Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8360001.1

Orthogroup ID

OG0023131

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1023

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8360001.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

gttattcctgatacaatatctggattggagaagctacaagagcttaacttgtcttccaatctgttggagtcactgcccgacaccattggcctgctgcaaaatttgaaggttctgaatgtctccagcaacaagctggctgctcttcctgactctatctctcattgcaggtcattggtggagttggatgtgagtttcaacaacctcacatacttgccaaccaacattggttatgagttggtcaatcttcagaagctttccatgcaattaaacaaaatccgttcccttcccacctctgtttgtgagctgaggtctctgcgctccttggatgcacacttcaatgagcttcggggccttccactggcttttggccgattggccaatctccaaagtctgaaccttgccagcaactttactgaccttactgagctgcccgatacttttggtgatctaaccaacctcaaggaacttgatctcagcaacaatcagattcatgctctgccagatacatttggccgccttgacaatttgaccaaacttaacttggacggaaaccctcttgtgcttccaccccctgacctagttcaacaaggtgttgacgcagtcaagctctttatggccaagaggtggttggagatactggtggaagaagaaaggaagagcatgcttcaagtacaagaagaagcagaaactggatggttgacacgcagcacttcctggttgacacgcagcctttcaggtgtttctggatatctgtctccaagatctccaagagaccctgttcttgatcagcagctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

265

Amino Acids

29.51

Weight (kDa)

