Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021377.1

Orthogroup ID

OG0005401

Physical Location & Seq

Genomic Coordinates Forward (+)

11860 .. 16024

Gene Structure 4165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021377.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2640 bp

atgcttccttggttagttattccattaataggactatgggctctctctcagcttctaccgccggcttttcgattcgagattacttcgcccaggctcgcctgtgtttttgtgctcttggttactctcttttggtacgagattttgatgccccagctctcggcgtggagggtgcggcgcaatgccaggcttagggagaggaagaggtttgaggcgatagagttgcagaagctgaggaaaacagcaacgaggcggtgcaggaattgcttgactccgtatagggatcagaatcctggcggtggtcggtttatgtgttcgtattgtggacatatttctaagagaccggttttggacttacctgtgctccctgggatcggaatttcgaattcggggattatcagggatttggttggaaagggcggaaagatattgaatgggaaggtgtggtctgagaatggatggatgtgtggtcaagattggttggagaatggcaattgggtcagtggttctataggtgggaaatctagttactggaagaaggatgggagtagtgtttttggaggggatgagaattgtttggcagagaagtcttattcaggtgtcgttatttttgcctgcaagctactgacctcatttttcttgagtgttagatggcttgggagaaagatttttaggattagtacatcaggagatgatgctgcatctgatgcggagcataaagcaatgttggccaagaggggtgagaatggggtcaactttcaagagagtagaggagaaaaggcacgcagaaaagctgaagaaaagagacaagctaggatagagaaggagctcttagaggaggaagagagaaagcaaagggaggaagttgcaaggttggtggaggaacgcaggagacttagggatgagaaaaaggaagctgaaagaggagatcgtgggaaaacatcgccacctttgagggagaaagatagtaagaaggaagcagaaaagaaacgtcaggatagaaggaaagataaagacaagggttctagcaagagcaattctgatgcagaagagttggaaaagagagcaggtaaggagagtgaccggaaacgggactttgacaagaagaatgacaatgaacgtcgggaacttcagaaatctgggacagattttctcaagggtcaaagcatggaggtggggtatggtgcaaagaatctatctgcaaacaattcagtgaggggaaatgctggatctaggtacctggaccgcatgaggggtacaattttttcttcttcaaaagcattcagcggaggtagtttctttggaaagggtgctaatactacagtgacaaaagaaaccaaatctagcatttccgtggatcacgtccatagtcctgcccacaggagagacttatttccaccggaacgcgtagctgctagaccttttatgaatggagatgataagagtatcagccgccctattcagtctgaatcacagccagggacagcaccaaaaaaatcatggcagcaattatttactcgttcatcatccgttcctgcatcctcgagtgtaaatgtaattagtagaccaaatgcaaagtcccaaacagaagtacaaactcctgtgatatctggtcaaccatcatcaatacaatcttttgacaatccaattaattttggtctgccatcaccattcactatatctccctttcctaatggagtcactagcagcagtttaggcttttctcctgcagttgaacccatgttccatcgcattggagaagggcatcatgaaccgatacatgaagagccagagctttttgaagacccatgttatgttcccgatccagtatctttgcttgggcctgtctccgagtcgcttgataattttcagttagacatgggggctggctttgtgacggatgtgggattggagaggcctcgcacattaaagaatgtatctgcttcttctgatctcaacaagccatctccaattgagtcacctttgtcacgagaaaaatataattgtaatcgtgttccaagtacaccaaaggcccaggatatgcattctccacccctagatgatgcaaatgcaaatgataagggtacgtggcaaatgtggaatagttgtcctcttggtcaggaaggtctaggtttatcaggtggcccagccagctggcttttaccttctgaactgaacagatccaacaaggatgatcttgtgcacccttcatctcatatgtcactgttttcaacagaagagcaggttgtttctggcccccattctcctcggcatcagagcatattccttggtaatgggcataatggtgggacatttagccctgtgactggttcaagtgatcatgatccttggttacagaaagcattttttccaccattgtcaaccgctgaaacccattatcctgtcaaaccttcagaggaagctactaaaaatgaaagattttttgcgagtcccagcagatctacaaccaatcatgcgtttgagctgtctccaagaaatggctggtccaagaaggaatcgattgaatgcggtgtgcagggtacagcaggggaaggtgttggaaagcaatcagttctgaggcctcatgtcaggggtccttatccgccaaccccagatgtacagtcactttggtcttatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

