Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005401

Physical Location & Seq

Genomic Coordinates Reverse (-)

26342755 .. 26347469

Gene Structure 4715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1172000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2664 bp

ATGTGTATACTTTGTGTGATTCAGAAGTGGTCTCGCCGGGTTGCTACGATGCTTCCTTGGTTAGTTATTCCATTAATAGGACTATGGGGTCTCTCTCAGCTTCTACCACCAGCTTTCCGATTTGAGATAACTTCGCCTAGACTCGCTTGTGTTGTTGTGCTCTTGGTTACTCTCTTCTGGTATGAGGTTTTGATGCCTCAGCTTTCGGCTTGGCGGGTGCGGAGGAATGCAATGCTTAGAGAGAAGAAAAGGTTTGAGGCAATAGAGTTGCAAAAGCTGAGGAAAACAGCAACGAGGCGGTGTCGAAACTGCAAGACTCCGTATAGGGATCAGAATCCCGGCGGTGGTCGGTTTATGTGTTCGTATTGTGGGCATATGTCAAAGAGACCAGTTTTAGACTTACCTGTGCCTGGGATGGGACTCTCGAATTCTGGGATCATCAAAGAGTTAGTTGAAAAGGTTGGAAGGATATTGACTGGAAAGGTGTGGTCTGAAAATGGGTGGTTGGACGGTCAAGATTCGTTGGAGAATGGAAATTGGGTCGGTGGTTCTATTACTGGGAAGTCTAGTTATTGCAGAAAGGACGGGAGCAGTGTTTTTGGAGGGGATGAGAGTTGTTTGGCAGAGAAGTCGTATACAGGTGTTGTTAATTTTGCTTGCAAGCTACTAACTTCGTTTTTCTTGAGCGTTAGATGGCTTTGGAGAAAGCTTTTTAGGATTAGTACATCAGGGGAGGATGATGCATCTGACACAGACCATAATGGATCGGCCAAAAGGGGCGAGAATGGGGCCAACTTGAATGAGAGTAGAGGAGAAAAGGCTCGCAGAAAAGCTGAAGAGAAGAGACAGGCTAGGATAGAGAAGGAGCTTTTGGAGGAGGAAGAAAGAAAGCAGAGGGAGGAAGTTGCAAGGTTGGTGGAGGAACGCAGGAGAATTAGGGATGAGAAAAAGGAAGCTGAACGTGGGAAATCATCACCACCTGCGAGGGAAAAAGATACTAAGAGAGAAGCAGAAAAGAAACGACAGGAAAGAAGGAAAGAGAAAGATAAGGGTTCTAGCAAGAGCAACTCTGATGCAGAAGAGCTGGAAAAGAGAGCAGGTAAGGAAAGTGAACGAAAGAGGGACTTTGACAATAAGAGTGATATTGACCGCCGCCAACTTCTGAAATCAGGGGCAGATTTTCTTAAGGGACAAAGCACAGAGACGGGGCATGGTATAAAAAATTCATATACAAACAATTTTATTCGGGGAAATGCTGGATCTAGGTACCTGGACCGCATGAGGGGTACAATTTTTAATTCTTCAAAGGCCTTTGGTGGAGGTAGTTTCTTTGGAAAGGGTGCTAATAGTACAGTGACAAAAGAAACCAAATCTAGCAGTTCTGTAGATCATGTCCATATTTATGCCCAGAAGAGAGACTTATGTCCACCTGAGCGCGCAGCTGCGAGACCTTTGATGAATGGAGATGATAAGAGTGTCCACTGCCCTGTTCACTCAGAACCACAGTCAGGGACTGCACCTAAAAAATCATGGCAGCAATTGTTTACTCGTTCATCGTCCGTGCCTTCATCAACAAGTGTAAATGTAATAAGTAGACCAAATGCAAAGTCTCAGACAGAAGTTCAAAGTCCTCAGTTATCTGGTCAGTCCTCGGCAATACAATCATTTGATAATCCAATCAACTTTGGGCTGCCATCACCATTCGCTTTATCTACTACCTATCCAAAAGTATCTACTACCAGCAGTTTAGGTTTTTCACCTGCAATTGATCCCGTACTTCCTCGCATTGGTGAAGGGCATCATGAACTTATACCTGAGGAGCCAGAGCTTTTTGAAGACCCATGTTACGTCCCTGATCCAGTATCCTTGCTTGGGCCAGTTTCTGAGTCACTTGATAATTTTCAATTGGACATGGGGACTGGTTTTGTGAAAGATATGGAATTGGAGAGGCCTCGCACATTGAAGAATGGACCTGCTTCTTCTGAAGTGAACAAGCCATCTCCAATTGAGTCACCAATGTCACGAGAAAAGCATAATAACTCTAGTCGCTTCCCTAGTACCCCAAAGGCCCAAGATATGCATGCTTCACCCCTGGATGATGCAAATGTCAAAGATAAGGGAACGTGGCAAATGTGGAACAGTTGTCCTCTTGGTCATGAAGGTCTAGGTTTTGCAGGTGGCTCTCCAAGCTGGTTTTTGCCTCCAGAACTGAATAGATCAAACAAGGATGATCTCACACACCCTTCATCAGTTTCACTATTTACTACAGAAGATCAGGTTGTTTCTGGCTCTCAATCTCCTAAGAATCAGAGCATTTTTCTTGGCAATGGCCAGGATGGCAGAACTTTTAGCCCTGTCACTGGTTCCAGTGATCATGATCCTTGGTTGCAGAAAGCCTTTTTTCCTCCATTGTCAACCGCTGAAAACCATTGTCCTCTCAGACCTCCGGGCGAAACTACAAAAAATGAACTGATTTTTGGGAGTCCCATCAGAGCTACTGGAAACCATCCATTTGAGCTGTCTCAAGAGAACGGGTTGTCAAACGGAAAGGAATGGGATGAATGTGCTGTGAAGGGAACGGGGGACGGTGTTGGAAAGCCATCTATGTTGAGGCCTCATAGCAGGGGTCTGTATCCCACCCCGAATGTACAGCCGCTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

888

Amino Acids

98.63

Weight (kDa)

9.09

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51640 AT3G51640 AT3G51640 AT3G51650 AT3G51650 AT3G51650 AT3G51650
fragaria_vesca	FvH4_6g10170 FvH4_6g10170 FvH4_6g10170
malus_domestica	MD04G1172000.v1.1 MD12G1185300.v1.1
prunus_persica	Prupe.6G290600_v2.0.a1 Prupe.6G290600_v2.0.a1
pyrus_communis	pycom04g15200 pycom12g17380
rosa_chinensis	RchiOBHm_Chr3g0460911
rosa_laevigata	RLG00000024966
rosa_multiflora	Rmu_sc0008258.1_g000012 Rmu_sc0021377.1_g000004
rosa_roxburghii	Rroxscaffold_6G00419040
rosa_rugosa	Rorug03G0047000 Rorug03G0047000 Rorug03G0047000
rosa_samantha	Rh3AG104400 Rh3BG108100 Rh3CG109800 Rh3DG109900
rosa_wichuraiana	Rw3G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	3 cut(s)	988, 1768, 2165
AasI	GACNNNNNNGTC	1 cut(s)	87
Acc36I	ACCTGC	5 cut(s)	988, 1088, 1768, 1981, 2165
Acc65I	GGTACC	1 cut(s)	1266
AccB1I	GGYRCC	1 cut(s)	1266
AccI	GTMKAC	3 cut(s)	7, 635, 1594
AccII	CGCG	1 cut(s)	1437
AciI	CCGC	9 cut(s)	214, 220, 298, 342, 1150, 1153, 1276, 2418, 2654
AclWI	GGATC	7 cut(s)	336, 443, 772, 1267, 1763, 1850, 2372
AcoI	YGGCCR	2 cut(s)	768, 2329
AcsI	RAATTY	2 cut(s)	427, 1222
