGGAAGCTGAAAGAGGAGATCGTGGGAAAACATCGCCACCTGTGATGGAGAGAGATAGTAAGAAGGAAGCAGAAAAGAAACGTCAGGATAGAAGGAAAGATAAGGACAAGGGTTCTAGCAAGAGCAATTCTGATGCAGAAGAGTTGGAAAAGAGAGCAGGTAAGGAGAGTGACCGGAAACGGGACTTTGACAAGAAGAATGACAATGAACGTCGGGAACTTCAGAAATCTGGGACAGATTTTCTCAAGGGTCAAAGCATGGAGGTGGGGTATGGTGCAAAGAATCTATCTGCAAACAATTCAGTGAGGGGAAATGCTGGATCTAGGTACCTGGACCGCATGAGGGGTACAATTTTTTCTTCTTCAAAAGCATTCAGCGGAGGTAGTTTCTTTGGAAAGGGTGCTAATACTACAGTGACAAAAGAAACCAAATCTAGCATTTCCGTGGATCACGTCCATAGTCCTGCCCACAGGAGAGACTTATTTCCACCTGAACGCGTAGCTGCTAGACCTTTTATGAATGGAGATGATAAGAGTATCAGCCGCCCTATTCAGTCTGAATCACAGCCAGGGACAGCACCAAAAAAATCATGGCAGCAATTATTTACTCGTTCATCATCCGTTCCTGCATCCTCGAGTGTAAATGTAATTAGTAGACCAAATGCAAAGTCCCAAACAGAAGTACAAACTCCTGTGATATCTGGTCAACCATCATCAATACAATCTTTTGACAATCCAATTAATTTTGGTCTGCCATCACCATTCACTATATCTCCCTTTCCTAATGGAGTCACTAGCAGCAGTTTAGGCTTTTCTCCTGCAGTTGAACCCATGTTCCCTCGCATTGGAGAAGGGCATCAGGAACCGATACATGAAGAGCCAGAGCTTTTTGAAGACCCATGTTATGTTCCCGATCCAGTATCTTTGCTTGGGCCTGTCTCCGAGTCGCTTGATAATTTTCAGTTAGACATGGGGGCTGGCTTCGTGACAGATGTGGGATTGGAGAGGCCTCGCACATTAAAGAATGTATCTGCTTCTTCTGATCTCAACAAGCCATCTCCAATTGAGTCACCTTTGTCACGAGAAAAATATAATTGTAATCGTGTCCCAAGTACACCAAAGGCCCAGGATATGCATTCTCCACGCCTAGATGATGCAAATGCAAATGATAAGGGTACGTGGCAAATGTGGAATAGTTGTCCTCTTGGTCAGAAAGGTCTAGGTTTATCAGGTGGCCCAGCAAGCTGGCTTTTACCTCCTGAACTGAACAGATCCAACAAGGATGATCTTGTGCACCCTTCATCTCATATGTCACTGTTTTCAACAGAAGAGCAGGTTGTTCCTGGCCCCCATTCTCCTCGGCATCAGAGCATATTCCTTGGTAATGGGCATAATGGTGGGACATTTAGCCCTGTGACTGGTTCAAGTGATCATGATCCTTGGTTACAGAAAGCATTTTTTCCACCATTGTCAACCGCTGAAACCCATTATCCTGTCAAACCTCCAGAGGAAGCTACTAAAAATGAAAGATTTTTTGCGAGTCCCAGCAGATCTACTACCAATCATGCGTTTGAGCTGTCTCCAGGAAATGGCTGGTCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

852

Amino Acids

95.12

Weight (kDa)

9.39

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51640 AT3G51640 AT3G51640 AT3G51650 AT3G51650 AT3G51650 AT3G51650
fragaria_vesca	FvH4_6g10170 FvH4_6g10170 FvH4_6g10170
malus_domestica	MD04G1172000.v1.1 MD12G1185300.v1.1
prunus_persica	Prupe.6G290600_v2.0.a1 Prupe.6G290600_v2.0.a1
pyrus_communis	pycom04g15200 pycom12g17380
rosa_chinensis	RchiOBHm_Chr3g0460911
rosa_laevigata	RLG00000024966
rosa_multiflora	Rmu_sc0008258.1_g000012 Rmu_sc0021377.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419040
rosa_rugosa	Rorug03G0047000 Rorug03G0047000 Rorug03G0047000