879

Amino Acids

97.73

Weight (kDa)

9.26

Isoelectric Point (pI)

60.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51640 AT3G51640 AT3G51640 AT3G51650 AT3G51650 AT3G51650 AT3G51650
fragaria_vesca	FvH4_6g10170 FvH4_6g10170 FvH4_6g10170
malus_domestica	MD04G1172000.v1.1 MD12G1185300.v1.1
prunus_persica	Prupe.6G290600_v2.0.a1 Prupe.6G290600_v2.0.a1
pyrus_communis	pycom04g15200 pycom12g17380
rosa_chinensis	RchiOBHm_Chr3g0460911
rosa_laevigata	RLG00000024966
rosa_multiflora	Rmu_sc0008258.1_g000012 Rmu_sc0021377.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419040
rosa_rugosa	Rorug03G0047000 Rorug03G0047000 Rorug03G0047000
rosa_samantha	Rh3AG104400 Rh3BG108100 Rh3CG109800 Rh3DG109900
rosa_wichuraiana	Rw3G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1055, 2230
Acc65I	GGTACC	1 cut(s)	1233
AccB1I	GGYRCC	1 cut(s)	1233
AccB7I	CCANNNNNTGG	1 cut(s)	2495
AccI	GTMKAC	1 cut(s)	1561
AccII	CGCG	1 cut(s)	1404
AclWI	GGATC	7 cut(s)	288, 377, 1234, 1362, 1814, 2172, 2336
AcoI	YGGCCR	1 cut(s)	726
AcsI	RAATTY	2 cut(s)	375, 382
AcuI	CTGAAG	3 cut(s)	813, 1112, 2394
AfaI	GTAC	9 cut(s)	134, 679, 1235, 1255, 1590, 2020, 2083, 2539, 2616
AfiI	CCNNNNNNNGG	9 cut(s)	29, 157, 189, 296, 371, 1087, 1249, 2324, 2495
AflIII	ACRYGT	1 cut(s)	1402
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	8 cut(s)	430, 758, 1272, 1733, 1799, 2229, 2331, 2522
AjiI	CACGTC	1 cut(s)	1360
AjnI	CCWGG	7 cut(s)	89, 182, 289, 364, 1236, 1474, 2031
AloI	GAACNNNNNNTCC	2 cut(s)	1725, 1757
Alw21I	GWGCWC	4 cut(s)	114, 363, 828, 2202
Alw26I	GTCTC	6 cut(s)	331, 796, 883, 1377, 1849, 2490
Alw44I	GTGCAC	1 cut(s)	2198
AlwI	GGATC	7 cut(s)	288, 377, 1234, 1362, 1814, 2172, 2336
AlwNI	CAGNNNCTG	1 cut(s)	229
Ama87I	CYCGRG	1 cut(s)	1540
AoxI	GGCC	7 cut(s)	726, 1838, 1913, 2028, 2140, 2251, 2576
ApaLI	GTGCAC	1 cut(s)	2198
ApeKI	GCWGC	4 cut(s)	695, 1409, 1501, 1704
ApoI	RAATTY	2 cut(s)	375, 382
ArsI	GACNNNNNNTTYG	2 cut(s)	1559, 1591
AseI	ATTAAT	2 cut(s)	26, 1647
AsiGI	ACCGGT	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	1233
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	7 cut(s)	1240, 1838, 2029, 2141, 2252, 2502, 2591
AsuHPI	GGTGA	3 cut(s)	749, 1656, 1968
AsuII	TTCGAA	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	1540
AvaII	GGWCC	3 cut(s)	1240, 2502, 2591
BaeGI	GKGCMC	1 cut(s)	2202
BalI	TGGCCA	1 cut(s)	728
BanI	GGYRCC	1 cut(s)	1233
BanII	GRGCYC	2 cut(s)	43, 828
BauI	CACGAG	1 cut(s)	1986
BbsI	GAAGAC	1 cut(s)	1806
Bbv12I	GWGCWC	4 cut(s)	114, 363, 828, 2202
BbvCI	CCTCAGC	1 cut(s)	230