AcuI	CTGAAG	2 cut(s)	855, 2004
AfaI	GTAC	7 cut(s)	724, 1268, 1288, 1351, 1776, 2059, 2649
AfiI	CCNNNNNNNGG	9 cut(s)	77, 344, 410, 416, 1282, 1508, 1787, 1872, 2360
AflII	CTTAAG	1 cut(s)	1184
AgsI	TTSAA	7 cut(s)	455, 799, 1305, 1625, 1835, 1904, 1963
AjnI	CCWGG	4 cut(s)	409, 1269, 2091, 2331
AjuI	GAANNNNNNNTTGG	4 cut(s)	854, 886, 2460, 2492
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	9 cut(s)	36, 95, 379, 838, 1196, 1410, 1441, 1614, 2526
AlwI	GGATC	7 cut(s)	336, 443, 772, 1267, 1763, 1850, 2372
AlwNI	CAGNNNCTG	2 cut(s)	1514, 1883
AoxI	GGCC	8 cut(s)	768, 789, 1308, 1874, 1949, 2067, 2329, 2612
ApeKI	GCWGC	4 cut(s)	1439, 1442, 1534, 1690
ApoI	RAATTY	2 cut(s)	427, 1222
ArsI	GACNNNNNNTTYG	2 cut(s)	1592, 1624
AseI	ATTAAT	1 cut(s)	74
Asp718I	GGTACC	1 cut(s)	1266
AspLEI	GCGC	2 cut(s)	1437, 1439
AspS9I	GGNCC	5 cut(s)	789, 1273, 1874, 1970, 2068
AsuC2I	CCSGG	3 cut(s)	38, 339, 2448
AsuHPI	GGTGA	6 cut(s)	966, 1689, 1749, 1802, 2004, 2079
AvaII	GGWCC	2 cut(s)	1273, 1970
AxyI	CCTNAGG	1 cut(s)	1815
BalI	TGGCCA	1 cut(s)	2331
BanI	GGYRCC	1 cut(s)	1266
BauI	CACGAG	1 cut(s)	2022
BbsI	GAAGAC	1 cut(s)	1842
Bbv12I	GWGCWC	1 cut(s)	162
BbvCI	CCTCAGC	2 cut(s)	198, 278
BbvI	GCAGC	4 cut(s)	1429, 1451, 1546, 1677
BccI	CCATC	8 cut(s)	409, 687, 1702, 2005, 2330, 2495, 2514, 2608
BcgI	CGANNNNNNTGC	2 cut(s)	612, 646
BciT130I	CCWGG	4 cut(s)	411, 1271, 2093, 2333
BciVI	GTATCC	2 cut(s)	1873, 2643
BclI	TGATCA	1 cut(s)	2371
BcnI	CCSGG	3 cut(s)	38, 339, 2448
BcoDI	GTCTC	9 cut(s)	36, 95, 379, 838, 1196, 1410, 1441, 1614, 2526
BfaI	CTAG	9 cut(s)	138, 567, 852, 1056, 1263, 1374, 2043, 2055, 2165
BfmI	CTRYAG	2 cut(s)	1383, 2265
BfrI	CTTAAG	1 cut(s)	1184
BfuAI	ACCTGC	5 cut(s)	988, 1088, 1768, 1981, 2165
BfuI	GTATCC	2 cut(s)	1873, 2643
BglI	GCCNNNNNGGC	1 cut(s)	2337
BisI	GCNGC	6 cut(s)	1153, 1440, 1443, 1535, 1691, 2654
BlsI	GCNGC	6 cut(s)	1154, 1441, 1444, 1536, 1692, 2655
Bme1390I	CCNGG	7 cut(s)	38, 339, 411, 1271, 2093, 2333, 2448
Bme18I	GGWCC	2 cut(s)	1273, 1970
BmgT120I	GGNCC	5 cut(s)	789, 1273, 1874, 1970, 2068
BmiI	GGNNCC	4 cut(s)	790, 1268, 1821, 2365
BmrFI	CCNGG	7 cut(s)	38, 339, 411, 1271, 2093, 2333, 2448