rosa_samantha	Rh3AG104400 Rh3BG108100 Rh3CG109800 Rh3DG109900
rosa_wichuraiana	Rw3G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1103, 2278
Acc65I	GGTACC	1 cut(s)	1281
AccB1I	GGYRCC	1 cut(s)	1281
AccB7I	CCANNNNNTGG	1 cut(s)	2543
AccI	GTMKAC	2 cut(s)	7, 1609
AccII	CGCG	1 cut(s)	1452
AciI	CCGC	9 cut(s)	107, 220, 298, 342, 465, 1291, 1332, 1498, 2430
AclWI	GGATC	6 cut(s)	336, 1282, 1410, 1862, 2220, 2384
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	2 cut(s)	861, 1160
AfaI	GTAC	7 cut(s)	182, 727, 1283, 1303, 1638, 2068, 2131
AflIII	ACRYGT	1 cut(s)	1450
AgeI	ACCGGT	1 cut(s)	388
AgsI	TTSAA	7 cut(s)	478, 806, 1320, 1781, 1847, 2277, 2379
AjiI	CACGTC	1 cut(s)	1408
AjnI	CCWGG	9 cut(s)	137, 230, 337, 412, 1284, 1522, 2079, 2296, 2536
AloI	GAACNNNNNNTCC	2 cut(s)	1773, 1805
Alw21I	GWGCWC	4 cut(s)	162, 411, 876, 2250
Alw26I	GTCTC	7 cut(s)	36, 379, 844, 931, 1425, 1897, 2538
Alw44I	GTGCAC	1 cut(s)	2246
AlwI	GGATC	6 cut(s)	336, 1282, 1410, 1862, 2220, 2384
AlwNI	CAGNNNCTG	1 cut(s)	277
Ama87I	CYCGRG	1 cut(s)	1588
AoxI	GGCC	6 cut(s)	774, 1886, 1961, 2076, 2188, 2299
ApaLI	GTGCAC	1 cut(s)	2246
ApeKI	GCWGC	4 cut(s)	743, 1457, 1549, 1752
ApoI	RAATTY	1 cut(s)	430
ArsI	GACNNNNNNTTYG	2 cut(s)	1607, 1639
AseI	ATTAAT	2 cut(s)	74, 1695
AsiGI	ACCGGT	1 cut(s)	388
Asp718I	GGTACC	1 cut(s)	1281
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	6 cut(s)	1288, 1886, 2077, 2189, 2300, 2550
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	3 cut(s)	797, 1704, 2016
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	1 cut(s)	1588
AvaII	GGWCC	2 cut(s)	1288, 2550
BaeGI	GKGCMC	1 cut(s)	2250
BalI	TGGCCA	1 cut(s)	776
BanI	GGYRCC	1 cut(s)	1281
BanII	GRGCYC	2 cut(s)	91, 876
BauI	CACGAG	1 cut(s)	2034
BbsI	GAAGAC	1 cut(s)	1854
Bbv12I	GWGCWC	4 cut(s)	162, 411, 876, 2250
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	4 cut(s)	730, 1444, 1561, 1764
BccI	CCATC	7 cut(s)	412, 581, 690, 994, 1672, 1717, 2017
BciT130I	CCWGG	9 cut(s)	139, 232, 339, 414, 1286, 1524, 2081, 2298, 2538
BclI	TGATCA	1 cut(s)	2383
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	7 cut(s)	36, 379, 844, 931, 1425, 1897, 2538
BfaI	CTAG	9 cut(s)	858, 915, 1071, 1278, 1389, 1461, 1749, 2102, 2174
BfmI	CTRYAG	4 cut(s)	261, 555, 1365, 1773
BfuAI	ACCTGC	2 cut(s)	1103, 2278