BbvI	GCAGC	4 cut(s)	682, 1396, 1513, 1716
BccI	CCATC	7 cut(s)	450, 533, 642, 1624, 1669, 1752, 1969
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
BclI	TGATCA	1 cut(s)	2335
BcoDI	GTCTC	6 cut(s)	331, 796, 883, 1377, 1849, 2490
BfaI	CTAG	9 cut(s)	522, 810, 1023, 1230, 1341, 1413, 1701, 2054, 2126
BfmI	CTRYAG	3 cut(s)	507, 1317, 1725
BfuAI	ACCTGC	2 cut(s)	1055, 2230
BglII	AGATCT	1 cut(s)	2456
BisI	GCNGC	6 cut(s)	173, 696, 1410, 1450, 1502, 1705
BlsI	GCNGC	6 cut(s)	174, 697, 1411, 1451, 1503, 1706
Bme1390I	CCNGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
Bme18I	GGWCC	3 cut(s)	1240, 2502, 2591
BmeT110I	CYCGRG	1 cut(s)	1540
BmgBI	CACGTC	1 cut(s)	1360
BmgT120I	GGNCC	7 cut(s)	1240, 1838, 2029, 2141, 2252, 2502, 2591
BmiI	GGNNCC	3 cut(s)	1235, 2254, 2592
BmrFI	CCNGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
BmsI	GCATC	9 cut(s)	135, 682, 694, 707, 1030, 1544, 1771, 2050, 2278
BpiI	GAAGAC	1 cut(s)	1806
Bpu10I	CCTNAGC	2 cut(s)	188, 230
Bpu14I	TTCGAA	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	658, 1136
Bsa29I	ATCGAT	1 cut(s)	2516
BsaAI	YACGTR	1 cut(s)	2085
BsaBI	GATNNNNATC	2 cut(s)	285, 2340
BsaI	GGTCTC	1 cut(s)	331
BsaWI	WCCGGW	3 cut(s)	340, 1080, 1396
BsaXI	ACNNNNNCTCC	6 cut(s)	345, 375, 1160, 1190, 1663, 1693
Bsc4I	CCNNNNNNNGG	9 cut(s)	29, 157, 189, 296, 371, 1087, 1249, 2324, 2495
Bse118I	RCCGGY	2 cut(s)	61, 340
Bse1I	ACTGG	3 cut(s)	533, 1823, 2329
Bse3DI	GCAATG	2 cut(s)	184, 726
Bse8I	GATNNNNATC	2 cut(s)	285, 2340
BseBI	CCWGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
BseCI	ATCGAT	1 cut(s)	2516
BseGI	GGATG	9 cut(s)	461, 465, 544, 568, 904, 1523, 1535, 1903, 2194
BseJI	GATNNNNATC	2 cut(s)	285, 2340
BseLI	CCNNNNNNNGG	9 cut(s)	29, 157, 189, 296, 371, 1087, 1249, 2324, 2495
BseMI	GCAATG	2 cut(s)	184, 726
BseMII	CTCAG	4 cut(s)	62, 221, 438, 2564
BseNI	ACTGG	3 cut(s)	533, 1823, 2329
BseRI	GAGGAG	4 cut(s)	783, 848, 936, 2253
BseSI	GKGCMC	1 cut(s)	2202
BseXI	GCAGC	4 cut(s)	682, 1396, 1513, 1716
BseYI	CCCAGC	3 cut(s)	150, 2143, 2450
BsgI	GTGCAG	2 cut(s)	274, 2552
Bsh1236I	CGCG	1 cut(s)	1404
BshFI	GGCC	7 cut(s)	728, 1840, 1915, 2030, 2142, 2253, 2578
BshNI	GGYRCC	1 cut(s)	1233
BshTI	ACCGGT	1 cut(s)	340
BshVI	ATCGAT	1 cut(s)	2516
BsiHKAI	GWGCWC	4 cut(s)	114, 363, 828, 2202
BsiHKCI	CYCGRG	1 cut(s)	1540
BsiSI	CCGG	4 cut(s)	62, 341, 1081, 1397
BslFI	GGGAC	6 cut(s)	1103, 1153, 1492, 1561, 2320, 2433
BslI	CCNNNNNNNGG	9 cut(s)	29, 157, 189, 296, 371, 1087, 1249, 2324, 2495
BsmAI	GTCTC	6 cut(s)	331, 796, 883, 1377, 1849, 2490