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	7 cut(s)	39, 183, 730, 752, 1063, 1807, 2089
BmuI	ACTGGG	1 cut(s)	567
BoxI	GACNNNNGTC	1 cut(s)	1422
BpiI	GAAGAC	1 cut(s)	1842
BpmI	CTGGAG	1 cut(s)	2187
Bpu10I	CCTNAGC	3 cut(s)	198, 278, 1431
BpuEI	CTTGAG	2 cut(s)	703, 2508
BpuMI	CCSGG	3 cut(s)	38, 339, 2448
BsaBI	GATNNNNATC	2 cut(s)	333, 2376
BsaI	GGTCTC	4 cut(s)	36, 95, 379, 1441
BsaJI	CCNNGG	5 cut(s)	56, 410, 1650, 2091, 2381
Bsc4I	CCNNNNNNNGG	9 cut(s)	77, 344, 410, 416, 1282, 1508, 1787, 1872, 2360
Bse1I	ACTGG	9 cut(s)	389, 481, 562, 1859, 1877, 1924, 2365, 2367, 2503
Bse21I	CCTNAGG	1 cut(s)	1815
Bse3DI	GCAATG	2 cut(s)	237, 2332
Bse8I	GATNNNNATC	2 cut(s)	333, 2376
BseBI	CCWGG	4 cut(s)	411, 1271, 2093, 2333
BseDI	CCNNGG	5 cut(s)	56, 410, 1650, 2091, 2381
BseGI	GGATG	9 cut(s)	420, 613, 742, 946, 2101, 2233, 2341, 2506, 2563
BseJI	GATNNNNATC	2 cut(s)	333, 2376
BseLI	CCNNNNNNNGG	9 cut(s)	77, 344, 410, 416, 1282, 1508, 1787, 1872, 2360
BseMI	GCAATG	2 cut(s)	237, 2332
BseNI	ACTGG	9 cut(s)	389, 481, 562, 1859, 1877, 1924, 2365, 2367, 2503
BsePI	GCGCGC	1 cut(s)	1435
BseRI	GAGGAG	3 cut(s)	825, 890, 1832
BseXI	GCAGC	4 cut(s)	1429, 1451, 1546, 1677
BsgI	GTGCAG	1 cut(s)	1500
Bsh1236I	CGCG	1 cut(s)	1437
BshFI	GGCC	8 cut(s)	770, 791, 1310, 1876, 1951, 2069, 2331, 2614
BshNI	GGYRCC	1 cut(s)	1266
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	37, 339, 2447
BslFI	GGGAC	8 cut(s)	432, 1136, 1203, 1525, 1835, 1930, 2469, 2597
BslI	CCNNNNNNNGG	9 cut(s)	77, 344, 410, 416, 1282, 1508, 1787, 1872, 2360
BsmAI	GTCTC	9 cut(s)	36, 95, 379, 838, 1196, 1410, 1441, 1614, 2526
BsmBI	CGTCTC	1 cut(s)	1196
BsmFI	GGGAC	8 cut(s)	432, 1136, 1203, 1525, 1835, 1930, 2469, 2597
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	8 cut(s)	770, 791, 1310, 1876, 1951, 2069, 2331, 2614
Bso31I	GGTCTC	4 cut(s)	36, 95, 379, 1441
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp1407I	TGTACA	1 cut(s)	2647
BspACI	CCGC	9 cut(s)	214, 220, 298, 342, 1150, 1153, 1276, 2418, 2654
BspANI	GGCC	8 cut(s)	770, 791, 1310, 1876, 1951, 2069, 2331, 2614