4.9

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023131)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8360001.1_g000001 Rmu_sc0011290.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217450
rosa_samantha	Rh6BG006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	624
AciI	CCGC	1 cut(s)	514
AcoI	YGGCCR	4 cut(s)	367, 375, 511, 615
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	672
AfiI	CCNNNNNNNGG	2 cut(s)	358, 624
AgsI	TTSAA	5 cut(s)	106, 196, 337, 584, 668
AjnI	CCWGG	1 cut(s)	713
AluBI	AGCT	9 cut(s)	34, 43, 133, 253, 304, 343, 427, 607, 793
AluI	AGCT	9 cut(s)	34, 43, 133, 253, 304, 343, 427, 607, 793
Alw26I	GTCTC	4 cut(s)	124, 315, 759, 765
AlwNI	CAGNNNCTG	1 cut(s)	689
AoxI	GGCC	6 cut(s)	88, 349, 367, 375, 511, 615
ApeKI	GCWGC	6 cut(s)	94, 137, 427, 705, 726, 790
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	349
AsuHPI	GGTGA	1 cut(s)	455
BalI	TGGCCA	2 cut(s)	377, 617
BbsI	GAAGAC	1 cut(s)	45
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	5 cut(s)	81, 124, 414, 717, 738
BccI	CCATC	1 cut(s)	687
BciT130I	CCWGG	1 cut(s)	715
BclI	TGATCA	1 cut(s)	784
BcoDI	GTCTC	4 cut(s)	124, 315, 759, 765
BfaI	CTAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	761
BisI	GCNGC	7 cut(s)	95, 138, 428, 514, 706, 727, 791
BlsI	GCNGC	7 cut(s)	96, 139, 429, 515, 707, 728, 792
Bme1390I	CCNGG	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	715
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	106
Bpu10I	CCTNAGC	1 cut(s)	305
BpuEI	CTTGAG	1 cut(s)	443
BsaI	GGTCTC	2 cut(s)	315, 765
BsaJI	CCNNGG	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 624
Bse1I	ACTGG	3 cut(s)	363, 642, 694
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	715
BseDI	CCNNGG	1 cut(s)	321
BseGI	GGATG	3 cut(s)	190, 331, 698
BseLI	CCNNNNNNNGG	2 cut(s)	358, 624
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	3 cut(s)	296, 414, 487
BseNI	ACTGG	3 cut(s)	363, 642, 694
BseXI	GCAGC	5 cut(s)	81, 124, 414, 717, 738
BshFI	GGCC	6 cut(s)	90, 351, 369, 377, 513, 617
BslI	CCNNNNNNNGG	2 cut(s)	358, 624
BsmAI	GTCTC	4 cut(s)	124, 315, 759, 765
BsnI	GGCC	6 cut(s)	90, 351, 369, 377, 513, 617
Bso31I	GGTCTC	2 cut(s)	315, 765
Bsp143I	GATC	4 cut(s)	445, 469, 761, 784
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	6 cut(s)	90, 351, 369, 377, 513, 617
BspCNI	CTCAG	3 cut(s)	297, 415, 486
BspLI	GGNNCC	1 cut(s)	350
BspMI	ACCTGC	1 cut(s)	156
BspQI	GCTCTTC	2 cut(s)	147, 650
BspTNI	GGTCTC	2 cut(s)	315, 765
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	363, 642, 694
BssECI	CCNNGG	1 cut(s)	321
BssMI	GATC	4 cut(s)	445, 469, 761, 784
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	715
Bst6I	CTCTTC	2 cut(s)	147, 650
BstC8I	GCNNGC	4 cut(s)	92, 135, 403, 662
BstDEI	CTNAG	3 cut(s)	305, 423, 473
BstF5I	GGATG	3 cut(s)	190, 331, 698
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	4 cut(s)	448, 472, 764, 787
BstMAI	GTCTC	4 cut(s)	124, 315, 759, 765
BstMBI	GATC	4 cut(s)	445, 469, 761, 784
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 259
BstNI	CCWGG	1 cut(s)	715
BstNSI	RCATGY	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	713
BstV1I	GCAGC	5 cut(s)	81, 124, 414, 717, 738
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	761
BstXI	CCANNNNNNTGG	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	761
BsuRI	GGCC	6 cut(s)	90, 351, 369, 377, 513, 617
BtsCI	GGATG	3 cut(s)	190, 331, 698
BtsI	GCAGTG	1 cut(s)	71
BtsIMutI	CAGTG	2 cut(s)	71, 356
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	4 cut(s)	92, 135, 403, 662
CaiI	CAGNNNCTG	1 cut(s)	689
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	605
Csp6I	GTAC	1 cut(s)	671
CviAII	CATG	3 cut(s)	259, 491, 661
CviQI	GTAC	1 cut(s)	671
DdeI	CTNAG	3 cut(s)	305, 423, 473
DpnI	GATC	4 cut(s)	447, 471, 763, 786
DpnII	GATC	4 cut(s)	445, 469, 761, 784
EaeI	YGGCCR	4 cut(s)	367, 375, 511, 615
Eam1104I	CTCTTC	2 cut(s)	147, 650
EarI	CTCTTC	2 cut(s)	147, 650
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	315, 765
