Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0023131

Physical Location & Seq

Genomic Coordinates Forward (+)

67928994 .. 67931191

Gene Structure 2198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGCTCCAGAAAGAGGGGATTGTATATAGATTATGAATCAAGAAGCATTTTTCAACAGGTTATTCCTGATACAATATCTGGATTGGAGAAGCTACAAGAGCTTAACTTGTCTTCCAATCTGTTGGAGTCACTGCCCGACACCATTGGCCTGCTGCAAAATTTGAAGGTTTTGAATGTCTCTGGCAACAAGCTGGCTGCTCTTCCTGACTCTATCTGTCATTGCAGGTCATTGGTGGAGTTGGATGTGAGTTTCAACAACCTCACATACTTGCCAACCAACATTGGTTATGAGTTGGTCAATCTTCAGAAGCTTTCCATGCAATTAAACAAAATCCGTTCCCTTCCCACCTCTGTTTGTGAGCTGAGGTCTCTGCGCTCCTTGGATGCTCACTTCAATGAGCTTCGGGGCCTTCCACTGGCTTTTGGCCGATTGGCCAATCTCCAAAGTCTGAACCTTGCCAGCAACTTTACTGACCTTACTGAGCTGCCTGATACTTTTGGTGATCTAACCAACCTCAAGGAACTTGATCTCAGCAACAATCAGATTCATGCTCTGCCAGATACATTTGGCCGCCTTGACAATTTGACCAAACTTAACTTGGACGGAAACTCTCTTGTGCTTCCACCCCCTGACATAGTTCAACAAGGTGTTGACGCAGTCAAGCTCTTTATGGCCAAGAGGTGGTTGGAGATACTGGTGGAAGAAGAAAGGAAGAGCATGCTTCAAGTACAAGAAGAAGCAGAAACTGGATGGTTGACACGCAGCACTTCCTGGTTGACACGCAGCCTTTCAGGTGTTTCTGGATATCTGTCTCCAAGATCTCCAAGAGACCCTATTCTTGATCAGCAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

285

Amino Acids

31.95

Weight (kDa)