BglII	AGATCT	1 cut(s)	2504
BisI	GCNGC	6 cut(s)	221, 744, 1458, 1498, 1550, 1753
BlsI	GCNGC	6 cut(s)	222, 745, 1459, 1499, 1551, 1754
Bme18I	GGWCC	2 cut(s)	1288, 2550
BmeT110I	CYCGRG	1 cut(s)	1588
BmgBI	CACGTC	1 cut(s)	1408
BmgT120I	GGNCC	6 cut(s)	1288, 1886, 2077, 2189, 2300, 2550
BmiI	GGNNCC	3 cut(s)	1283, 1818, 2302
BpiI	GAAGAC	1 cut(s)	1854
BpmI	CTGGAG	3 cut(s)	548, 2442, 2520
Bpu10I	CCTNAGC	2 cut(s)	236, 278
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	2 cut(s)	706, 1184
BpuMI	CCSGG	1 cut(s)	38
BsaAI	YACGTR	1 cut(s)	2133
BsaBI	GATNNNNATC	2 cut(s)	333, 2388
BsaI	GGTCTC	2 cut(s)	36, 379
BsaWI	WCCGGW	2 cut(s)	388, 1128
BsaXI	ACNNNNNCTCC	6 cut(s)	393, 423, 1208, 1238, 1711, 1741
Bse118I	RCCGGY	2 cut(s)	109, 388
Bse1I	ACTGG	3 cut(s)	581, 1871, 2377
Bse3DI	GCAATG	2 cut(s)	232, 774
Bse8I	GATNNNNATC	2 cut(s)	333, 2388
BseBI	CCWGG	9 cut(s)	139, 232, 339, 414, 1286, 1524, 2081, 2298, 2538
BseGI	GGATG	8 cut(s)	423, 513, 592, 616, 952, 1571, 1583, 2242
BseJI	GATNNNNATC	2 cut(s)	333, 2388
BseMI	GCAATG	2 cut(s)	232, 774
BseMII	CTCAG	3 cut(s)	110, 269, 486
BseNI	ACTGG	3 cut(s)	581, 1871, 2377
BseRI	GAGGAG	4 cut(s)	831, 896, 984, 2301
BseSI	GKGCMC	1 cut(s)	2250
BseXI	GCAGC	4 cut(s)	730, 1444, 1561, 1764
BseYI	CCCAGC	3 cut(s)	198, 2191, 2498
BsgI	GTGCAG	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	1452
BshFI	GGCC	6 cut(s)	776, 1888, 1963, 2078, 2190, 2301
BshNI	GGYRCC	1 cut(s)	1281
BshTI	ACCGGT	1 cut(s)	388
BsiHKAI	GWGCWC	4 cut(s)	162, 411, 876, 2250
BsiHKCI	CYCGRG	1 cut(s)	1588
BsiSI	CCGG	4 cut(s)	37, 110, 389, 1129
BslFI	GGGAC	8 cut(s)	435, 1151, 1201, 1540, 1609, 2045, 2368, 2481
BsmAI	GTCTC	7 cut(s)	36, 379, 844, 931, 1425, 1897, 2538
BsmFI	GGGAC	8 cut(s)	435, 1151, 1201, 1540, 1609, 2045, 2368, 2481
BsmI	GAATGC	2 cut(s)	1325, 2089
BsnI	GGCC	6 cut(s)	776, 1888, 1963, 2078, 2190, 2301
Bso31I	GGTCTC	2 cut(s)	36, 379
BsoBI	CYCGRG	1 cut(s)	1588
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	5 cut(s)	91, 162, 411, 876, 2250
BspACI	CCGC	9 cut(s)	107, 220, 298, 342, 465, 1291, 1332, 1498, 2430
BspANI	GGCC	6 cut(s)	776, 1888, 1963, 2078, 2190, 2301
BspCNI	CTCAG	3 cut(s)	109, 270, 487
BspFNI	CGCG	1 cut(s)	1452
BspHI	TCATGA	1 cut(s)	2386
BspLI	GGNNCC	3 cut(s)	1283, 1818, 2302
BspMAI	CTGCAG	1 cut(s)	1777