BspFNI	CGCG	1 cut(s)	1437
BspHI	TCATGA	3 cut(s)	1801, 2155, 2374
BspLI	GGNNCC	4 cut(s)	790, 1268, 1821, 2365
BspMI	ACCTGC	5 cut(s)	988, 1088, 1768, 1981, 2165
BspPI	GGATC	7 cut(s)	336, 443, 772, 1267, 1763, 1850, 2372
BspQI	GCTCTTC	1 cut(s)	1074
BspT107I	GGYRCC	1 cut(s)	1266
BspTI	CTTAAG	1 cut(s)	1184
BspTNI	GGTCTC	4 cut(s)	36, 95, 379, 1441
BsrDI	GCAATG	2 cut(s)	237, 2332
BsrGI	TGTACA	1 cut(s)	2647
BsrI	ACTGG	9 cut(s)	389, 481, 562, 1859, 1877, 1924, 2365, 2367, 2503
BssECI	CCNNGG	5 cut(s)	56, 410, 1650, 2091, 2381
BssHII	GCGCGC	1 cut(s)	1435
BssNAI	GTATAC	2 cut(s)	8, 636
BssSI	CACGAG	1 cut(s)	2022
BssT1I	CCWWGG	2 cut(s)	56, 2381
Bst1107I	GTATAC	2 cut(s)	8, 636
Bst2BI	CACGAG	1 cut(s)	2022
Bst2UI	CCWGG	4 cut(s)	411, 1271, 2093, 2333
Bst4CI	ACNGT	5 cut(s)	512, 1354, 1506, 2141, 2588
Bst6I	CTCTTC	5 cut(s)	179, 831, 836, 1074, 1406
BstAFI	CTTAAG	1 cut(s)	1184
BstAUI	TGTACA	1 cut(s)	2647
BstC8I	GCNNGC	5 cut(s)	658, 662, 823, 1437, 2082
BstF5I	GGATG	9 cut(s)	420, 613, 742, 946, 2101, 2233, 2341, 2506, 2563
BstFNI	CGCG	1 cut(s)	1437
BstHHI	GCGC	2 cut(s)	1437, 1439
BstMAI	GTCTC	9 cut(s)	36, 95, 379, 838, 1196, 1410, 1441, 1614, 2526
BstMWI	GCNNNNNNNGC	2 cut(s)	2187, 2337
BstNI	CCWGG	4 cut(s)	411, 1271, 2093, 2333
BstNSI	RCATGY	1 cut(s)	2084
BstPAI	GACNNNNGTC	1 cut(s)	1422
BstSCI	CCNGG	7 cut(s)	36, 337, 409, 1269, 2091, 2331, 2446
BstSFI	CTRYAG	2 cut(s)	1383, 2265
BstUI	CGCG	1 cut(s)	1437
BstV1I	GCAGC	4 cut(s)	1429, 1451, 1546, 1677
BstV2I	GAAGAC	1 cut(s)	1842
BstX2I	RGATCY	1 cut(s)	1259
BstYI	RGATCY	1 cut(s)	1259
BstZ17I	GTATAC	2 cut(s)	8, 636
Bsu36I	CCTNAGG	1 cut(s)	1815
BsuI	GTATCC	2 cut(s)	1873, 2643
BsuRI	GGCC	8 cut(s)	770, 791, 1310, 1876, 1951, 2069, 2331, 2614
BtsCI	GGATG	9 cut(s)	420, 613, 742, 946, 2101, 2233, 2341, 2506, 2563
BtsI	GCAGTG	2 cut(s)	598, 1480
BtsIMutI	CAGTG	5 cut(s)	598, 1359, 1480, 2358, 2374
BveI	ACCTGC	5 cut(s)	988, 1088, 1768, 1981, 2165
Cac8I	GCNNGC	5 cut(s)	658, 662, 823, 1437, 2082
CaiI	CAGNNNCTG	2 cut(s)	1514, 1883
CciI	TCATGA	3 cut(s)	1801, 2155, 2374
CfoI	GCGC	2 cut(s)	1437, 1439
Cfr13I	GGNCC	5 cut(s)	789, 1273, 1874, 1970, 2068