5.12

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	18 - 65	8e-08	Leucine rich repeat
LRR_14	PF23598	25 - 84	1.3e-07	Leucine-rich repeat region
LRR_8	PF13855	31 - 88	1.3e-09	Leucine rich repeat
LRR_8	PF13855	76 - 135	7.7e-08	Leucine rich repeat
LRR_14	PF23598	88 - 154	1.9e-07	Leucine-rich repeat region
LRR_14	PF23598	143 - 206	7.7e-08	Leucine-rich repeat region
LRR_8	PF13855	147 - 206	3.1e-11	Leucine rich repeat
LRR_4	PF12799	171 - 205	4e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0023131)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8360001.1_g000001 Rmu_sc0011290.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217450
rosa_samantha	Rh6BG006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	684
AciI	CCGC	1 cut(s)	574
AcoI	YGGCCR	4 cut(s)	427, 435, 571, 675
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	732
AfiI	CCNNNNNNNGG	3 cut(s)	15, 418, 684
AgsI	TTSAA	7 cut(s)	56, 166, 175, 256, 397, 644, 728
AjnI	CCWGG	1 cut(s)	773
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	4 cut(s)	184, 375, 819, 825
AlwNI	CAGNNNCTG	1 cut(s)	749
AoxI	GGCC	6 cut(s)	148, 409, 427, 435, 571, 675
ApeKI	GCWGC	6 cut(s)	154, 197, 487, 765, 786, 850
ApoI	RAATTY	1 cut(s)	160
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	515
BalI	TGGCCA	2 cut(s)	437, 677
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	365
BbvI	GCAGC	5 cut(s)	141, 184, 474, 777, 798
BccI	CCATC	1 cut(s)	747
BciT130I	CCWGG	1 cut(s)	775
BclI	TGATCA	1 cut(s)	844
BcoDI	GTCTC	4 cut(s)	184, 375, 819, 825
BfuAI	ACCTGC	1 cut(s)	216
BglII	AGATCT	1 cut(s)	821
BisI	GCNGC	7 cut(s)	155, 198, 488, 574, 766, 787, 851
BlsI	GCNGC	7 cut(s)	156, 199, 489, 575, 767, 788, 852
Bme1390I	CCNGG	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	409
BmiI	GGNNCC	1 cut(s)	410
BmrFI	CCNGG	1 cut(s)	775
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	2 cut(s)	375, 825
BsaJI	CCNNGG	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 418, 684
Bse1I	ACTGG	3 cut(s)	423, 702, 754
Bse3DI	GCAATG	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	775
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	3 cut(s)	250, 391, 758
BseLI	CCNNNNNNNGG	3 cut(s)	15, 418, 684
BseMI	GCAATG	1 cut(s)	220
BseMII	CTCAG	3 cut(s)	356, 474, 547
BseNI	ACTGG	3 cut(s)	423, 702, 754
BseXI	GCAGC	5 cut(s)	141, 184, 474, 777, 798
BshFI	GGCC	6 cut(s)	150, 411, 429, 437, 573, 677
BsiHKAI	GWGCWC	1 cut(s)	8
BslI	CCNNNNNNNGG	3 cut(s)	15, 418, 684
BsmAI	GTCTC	4 cut(s)	184, 375, 819, 825
BsnI	GGCC	6 cut(s)	150, 411, 429, 437, 573, 677
Bso31I	GGTCTC	2 cut(s)	375, 825
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	505, 529, 821, 844
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	6 cut(s)	150, 411, 429, 437, 573, 677
BspCNI	CTCAG	3 cut(s)	357, 475, 546
BspLI	GGNNCC	1 cut(s)	410
BspMI	ACCTGC	1 cut(s)	216
BspQI	GCTCTTC	2 cut(s)	207, 710
BspTNI	GGTCTC	2 cut(s)	375, 825
BsrDI	GCAATG	1 cut(s)	220
BsrI	ACTGG	3 cut(s)	423, 702, 754
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	505, 529, 821, 844
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	775
Bst6I	CTCTTC	2 cut(s)	207, 710
BstC8I	GCNNGC	4 cut(s)	152, 195, 463, 722
BstDEI	CTNAG	3 cut(s)	365, 483, 533
BstF5I	GGATG	3 cut(s)	250, 391, 758
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	4 cut(s)	508, 532, 824, 847
BstMAI	GTCTC	4 cut(s)	184, 375, 819, 825
BstMBI	GATC	4 cut(s)	505, 529, 821, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 319
BstNI	CCWGG	1 cut(s)	775
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	773
BstV1I	GCAGC	5 cut(s)	141, 184, 474, 777, 798
BstV2I	GAAGAC	1 cut(s)	105
BstX2I	RGATCY	1 cut(s)	821
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	821
BsuRI	GGCC	6 cut(s)	150, 411, 429, 437, 573, 677
BtsCI	GGATG	3 cut(s)	250, 391, 758
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 416
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	4 cut(s)	152, 195, 463, 722
CaiI	CAGNNNCTG	1 cut(s)	749
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	409
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	731
CviAII	CATG	3 cut(s)	319, 551, 721
CviQI	GTAC	1 cut(s)	731
DdeI	CTNAG	3 cut(s)	365, 483, 533
DpnI	GATC	4 cut(s)	507, 531, 823, 846
DpnII	GATC	4 cut(s)	505, 529, 821, 844