BsmFI	GGGAC	6 cut(s)	1103, 1153, 1492, 1561, 2320, 2433
BsmI	GAATGC	3 cut(s)	1277, 2041, 2528
BsnI	GGCC	7 cut(s)	728, 1840, 1915, 2030, 2142, 2253, 2578
Bso31I	GGTCTC	1 cut(s)	331
BsoBI	CYCGRG	1 cut(s)	1540
Bsp119I	TTCGAA	1 cut(s)	380
Bsp1286I	GDGCHC	5 cut(s)	43, 114, 363, 828, 2202
Bsp1407I	TGTACA	1 cut(s)	2614
BspANI	GGCC	7 cut(s)	728, 1840, 1915, 2030, 2142, 2253, 2578
BspCNI	CTCAG	4 cut(s)	61, 222, 439, 2565
BspDI	ATCGAT	1 cut(s)	2516
BspFNI	CGCG	1 cut(s)	1404
BspHI	TCATGA	2 cut(s)	1765, 2338
BspLI	GGNNCC	3 cut(s)	1235, 2254, 2592
BspMAI	CTGCAG	1 cut(s)	1729
BspMI	ACCTGC	2 cut(s)	1055, 2230
BspPI	GGATC	7 cut(s)	288, 377, 1234, 1362, 1814, 2172, 2336
BspQI	GCTCTTC	2 cut(s)	1776, 2229
BspT104I	TTCGAA	1 cut(s)	380
BspT107I	GGYRCC	1 cut(s)	1233
BspTNI	GGTCTC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	184, 726
BsrFI	RCCGGY	2 cut(s)	61, 340
BsrGI	TGTACA	1 cut(s)	2614
BsrI	ACTGG	3 cut(s)	533, 1823, 2329
BssAI	RCCGGY	2 cut(s)	61, 340
BssSI	CACGAG	1 cut(s)	1986
BssT1I	CCWWGG	3 cut(s)	8, 2284, 2345
Bst2BI	CACGAG	1 cut(s)	1986
Bst2UI	CCWGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
Bst4CI	ACNGT	3 cut(s)	1321, 2223, 2619
Bst6I	CTCTTC	5 cut(s)	194, 834, 1041, 1776, 2229
BstAPI	GCANNNNNTGC	2 cut(s)	261, 704
BstAUI	TGTACA	1 cut(s)	2614
BstBAI	YACGTR	1 cut(s)	2085
BstBI	TTCGAA	1 cut(s)	380
BstC8I	GCNNGC	8 cut(s)	63, 96, 613, 617, 781, 1885, 2149, 2153
BstDEI	CTNAG	8 cut(s)	48, 188, 230, 333, 447, 829, 893, 2573
BstDSI	CCRYGG	1 cut(s)	1350
BstF5I	GGATG	9 cut(s)	461, 465, 544, 568, 904, 1523, 1535, 1903, 2194
BstFNI	CGCG	1 cut(s)	1404
BstHHI	GCGC	1 cut(s)	177
BstMAI	GTCTC	6 cut(s)	331, 796, 883, 1377, 1849, 2490
BstMWI	GCNNNNNNNGC	6 cut(s)	58, 261, 704, 725, 1713, 2148
BstNI	CCWGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
BstSCI	CCNGG	7 cut(s)	89, 182, 289, 364, 1236, 1474, 2031
BstSFI	CTRYAG	3 cut(s)	507, 1317, 1725
BstSLI	GKGCMC	1 cut(s)	2202
BstUI	CGCG	1 cut(s)	1404
BstV1I	GCAGC	4 cut(s)	682, 1396, 1513, 1716
BstV2I	GAAGAC	1 cut(s)	1806
BstX2I	RGATCY	3 cut(s)	1226, 2177, 2456
BstXI	CCANNNNNNTGG	2 cut(s)	1751, 2151
BstYI	RGATCY	3 cut(s)	1226, 2177, 2456
Bsu15I	ATCGAT	1 cut(s)	2516
BsuRI	GGCC	7 cut(s)	728, 1840, 1915, 2030, 2142, 2253, 2578
BsuTUI	ATCGAT	1 cut(s)	2516
BtgI	CCRYGG	1 cut(s)	1350
BtgZI	GCGATG	2 cut(s)	924, 1730
BtrI	CACGTC	1 cut(s)	1360
BtsCI	GGATG	9 cut(s)	461, 465, 544, 568, 904, 1523, 1535, 1903, 2194
BtsIMutI	CAGTG	4 cut(s)	505, 1215, 1326, 2219
BveI	ACCTGC	2 cut(s)	1055, 2230
Cac8I	GCNNGC	8 cut(s)	63, 96, 613, 617, 781, 1885, 2149, 2153