Csp6I	GTAC	7 cut(s)	723, 1267, 1287, 1350, 1775, 2058, 2648
CspCI	CAANNNNNGTGG	2 cut(s)	897, 932
CviQI	GTAC	7 cut(s)	723, 1267, 1287, 1350, 1775, 2058, 2648
DrdI	GACNNNNNNGTC	1 cut(s)	87
DseDI	GACNNNNNNGTC	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	768, 2329
Eam1104I	CTCTTC	5 cut(s)	179, 831, 836, 1074, 1406
EarI	CTCTTC	5 cut(s)	179, 831, 836, 1074, 1406
Eco130I	CCWWGG	2 cut(s)	56, 2381
Eco147I	AGGCCT	3 cut(s)	1310, 1951, 2614
Eco31I	GGTCTC	4 cut(s)	36, 95, 379, 1441
Eco47I	GGWCC	2 cut(s)	1273, 1970
Eco57I	CTGAAG	2 cut(s)	855, 2004
Eco81I	CCTNAGG	1 cut(s)	1815
EcoRI	GAATTC	1 cut(s)	427
EcoRII	CCWGG	4 cut(s)	409, 1269, 2091, 2331
EcoT14I	CCWWGG	2 cut(s)	56, 2381
EcoT22I	ATGCAT	2 cut(s)	745, 2082
ErhI	CCWWGG	2 cut(s)	56, 2381
Esp3I	CGTCTC	1 cut(s)	1196
FalI	AAGNNNNNCTT	4 cut(s)	1109, 1141, 1403, 1435
FaqI	GGGAC	8 cut(s)	432, 1136, 1203, 1525, 1835, 1930, 2469, 2597
FauI	CCCGC	1 cut(s)	207
FauNDI	CATATG	1 cut(s)	375
FbaI	TGATCA	1 cut(s)	2371
FblI	GTMKAC	3 cut(s)	7, 635, 1594
Fnu4HI	GCNGC	6 cut(s)	1153, 1440, 1443, 1535, 1691, 2654
FokI	GGATG	9 cut(s)	427, 620, 749, 953, 2108, 2240, 2348, 2493, 2570
Fsp4HI	GCNGC	6 cut(s)	1153, 1440, 1443, 1535, 1691, 2654
FspBI	CTAG	9 cut(s)	138, 567, 852, 1056, 1263, 1374, 2043, 2055, 2165
GlaI	GCGC	2 cut(s)	1436, 1438
GluI	GCNGC	6 cut(s)	1153, 1440, 1443, 1535, 1691, 2654
GsuI	CTGGAG	1 cut(s)	2187
HaeIII	GGCC	8 cut(s)	770, 791, 1310, 1876, 1951, 2069, 2331, 2614
HapII	CCGG	3 cut(s)	37, 339, 2447
HhaI	GCGC	2 cut(s)	1437, 1439
Hin6I	GCGC	2 cut(s)	1435, 1437
HinP1I	GCGC	2 cut(s)	1435, 1437
HincII	GTYRAC	1 cut(s)	2415
HindII	GTYRAC	1 cut(s)	2415
HindIII	AAGCTT	1 cut(s)	707
HpaII	CCGG	3 cut(s)	37, 339, 2447
HphI	GGTGA	6 cut(s)	966, 1689, 1749, 1802, 2004, 2079
Hpy188III	TCNNGA	9 cut(s)	424, 515, 682, 1802, 2022, 2156, 2204, 2375, 2525
HpyAV	CCTTC	8 cut(s)	459, 856, 1026, 1575, 1787, 2153, 2253, 2566
HpyCH4III	ACNGT	5 cut(s)	512, 1354, 1506, 2141, 2588
HpyCH4IV	ACGT	3 cut(s)	961, 1848, 2123
HpyF10VI	GCNNNNNNNGC	2 cut(s)	2187, 2337
HpySE526I	ACGT	3 cut(s)	961, 1848, 2123
HspAI	GCGC	2 cut(s)	1435, 1437