BspMI	ACCTGC	2 cut(s)	1103, 2278
BspPI	GGATC	6 cut(s)	336, 1282, 1410, 1862, 2220, 2384
BspQI	GCTCTTC	2 cut(s)	1824, 2277
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	1281
BspTNI	GGTCTC	2 cut(s)	36, 379
BsrDI	GCAATG	2 cut(s)	232, 774
BsrFI	RCCGGY	2 cut(s)	109, 388
BsrI	ACTGG	3 cut(s)	581, 1871, 2377
BssAI	RCCGGY	2 cut(s)	109, 388
BssNAI	GTATAC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	2034
BssT1I	CCWWGG	3 cut(s)	56, 2332, 2393
Bst1107I	GTATAC	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	2034
Bst2UI	CCWGG	9 cut(s)	139, 232, 339, 414, 1286, 1524, 2081, 2298, 2538
Bst4CI	ACNGT	2 cut(s)	1369, 2271
Bst6I	CTCTTC	5 cut(s)	242, 882, 1089, 1824, 2277
BstAPI	GCANNNNNTGC	2 cut(s)	309, 752
BstBAI	YACGTR	1 cut(s)	2133
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	8 cut(s)	111, 144, 661, 665, 829, 1933, 2197, 2201
BstDEI	CTNAG	7 cut(s)	96, 236, 278, 381, 495, 877, 941
BstDSI	CCRYGG	1 cut(s)	1398
BstF5I	GGATG	8 cut(s)	423, 513, 592, 616, 952, 1571, 1583, 2242
BstFNI	CGCG	1 cut(s)	1452
BstHHI	GCGC	1 cut(s)	225
BstMAI	GTCTC	7 cut(s)	36, 379, 844, 931, 1425, 1897, 2538
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 309, 752, 773, 1761, 2196
BstNI	CCWGG	9 cut(s)	139, 232, 339, 414, 1286, 1524, 2081, 2298, 2538
BstSFI	CTRYAG	4 cut(s)	261, 555, 1365, 1773
BstSLI	GKGCMC	1 cut(s)	2250
BstUI	CGCG	1 cut(s)	1452
BstV1I	GCAGC	4 cut(s)	730, 1444, 1561, 1764
BstV2I	GAAGAC	1 cut(s)	1854
BstX2I	RGATCY	3 cut(s)	1274, 2225, 2504
BstXI	CCANNNNNNTGG	1 cut(s)	2199
BstYI	RGATCY	3 cut(s)	1274, 2225, 2504
BstZ17I	GTATAC	1 cut(s)	8
BsuRI	GGCC	6 cut(s)	776, 1888, 1963, 2078, 2190, 2301
BtgI	CCRYGG	1 cut(s)	1398
BtgZI	GCGATG	1 cut(s)	972
BtrI	CACGTC	1 cut(s)	1408
BtsCI	GGATG	8 cut(s)	423, 513, 592, 616, 952, 1571, 1583, 2242
BtsIMutI	CAGTG	4 cut(s)	553, 1263, 1374, 2267
BveI	ACCTGC	2 cut(s)	1103, 2278
Cac8I	GCNNGC	8 cut(s)	111, 144, 661, 665, 829, 1933, 2197, 2201
CaiI	CAGNNNCTG	1 cut(s)	277
CciI	TCATGA	1 cut(s)	2386
CfoI	GCGC	1 cut(s)	225
Cfr10I	RCCGGY	2 cut(s)	109, 388
Cfr13I	GGNCC	6 cut(s)	1288, 1886, 2077, 2189, 2300, 2550
Csp6I	GTAC	7 cut(s)	181, 726, 1282, 1302, 1637, 2067, 2130
CspAI	ACCGGT	1 cut(s)	388
CviQI	GTAC	7 cut(s)	181, 726, 1282, 1302, 1637, 2067, 2130
DdeI	CTNAG	7 cut(s)	96, 236, 278, 381, 495, 877, 941