EaeI	YGGCCR	4 cut(s)	427, 435, 571, 675
Eam1104I	CTCTTC	2 cut(s)	207, 710
EarI	CTCTTC	2 cut(s)	207, 710
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	2 cut(s)	375, 825
Eco32I	GATATC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	290
EcoICRI	GAGCTC	1 cut(s)	6
EcoO109I	RGGNCCY	1 cut(s)	409
EcoRII	CCWGG	1 cut(s)	773
EcoRV	GATATC	1 cut(s)	809
EcoT14I	CCWWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	381
FaeI	CATG	3 cut(s)	322, 554, 724
FatI	CATG	3 cut(s)	318, 550, 720
FbaI	TGATCA	1 cut(s)	844
Fnu4HI	GCNGC	7 cut(s)	155, 198, 488, 574, 766, 787, 851
FokI	GGATG	3 cut(s)	257, 398, 765
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	7 cut(s)	155, 198, 488, 574, 766, 787, 851
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	7 cut(s)	155, 198, 488, 574, 766, 787, 851
HaeIII	GGCC	6 cut(s)	150, 411, 429, 437, 573, 677
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	322, 554, 724
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	3 cut(s)	655, 759, 780
HindII	GTYRAC	3 cut(s)	655, 759, 780
HindIII	AAGCTT	1 cut(s)	311
HinfI	GANTC	4 cut(s)	38, 128, 209, 547
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	3 cut(s)	655, 759, 780
Hpy188I	TCNGA	3 cut(s)	309, 453, 546
Hpy188III	TCNNGA	7 cut(s)	9, 42, 68, 81, 206, 804, 842
Hpy8I	GTNNAC	3 cut(s)	655, 759, 780
HpyAV	CCTTC	3 cut(s)	160, 353, 422
HpyCH4V	TGCA	3 cut(s)	157, 225, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 319
HpyF3I	CTNAG	3 cut(s)	365, 483, 533
Hsp92II	CATG	3 cut(s)	322, 554, 724
HspAI	GCGC	1 cut(s)	376
Ksp22I	TGATCA	1 cut(s)	844
Kzo9I	GATC	4 cut(s)	505, 529, 821, 844
LguI	GCTCTTC	2 cut(s)	207, 710
LmnI	GCTCC	2 cut(s)	11, 383
Lsp1109I	GCAGC	5 cut(s)	141, 184, 474, 777, 798
LweI	GCATC	1 cut(s)	376
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	4 cut(s)	507, 531, 823, 846
MboI	GATC	4 cut(s)	505, 529, 821, 844
MboII	GAAGA	7 cut(s)	105, 194, 296, 716, 719, 727, 749
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	1 cut(s)	8
MlsI	TGGCCA	2 cut(s)	437, 677
MluCI	AATT	3 cut(s)	160, 323, 583
MluNI	TGGCCA	2 cut(s)	437, 677
MlyI	GAGTC	2 cut(s)	137, 203
MmeI	TCCRAC	3 cut(s)	105, 222, 669
MnlI	CCTC	6 cut(s)	9, 272, 360, 361, 527, 675
Mox20I	TGGCCA	2 cut(s)	437, 677
MscI	TGGCCA	2 cut(s)	437, 677
MseI	TTAA	3 cut(s)	105, 326, 597
MslI	CAYNNNNRTG	1 cut(s)	396
Msp20I	TGGCCA	2 cut(s)	437, 677
MspR9I	CCNGG	1 cut(s)	775
MvaI	CCWGG	1 cut(s)	775
MwoI	GCNNNNNNNGC	2 cut(s)	100, 319
NdeII	GATC	4 cut(s)	505, 529, 821, 844
NlaIII	CATG	3 cut(s)	322, 554, 724
NlaIV	GGNNCC	1 cut(s)	410
NmuCI	GTSAC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	724
PaeI	GCATGC	1 cut(s)	724
PciSI	GCTCTTC	2 cut(s)	207, 710
PfeI	GAWTC	2 cut(s)	38, 547
PflFI	GACNNNGTC	1 cut(s)	659
PflMI	CCANNNNNTGG	1 cut(s)	684
PkrI	GCNGC	7 cut(s)	156, 199, 489, 575, 767, 788, 852
PleI	GAGTC	2 cut(s)	136, 203
PpsI	GAGTC	2 cut(s)	136, 203
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	773
PspN4I	GGNNCC	1 cut(s)	410
PspPI	GGNCC	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	821
PsyI	GACNNNGTC	1 cut(s)	659
RsaI	GTAC	1 cut(s)	732
RsaNI	GTAC	1 cut(s)	731
RseI	CAYNNNNRTG	1 cut(s)	396
SacI	GAGCTC	1 cut(s)	8
SapI	GCTCTTC	2 cut(s)	207, 710
SaqAI	TTAA	3 cut(s)	105, 326, 597
SatI	GCNGC	7 cut(s)	155, 198, 488, 574, 766, 787, 851
Sau3AI	GATC	4 cut(s)	505, 529, 821, 844
Sau96I	GGNCC	1 cut(s)	409
SchI	GAGTC	2 cut(s)	137, 203
ScrFI	CCNGG	1 cut(s)	775
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SphI	GCATGC	1 cut(s)	724
Sse9I	AATT	3 cut(s)	160, 323, 583
SsiI	CCGC	1 cut(s)	574
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	773
StyI	CCWWGG	1 cut(s)	381
TasI	AATT	3 cut(s)	160, 323, 583
TatI	WGTACW	1 cut(s)	730
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	38, 547
Tru1I	TTAA	3 cut(s)	105, 326, 597
Tru9I	TTAA	3 cut(s)	105, 326, 597
TscAI	CASTG	2 cut(s)	138, 423
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	6 cut(s)	154, 197, 487, 765, 786, 850
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	51, 539
TspGWI	ACGGA	2 cut(s)	326, 621
TspRI	CASTG	2 cut(s)	138, 423
Tth111I	GACNNNGTC	1 cut(s)	659
Van91I	CCANNNNNTGG	1 cut(s)	684
XapI	RAATTY	1 cut(s)	160
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	2 cut(s)	598, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.