CaiI	CAGNNNCTG	1 cut(s)	229
CciI	TCATGA	2 cut(s)	1765, 2338
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	2 cut(s)	61, 340
Cfr13I	GGNCC	7 cut(s)	1240, 1838, 2029, 2141, 2252, 2502, 2591
ClaI	ATCGAT	1 cut(s)	2516
Csp6I	GTAC	9 cut(s)	133, 678, 1234, 1254, 1589, 2019, 2082, 2538, 2615
CspAI	ACCGGT	1 cut(s)	340
CspCI	CAANNNNNGTGG	2 cut(s)	855, 890
CviQI	GTAC	9 cut(s)	133, 678, 1234, 1254, 1589, 2019, 2082, 2538, 2615
DdeI	CTNAG	8 cut(s)	48, 188, 230, 333, 447, 829, 893, 2573
EaeI	YGGCCR	1 cut(s)	726
Eam1104I	CTCTTC	5 cut(s)	194, 834, 1041, 1776, 2229
EarI	CTCTTC	5 cut(s)	194, 834, 1041, 1776, 2229
EciI	GGCGGA	2 cut(s)	432, 2589
Ecl136II	GAGCTC	1 cut(s)	826
Eco130I	CCWWGG	3 cut(s)	8, 2284, 2345
Eco147I	AGGCCT	2 cut(s)	1915, 2578
Eco24I	GRGCYC	2 cut(s)	43, 828
Eco31I	GGTCTC	1 cut(s)	331
Eco32I	GATATC	1 cut(s)	1605
Eco47I	GGWCC	3 cut(s)	1240, 2502, 2591
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	3 cut(s)	813, 1112, 2394
Eco88I	CYCGRG	1 cut(s)	1540
EcoICRI	GAGCTC	1 cut(s)	826
EcoO109I	RGGNCCY	1 cut(s)	2591
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	7 cut(s)	89, 182, 289, 364, 1236, 1474, 2031
EcoRV	GATATC	1 cut(s)	1605
EcoT14I	CCWWGG	3 cut(s)	8, 2284, 2345
EcoT22I	ATGCAT	1 cut(s)	2043
EcoT38I	GRGCYC	2 cut(s)	43, 828
ErhI	CCWWGG	3 cut(s)	8, 2284, 2345
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	6 cut(s)	1103, 1153, 1492, 1561, 2320, 2433
FauNDI	CATATG	1 cut(s)	2214
FbaI	TGATCA	1 cut(s)	2335
FblI	GTMKAC	1 cut(s)	1561
Fnu4HI	GCNGC	6 cut(s)	173, 696, 1410, 1450, 1502, 1705
FokI	GGATG	9 cut(s)	468, 472, 551, 575, 911, 1510, 1522, 1910, 2201
FriOI	GRGCYC	2 cut(s)	43, 828
Fsp4HI	GCNGC	6 cut(s)	173, 696, 1410, 1450, 1502, 1705
FspBI	CTAG	9 cut(s)	522, 810, 1023, 1230, 1341, 1413, 1701, 2054, 2126
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	6 cut(s)	173, 696, 1410, 1450, 1502, 1705
GsaI	CCCAGC	3 cut(s)	154, 2147, 2454
HaeIII	GGCC	7 cut(s)	728, 1840, 1915, 2030, 2142, 2253, 2578
HapII	CCGG	4 cut(s)	62, 341, 1081, 1397
HhaI	GCGC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	3 cut(s)	751, 1613, 2379
HindII	GTYRAC	3 cut(s)	751, 1613, 2379
HpaII	CCGG	4 cut(s)	62, 341, 1081, 1397
HphI	GGTGA	3 cut(s)	749, 1656, 1968
Hpy166II	GTNNAC	7 cut(s)	323, 751, 1562, 1613, 2021, 2200, 2379
Hpy8I	GTNNAC	7 cut(s)	323, 751, 1562, 1613, 2021, 2200, 2379
Hpy99I	CGWCG	1 cut(s)	1122
HpyCH4III	ACNGT	3 cut(s)	1321, 2223, 2619
HpyCH4IV	ACGT	4 cut(s)	988, 1117, 1359, 2084
HpyF10VI	GCNNNNNNNGC	6 cut(s)	58, 261, 704, 725, 1713, 2148
HpyF3I	CTNAG	8 cut(s)	48, 188, 230, 333, 447, 829, 893, 2573