Eco32I	GATATC	1 cut(s)	749
Eco57I	CTGAAG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	1 cut(s)	713
EcoRV	GATATC	1 cut(s)	749
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	262, 494, 664
FaiI	YATR	7 cut(s)	208, 231, 260, 492, 614, 662, 796
FatI	CATG	3 cut(s)	258, 490, 660
FbaI	TGATCA	1 cut(s)	784
Fnu4HI	GCNGC	7 cut(s)	95, 138, 428, 514, 706, 727, 791
FokI	GGATG	3 cut(s)	197, 338, 705
Fsp4HI	GCNGC	7 cut(s)	95, 138, 428, 514, 706, 727, 791
FspBI	CTAG	1 cut(s)	578
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	7 cut(s)	95, 138, 428, 514, 706, 727, 791
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	6 cut(s)	90, 351, 369, 377, 513, 617
HgaI	GACGC	1 cut(s)	605
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	3 cut(s)	262, 494, 664
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HincII	GTYRAC	3 cut(s)	595, 699, 720
HindII	GTYRAC	3 cut(s)	595, 699, 720
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	3 cut(s)	68, 149, 487
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	595, 699, 720
Hpy188I	TCNGA	4 cut(s)	114, 249, 393, 486
Hpy188III	TCNNGA	5 cut(s)	8, 21, 146, 744, 782
Hpy8I	GTNNAC	3 cut(s)	595, 699, 720
HpyAV	CCTTC	3 cut(s)	100, 293, 362
HpyCH4V	TGCA	4 cut(s)	97, 165, 262, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 259
HpyF3I	CTNAG	3 cut(s)	305, 423, 473
Hsp92II	CATG	3 cut(s)	262, 494, 664
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	445, 469, 761, 784
LguI	GCTCTTC	2 cut(s)	147, 650
LmnI	GCTCC	1 cut(s)	323
Lsp1109I	GCAGC	5 cut(s)	81, 124, 414, 717, 738
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	578
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	4 cut(s)	447, 471, 763, 786
MboI	GATC	4 cut(s)	445, 469, 761, 784
MboII	GAAGA	7 cut(s)	45, 134, 236, 656, 659, 667, 689
MflI	RGATCY	1 cut(s)	761
MlsI	TGGCCA	2 cut(s)	377, 617
MluCI	AATT	3 cut(s)	100, 263, 523
MluNI	TGGCCA	2 cut(s)	377, 617
MlyI	GAGTC	2 cut(s)	77, 143
MmeI	TCCRAC	3 cut(s)	45, 162, 609
MnlI	CCTC	6 cut(s)	212, 300, 301, 467, 564, 615
Mox20I	TGGCCA	2 cut(s)	377, 617
MscI	TGGCCA	2 cut(s)	377, 617
MseI	TTAA	3 cut(s)	45, 266, 537
MslI	CAYNNNNRTG	1 cut(s)	336
Msp20I	TGGCCA	2 cut(s)	377, 617
MspR9I	CCNGG	1 cut(s)	715
MvaI	CCWGG	1 cut(s)	715
MwoI	GCNNNNNNNGC	2 cut(s)	40, 259
NdeII	GATC	4 cut(s)	445, 469, 761, 784
NlaIII	CATG	3 cut(s)	262, 494, 664
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	69
NspI	RCATGY	1 cut(s)	664
PaeI	GCATGC	1 cut(s)	664
PciSI	GCTCTTC	2 cut(s)	147, 650
PfeI	GAWTC	1 cut(s)	487
PflFI	GACNNNGTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	624
PkrI	GCNGC	7 cut(s)	96, 139, 429, 515, 707, 728, 792
PleI	GAGTC	2 cut(s)	76, 143
PpsI	GAGTC	2 cut(s)	76, 143
Psp6I	CCWGG	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	713
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	761
PsyI	GACNNNGTC	1 cut(s)	599
RsaI	GTAC	1 cut(s)	672
RsaNI	GTAC	1 cut(s)	671
RseI	CAYNNNNRTG	1 cut(s)	336
SapI	GCTCTTC	2 cut(s)	147, 650
SaqAI	TTAA	3 cut(s)	45, 266, 537
SatI	GCNGC	7 cut(s)	95, 138, 428, 514, 706, 727, 791
Sau3AI	GATC	4 cut(s)	445, 469, 761, 784
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	77, 143
ScrFI	CCNGG	1 cut(s)	715
SfaNI	GCATC	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	664
Sse9I	AATT	3 cut(s)	100, 263, 523
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	713
StyI	CCWWGG	1 cut(s)	321
TasI	AATT	3 cut(s)	100, 263, 523
TatI	WGTACW	1 cut(s)	670
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	3 cut(s)	45, 266, 537
Tru9I	TTAA	3 cut(s)	45, 266, 537
TscAI	CASTG	2 cut(s)	78, 363
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	6 cut(s)	94, 137, 427, 705, 726, 790
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	479
TspGWI	ACGGA	2 cut(s)	266, 561
TspRI	CASTG	2 cut(s)	78, 363
Tth111I	GACNNNGTC	1 cut(s)	599
Van91I	CCANNNNNTGG	1 cut(s)	624
XapI	RAATTY	1 cut(s)	100
XceI	RCATGY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	3 cut(s)	130, 538, 625
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.