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	5 cut(s)	242, 882, 1089, 1824, 2277
EarI	CTCTTC	5 cut(s)	242, 882, 1089, 1824, 2277
EciI	GGCGGA	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	874
Eco130I	CCWWGG	3 cut(s)	56, 2332, 2393
Eco147I	AGGCCT	1 cut(s)	1963
Eco24I	GRGCYC	2 cut(s)	91, 876
Eco31I	GGTCTC	2 cut(s)	36, 379
Eco32I	GATATC	1 cut(s)	1653
Eco47I	GGWCC	2 cut(s)	1288, 2550
Eco53kI	GAGCTC	1 cut(s)	874
Eco57I	CTGAAG	2 cut(s)	861, 1160
Eco88I	CYCGRG	1 cut(s)	1588
EcoICRI	GAGCTC	1 cut(s)	874
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	9 cut(s)	137, 230, 337, 412, 1284, 1522, 2079, 2296, 2536
EcoRV	GATATC	1 cut(s)	1653
EcoT14I	CCWWGG	3 cut(s)	56, 2332, 2393
EcoT22I	ATGCAT	1 cut(s)	2091
EcoT38I	GRGCYC	2 cut(s)	91, 876
ErhI	CCWWGG	3 cut(s)	56, 2332, 2393
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FaqI	GGGAC	8 cut(s)	435, 1151, 1201, 1540, 1609, 2045, 2368, 2481
FauNDI	CATATG	1 cut(s)	2262
FbaI	TGATCA	1 cut(s)	2383
FblI	GTMKAC	2 cut(s)	7, 1609
Fnu4HI	GCNGC	6 cut(s)	221, 744, 1458, 1498, 1550, 1753
FokI	GGATG	8 cut(s)	430, 520, 599, 623, 959, 1558, 1570, 2249
FriOI	GRGCYC	2 cut(s)	91, 876
Fsp4HI	GCNGC	6 cut(s)	221, 744, 1458, 1498, 1550, 1753
FspBI	CTAG	9 cut(s)	858, 915, 1071, 1278, 1389, 1461, 1749, 2102, 2174
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	6 cut(s)	221, 744, 1458, 1498, 1550, 1753
GsaI	CCCAGC	3 cut(s)	202, 2195, 2502
GsuI	CTGGAG	3 cut(s)	548, 2442, 2520
HaeIII	GGCC	6 cut(s)	776, 1888, 1963, 2078, 2190, 2301
HapII	CCGG	4 cut(s)	37, 110, 389, 1129
HhaI	GCGC	1 cut(s)	225
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	3 cut(s)	799, 1661, 2427
HindII	GTYRAC	3 cut(s)	799, 1661, 2427
HpaII	CCGG	4 cut(s)	37, 110, 389, 1129
HphI	GGTGA	3 cut(s)	797, 1704, 2016
Hpy166II	GTNNAC	8 cut(s)	8, 371, 799, 1610, 1661, 2069, 2248, 2427
Hpy8I	GTNNAC	8 cut(s)	8, 371, 799, 1610, 1661, 2069, 2248, 2427
Hpy99I	CGWCG	1 cut(s)	1170
HpyAV	CCTTC	7 cut(s)	478, 577, 862, 1012, 1041, 1799, 2262
HpyCH4III	ACNGT	2 cut(s)	1369, 2271
HpyCH4IV	ACGT	4 cut(s)	1036, 1165, 1407, 2132
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 309, 752, 773, 1761, 2196
HpyF3I	CTNAG	7 cut(s)	96, 236, 278, 381, 495, 877, 941
HpySE526I	ACGT	4 cut(s)	1036, 1165, 1407, 2132