HpySE526I	ACGT	4 cut(s)	988, 1117, 1359, 2084
HspAI	GCGC	1 cut(s)	175
KpnI	GGTACC	1 cut(s)	1237
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	2335
LguI	GCTCTTC	2 cut(s)	1776, 2229
LmnI	GCTCC	3 cut(s)	366, 709, 823
Lsp1109I	GCAGC	4 cut(s)	682, 1396, 1513, 1716
LweI	GCATC	9 cut(s)	135, 682, 694, 707, 1030, 1544, 1771, 2050, 2278
MaeI	CTAG	9 cut(s)	522, 810, 1023, 1230, 1341, 1413, 1701, 2054, 2126
MaeII	ACGT	4 cut(s)	988, 1117, 1359, 2084
MfeI	CAATTG	2 cut(s)	490, 1968
MflI	RGATCY	3 cut(s)	1226, 2177, 2456
MhlI	GDGCHC	5 cut(s)	43, 114, 363, 828, 2202
MlsI	TGGCCA	1 cut(s)	728
MluI	ACGCGT	1 cut(s)	1402
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	5 cut(s)	262, 1704, 1859, 1982, 2455
MmeI	TCCRAC	5 cut(s)	388, 459, 1032, 2205, 2536
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	2043
MroNI	GCCGGC	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	728
MseI	TTAA	3 cut(s)	26, 1647, 1925
MslI	CAYNNNNRTG	3 cut(s)	1169, 1349, 2301
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	3 cut(s)	1284, 2151, 2384
MspI	CCGG	4 cut(s)	62, 341, 1081, 1397
MspR9I	CCNGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
MunI	CAATTG	2 cut(s)	490, 1968
Mva1269I	GAATGC	3 cut(s)	1277, 2041, 2528
MvaI	CCWGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
MvnI	CGCG	1 cut(s)	1404
MwoI	GCNNNNNNNGC	6 cut(s)	58, 261, 704, 725, 1713, 2148
NaeI	GCCGGC	1 cut(s)	63
NdeI	CATATG	1 cut(s)	2214
NgoMIV	GCCGGC	1 cut(s)	61
NlaIV	GGNNCC	3 cut(s)	1235, 2254, 2592
NmeAIII	GCCGAG	2 cut(s)	137, 2245
NmuCI	GTSAC	9 cut(s)	1076, 1321, 1696, 1891, 1974, 1983, 2217, 2320, 2619
NsiI	ATGCAT	1 cut(s)	2043
NspV	TTCGAA	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	1540
PagI	TCATGA	2 cut(s)	1765, 2338
PasI	CCCWGGG	1 cut(s)	365
PceI	AGGCCT	2 cut(s)	1915, 2578
PciSI	GCTCTTC	2 cut(s)	1776, 2229
PctI	GAATGC	3 cut(s)	1277, 2041, 2528
PdiI	GCCGGC	1 cut(s)	63
PfeI	GAWTC	5 cut(s)	72, 286, 1189, 1466, 2513
PflMI	CCANNNNNTGG	1 cut(s)	2495
PinAI	ACCGGT	1 cut(s)	340
PkrI	GCNGC	6 cut(s)	174, 697, 1411, 1451, 1503, 1706
PleI	GAGTC	5 cut(s)	262, 1703, 1858, 1981, 2454
PpsI	GAGTC	5 cut(s)	262, 1703, 1858, 1981, 2454
Ppu21I	YACGTR	1 cut(s)	2085
PpuMI	RGGWCCY	1 cut(s)	2591
PshBI	ATTAAT	2 cut(s)	26, 1647
Psp124BI	GAGCTC	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	2591
Psp6I	CCWGG	7 cut(s)	89, 182, 289, 364, 1236, 1474, 2031
PspFI	CCCAGC	3 cut(s)	150, 2143, 2450
PspGI	CCWGG	7 cut(s)	89, 182, 289, 364, 1236, 1474, 2031
PspN4I	GGNNCC	3 cut(s)	1235, 2254, 2592