KpnI	GGTACC	1 cut(s)	1270
Ksp22I	TGATCA	1 cut(s)	2371
LguI	GCTCTTC	1 cut(s)	1074
LmnI	GCTCC	3 cut(s)	588, 865, 1819
Lsp1109I	GCAGC	4 cut(s)	1429, 1451, 1546, 1677
LweI	GCATC	7 cut(s)	39, 183, 730, 752, 1063, 1807, 2089
MaeI	CTAG	9 cut(s)	138, 567, 852, 1056, 1263, 1374, 2043, 2055, 2165
MaeII	ACGT	3 cut(s)	961, 1848, 2123
MaeIII	GTNAC	7 cut(s)	166, 1354, 1844, 1887, 2010, 2019, 2356
MfeI	CAATTG	4 cut(s)	1538, 1764, 1904, 2004
MflI	RGATCY	1 cut(s)	1259
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	2331
MluNI	TGGCCA	1 cut(s)	2331
MlyI	GAGTC	6 cut(s)	135, 310, 414, 1895, 2018, 2491
MmeI	TCCRAC	4 cut(s)	442, 486, 504, 2572
Mox20I	TGGCCA	1 cut(s)	2331
Mph1103I	ATGCAT	2 cut(s)	745, 2082
MscI	TGGCCA	1 cut(s)	2331
MseI	TTAA	4 cut(s)	74, 648, 1185, 1296
MslI	CAYNNNNRTG	1 cut(s)	1401
Msp20I	TGGCCA	1 cut(s)	2331
MspA1I	CMGCKG	2 cut(s)	1442, 2420
MspCI	CTTAAG	1 cut(s)	1184
MspI	CCGG	3 cut(s)	37, 339, 2447
MspR9I	CCNGG	7 cut(s)	38, 339, 411, 1271, 2093, 2333, 2448
MunI	CAATTG	4 cut(s)	1538, 1764, 1904, 2004
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	4 cut(s)	411, 1271, 2093, 2333
MvnI	CGCG	1 cut(s)	1437
MwoI	GCNNNNNNNGC	2 cut(s)	2187, 2337
NciI	CCSGG	3 cut(s)	38, 339, 2448
NdeI	CATATG	1 cut(s)	375
NlaIV	GGNNCC	4 cut(s)	790, 1268, 1821, 2365
NmeAIII	GCCGAG	1 cut(s)	1631
NmuCI	GTSAC	5 cut(s)	1354, 1887, 2010, 2019, 2356
NsiI	ATGCAT	2 cut(s)	745, 2082
NspI	RCATGY	1 cut(s)	2084
PaeI	GCATGC	1 cut(s)	2084
PagI	TCATGA	3 cut(s)	1801, 2155, 2374
PaqCI	CACCTGC	3 cut(s)	988, 1768, 2165
PauI	GCGCGC	1 cut(s)	1435
PceI	AGGCCT	3 cut(s)	1310, 1951, 2614
PciSI	GCTCTTC	1 cut(s)	1074
PctI	GAATGC	1 cut(s)	232
PfeI	GAWTC	4 cut(s)	19, 334, 518, 2305
PkrI	GCNGC	6 cut(s)	1154, 1441, 1444, 1536, 1692, 2655
PleI	GAGTC	6 cut(s)	135, 310, 414, 1894, 2017, 2490
PpsI	GAGTC	6 cut(s)	135, 310, 414, 1894, 2017, 2490
PshAI	GACNNNNGTC	1 cut(s)	1422
PshBI	ATTAAT	1 cut(s)	74
Psp6I	CCWGG	4 cut(s)	409, 1269, 2091, 2331
PspGI	CCWGG	4 cut(s)	409, 1269, 2091, 2331
PspN4I	GGNNCC	4 cut(s)	790, 1268, 1821, 2365
PspPI	GGNCC	5 cut(s)	789, 1273, 1874, 1970, 2068
PstNI	CAGNNNCTG	2 cut(s)	1514, 1883