HspAI	GCGC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	1285
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	2383
LguI	GCTCTTC	2 cut(s)	1824, 2277
LmnI	GCTCC	2 cut(s)	414, 871
Lsp1109I	GCAGC	4 cut(s)	730, 1444, 1561, 1764
MaeI	CTAG	9 cut(s)	858, 915, 1071, 1278, 1389, 1461, 1749, 2102, 2174
MaeII	ACGT	4 cut(s)	1036, 1165, 1407, 2132
MfeI	CAATTG	2 cut(s)	538, 2016
MflI	RGATCY	3 cut(s)	1274, 2225, 2504
MhlI	GDGCHC	5 cut(s)	91, 162, 411, 876, 2250
MlsI	TGGCCA	1 cut(s)	776
MluI	ACGCGT	1 cut(s)	1450
MluNI	TGGCCA	1 cut(s)	776
MlyI	GAGTC	5 cut(s)	310, 1752, 1907, 2030, 2503
MmeI	TCCRAC	3 cut(s)	436, 1080, 2253
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	2091
MroNI	GCCGGC	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	776
MseI	TTAA	3 cut(s)	74, 1695, 1973
MslI	CAYNNNNRTG	3 cut(s)	1217, 1397, 2349
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	2 cut(s)	1332, 2432
MspI	CCGG	4 cut(s)	37, 110, 389, 1129
MunI	CAATTG	2 cut(s)	538, 2016
Mva1269I	GAATGC	2 cut(s)	1325, 2089
MvaI	CCWGG	9 cut(s)	139, 232, 339, 414, 1286, 1524, 2081, 2298, 2538
MvnI	CGCG	1 cut(s)	1452
MwoI	GCNNNNNNNGC	6 cut(s)	106, 309, 752, 773, 1761, 2196
NaeI	GCCGGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	38
NdeI	CATATG	1 cut(s)	2262
NgoMIV	GCCGGC	1 cut(s)	109
NlaIV	GGNNCC	3 cut(s)	1283, 1818, 2302
NmeAIII	GCCGAG	2 cut(s)	185, 2293
NmuCI	GTSAC	8 cut(s)	1124, 1369, 1744, 1939, 2022, 2031, 2265, 2368
NsiI	ATGCAT	1 cut(s)	2091
NspV	TTCGAA	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	1588
PagI	TCATGA	1 cut(s)	2386
PasI	CCCWGGG	1 cut(s)	413
PceI	AGGCCT	1 cut(s)	1963
PciSI	GCTCTTC	2 cut(s)	1824, 2277
PctI	GAATGC	2 cut(s)	1325, 2089
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	5 cut(s)	19, 120, 334, 1237, 1514
PflMI	CCANNNNNTGG	1 cut(s)	2543
PfoI	TCCNGGA	1 cut(s)	2536
PinAI	ACCGGT	1 cut(s)	388
PkrI	GCNGC	6 cut(s)	222, 745, 1459, 1499, 1551, 1754
PleI	GAGTC	5 cut(s)	310, 1751, 1906, 2029, 2502
PpsI	GAGTC	5 cut(s)	310, 1751, 1906, 2029, 2502
Ppu21I	YACGTR	1 cut(s)	2133
PshBI	ATTAAT	2 cut(s)	74, 1695
Psp124BI	GAGCTC	1 cut(s)	876
Psp6I	CCWGG	9 cut(s)	137, 230, 337, 412, 1284, 1522, 2079, 2296, 2536
PspFI	CCCAGC	3 cut(s)	198, 2191, 2498
PspGI	CCWGG	9 cut(s)	137, 230, 337, 412, 1284, 1522, 2079, 2296, 2536
PspN4I	GGNNCC	3 cut(s)	1283, 1818, 2302