PspPI	GGNCC	7 cut(s)	1240, 1838, 2029, 2141, 2252, 2502, 2591
PspPPI	RGGWCCY	1 cut(s)	2591
PspXI	VCTCGAGB	1 cut(s)	1540
PstI	CTGCAG	1 cut(s)	1729
PstNI	CAGNNNCTG	1 cut(s)	229
PsuI	RGATCY	3 cut(s)	1226, 2177, 2456
PvuII	CAGCTG	1 cut(s)	2151
RsaI	GTAC	9 cut(s)	134, 679, 1235, 1255, 1590, 2020, 2083, 2539, 2616
RsaNI	GTAC	9 cut(s)	133, 678, 1234, 1254, 1589, 2019, 2082, 2538, 2615
RseI	CAYNNNNRTG	3 cut(s)	1169, 1349, 2301
SacI	GAGCTC	1 cut(s)	828
SapI	GCTCTTC	2 cut(s)	1776, 2229
SaqAI	TTAA	3 cut(s)	26, 1647, 1925
SatI	GCNGC	6 cut(s)	173, 696, 1410, 1450, 1502, 1705
Sau96I	GGNCC	7 cut(s)	1240, 1838, 2029, 2141, 2252, 2502, 2591
SchI	GAGTC	5 cut(s)	262, 1704, 1859, 1982, 2455
ScrFI	CCNGG	7 cut(s)	91, 184, 291, 366, 1238, 1476, 2033
SduI	GDGCHC	5 cut(s)	43, 114, 363, 828, 2202
SfaNI	GCATC	9 cut(s)	135, 682, 694, 707, 1030, 1544, 1771, 2050, 2278
SfcI	CTRYAG	3 cut(s)	507, 1317, 1725
Sfr274I	CTCGAG	1 cut(s)	1540
SfuI	TTCGAA	1 cut(s)	380
SinI	GGWCC	3 cut(s)	1240, 2502, 2591
SlaI	CTCGAG	1 cut(s)	1540
SmiMI	CAYNNNNRTG	3 cut(s)	1169, 1349, 2301
SmlI	CTYRAG	3 cut(s)	637, 1151, 1540
SmoI	CTYRAG	3 cut(s)	637, 1151, 1540
SseBI	AGGCCT	2 cut(s)	1915, 2578
SspMI	CTAG	9 cut(s)	522, 810, 1023, 1230, 1341, 1413, 1701, 2054, 2126
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	2 cut(s)	1915, 2578
StyD4I	CCNGG	7 cut(s)	89, 182, 289, 364, 1236, 1474, 2031
StyI	CCWWGG	3 cut(s)	8, 2284, 2345
TaaI	ACNGT	3 cut(s)	1321, 2223, 2619
TaiI	ACGT	4 cut(s)	991, 1120, 1362, 2087
TaqI	TCGA	5 cut(s)	70, 75, 380, 1541, 2516
TatI	WGTACW	4 cut(s)	677, 1588, 2018, 2614
TauI	GCSGC	2 cut(s)	175, 1452
TfiI	GAWTC	5 cut(s)	72, 286, 1189, 1466, 2513
Tru1I	TTAA	3 cut(s)	26, 1647, 1925
Tru9I	TTAA	3 cut(s)	26, 1647, 1925
TscAI	CASTG	4 cut(s)	505, 1215, 1326, 2226
TseFI	GTSAC	9 cut(s)	1076, 1321, 1696, 1891, 1974, 1983, 2217, 2320, 2619
TseI	GCWGC	4 cut(s)	695, 1409, 1501, 1704
Tsp45I	GTSAC	9 cut(s)	1076, 1321, 1696, 1891, 1974, 1983, 2217, 2320, 2619
TspDTI	ATGAA	7 cut(s)	1128, 1439, 1509, 1782, 1794, 2196, 2445
TspGWI	ACGGA	4 cut(s)	261, 1339, 1516, 1910
TspRI	CASTG	4 cut(s)	505, 1215, 1326, 2226
Van91I	CCANNNNNTGG	1 cut(s)	2495
VneI	GTGCAC	1 cut(s)	2198
VpaK11BI	GGWCC	3 cut(s)	1240, 2502, 2591
VspI	ATTAAT	2 cut(s)	26, 1647
XapI	RAATTY	2 cut(s)	375, 382
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1494, 2496
XhoI	CTCGAG	1 cut(s)	1540
XmiI	GTMKAC	1 cut(s)	1561
XspI	CTAG	9 cut(s)	522, 810, 1023, 1230, 1341, 1413, 1701, 2054, 2126
Zsp2I	ATGCAT	1 cut(s)	2043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.