PsuI	RGATCY	1 cut(s)	1259
PteI	GCGCGC	1 cut(s)	1435
PvuII	CAGCTG	1 cut(s)	1442
RsaI	GTAC	7 cut(s)	724, 1268, 1288, 1351, 1776, 2059, 2649
RsaNI	GTAC	7 cut(s)	723, 1267, 1287, 1350, 1775, 2058, 2648
RseI	CAYNNNNRTG	1 cut(s)	1401
SapI	GCTCTTC	1 cut(s)	1074
SaqAI	TTAA	4 cut(s)	74, 648, 1185, 1296
SatI	GCNGC	6 cut(s)	1153, 1440, 1443, 1535, 1691, 2654
Sau96I	GGNCC	5 cut(s)	789, 1273, 1874, 1970, 2068
SchI	GAGTC	6 cut(s)	135, 310, 414, 1895, 2018, 2491
ScrFI	CCNGG	7 cut(s)	38, 339, 411, 1271, 2093, 2333, 2448
SduI	GDGCHC	1 cut(s)	162
SfaNI	GCATC	7 cut(s)	39, 183, 730, 752, 1063, 1807, 2089
SfcI	CTRYAG	2 cut(s)	1383, 2265
SinI	GGWCC	2 cut(s)	1273, 1970
SmiMI	CAYNNNNRTG	1 cut(s)	1401
SmlI	CTYRAG	3 cut(s)	682, 1184, 2523
SmoI	CTYRAG	3 cut(s)	682, 1184, 2523
SphI	GCATGC	1 cut(s)	2084
SseBI	AGGCCT	3 cut(s)	1310, 1951, 2614
SsiI	CCGC	9 cut(s)	214, 220, 298, 342, 1150, 1153, 1276, 2418, 2654
SspMI	CTAG	9 cut(s)	138, 567, 852, 1056, 1263, 1374, 2043, 2055, 2165
StuI	AGGCCT	3 cut(s)	1310, 1951, 2614
StyD4I	CCNGG	7 cut(s)	36, 337, 409, 1269, 2091, 2331, 2446
StyI	CCWWGG	2 cut(s)	56, 2381
TaaI	ACNGT	5 cut(s)	512, 1354, 1506, 2141, 2588
TaiI	ACGT	3 cut(s)	964, 1851, 2126
TaqI	TCGA	2 cut(s)	304, 425
TatI	WGTACW	3 cut(s)	722, 1349, 2647
TauI	GCSGC	2 cut(s)	1155, 2656
TfiI	GAWTC	4 cut(s)	19, 334, 518, 2305
Tru1I	TTAA	4 cut(s)	74, 648, 1185, 1296
Tru9I	TTAA	4 cut(s)	74, 648, 1185, 1296
TscAI	CASTG	5 cut(s)	598, 1359, 1487, 2365, 2374
TseFI	GTSAC	5 cut(s)	1354, 1887, 2010, 2019, 2356
TseI	GCWGC	4 cut(s)	1439, 1442, 1534, 1690
Tsp45I	GTSAC	5 cut(s)	1354, 1887, 2010, 2019, 2356
TspDTI	ATGAA	9 cut(s)	1215, 1472, 1542, 1557, 1818, 2172, 2235, 2481, 2574
TspGWI	ACGGA	3 cut(s)	309, 1549, 2559
TspRI	CASTG	5 cut(s)	598, 1359, 1487, 2365, 2374
Vha464I	CTTAAG	1 cut(s)	1184
VpaK11BI	GGWCC	2 cut(s)	1273, 1970
VspI	ATTAAT	1 cut(s)	74
XapI	RAATTY	2 cut(s)	427, 1222
XceI	RCATGY	1 cut(s)	2084
XmiI	GTMKAC	3 cut(s)	7, 635, 1594
XspI	CTAG	9 cut(s)	138, 567, 852, 1056, 1263, 1374, 2043, 2055, 2165
Zsp2I	ATGCAT	2 cut(s)	745, 2082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.