PspPI	GGNCC	6 cut(s)	1288, 1886, 2077, 2189, 2300, 2550
PspXI	VCTCGAGB	1 cut(s)	1588
PstI	CTGCAG	1 cut(s)	1777
PstNI	CAGNNNCTG	1 cut(s)	277
PsuI	RGATCY	3 cut(s)	1274, 2225, 2504
RsaI	GTAC	7 cut(s)	182, 727, 1283, 1303, 1638, 2068, 2131
RsaNI	GTAC	7 cut(s)	181, 726, 1282, 1302, 1637, 2067, 2130
RseI	CAYNNNNRTG	3 cut(s)	1217, 1397, 2349
SacI	GAGCTC	1 cut(s)	876
SapI	GCTCTTC	2 cut(s)	1824, 2277
SaqAI	TTAA	3 cut(s)	74, 1695, 1973
SatI	GCNGC	6 cut(s)	221, 744, 1458, 1498, 1550, 1753
Sau96I	GGNCC	6 cut(s)	1288, 1886, 2077, 2189, 2300, 2550
SchI	GAGTC	5 cut(s)	310, 1752, 1907, 2030, 2503
SduI	GDGCHC	5 cut(s)	91, 162, 411, 876, 2250
SfcI	CTRYAG	4 cut(s)	261, 555, 1365, 1773
Sfr274I	CTCGAG	1 cut(s)	1588
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	2 cut(s)	1288, 2550
SlaI	CTCGAG	1 cut(s)	1588
SmiMI	CAYNNNNRTG	3 cut(s)	1217, 1397, 2349
SmlI	CTYRAG	3 cut(s)	685, 1199, 1588
SmoI	CTYRAG	3 cut(s)	685, 1199, 1588
SseBI	AGGCCT	1 cut(s)	1963
SsiI	CCGC	9 cut(s)	107, 220, 298, 342, 465, 1291, 1332, 1498, 2430
SspMI	CTAG	9 cut(s)	858, 915, 1071, 1278, 1389, 1461, 1749, 2102, 2174
SstI	GAGCTC	1 cut(s)	876
StuI	AGGCCT	1 cut(s)	1963
StyI	CCWWGG	3 cut(s)	56, 2332, 2393
TaaI	ACNGT	2 cut(s)	1369, 2271
TaiI	ACGT	4 cut(s)	1039, 1168, 1410, 2135
TaqI	TCGA	4 cut(s)	118, 123, 428, 1589
TatI	WGTACW	3 cut(s)	725, 1636, 2066
TauI	GCSGC	2 cut(s)	223, 1500
TfiI	GAWTC	5 cut(s)	19, 120, 334, 1237, 1514
Tru1I	TTAA	3 cut(s)	74, 1695, 1973
Tru9I	TTAA	3 cut(s)	74, 1695, 1973
TscAI	CASTG	4 cut(s)	553, 1263, 1374, 2274
TseFI	GTSAC	8 cut(s)	1124, 1369, 1744, 1939, 2022, 2031, 2265, 2368
TseI	GCWGC	4 cut(s)	743, 1457, 1549, 1752
Tsp45I	GTSAC	8 cut(s)	1124, 1369, 1744, 1939, 2022, 2031, 2265, 2368
TspDTI	ATGAA	7 cut(s)	343, 1176, 1487, 1557, 1842, 2244, 2493
TspGWI	ACGGA	3 cut(s)	309, 1387, 1564
TspRI	CASTG	4 cut(s)	553, 1263, 1374, 2274
Van91I	CCANNNNNTGG	1 cut(s)	2543
VneI	GTGCAC	1 cut(s)	2246
VpaK11BI	GGWCC	2 cut(s)	1288, 2550
VspI	ATTAAT	2 cut(s)	74, 1695
XapI	RAATTY	1 cut(s)	430
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1542, 2544
XhoI	CTCGAG	1 cut(s)	1588
XmiI	GTMKAC	2 cut(s)	7, 1609
XspI	CTAG	9 cut(s)	858, 915, 1071, 1278, 1389, 1461, 1749, 2102, 2174
Zsp2I	ATGCAT	1 cut(s)	2091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.