Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0023131

Physical Location & Seq

Genomic Coordinates Forward (+)

937507 .. 938046

Gene Structure 540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG006000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCAATTAAACAAAATCCGTTCCCTTCCCACCTCTGTTTGTGAGCTGAGGTCTCTGCGCTCCTTGGATGCTCACTTCAATGAGCTTAGGGGCCTTCCACTGGCTTTTGGCCGATTGGCCAATCTCCAAAGTCTGAACCTTGCCAGCAACTTTACTGACCTTACTGAGCTGCCCGATACTTTTGGTGATCTAACCAACCTCAAGGAACTTGATCTCAGCAACAATCAGATTCATGCTCTGCCAGATACATTTGGCCGCCTTGACAATTTGACCAAACTTAACTTGGACGGAAACCCTCTTGTGCTTCCACCCCCTGACGTAGTTCAACAAGGTGTTGATGCAGTCAAGCTCTTTATGGCCAAGAGGTGGTTGGAGATACTGGTGGAAGAAGAAAGGAAGAGCATGCTTCAAGTACAAGAAGAAGCAGAAACTGGATGGTTGACACGCAGCACTTCCTGGTTGACACGCAGCCTTTCAGGTGTTTCTGGATATCTGTCTCCAAGATCTCCAAGAGACCCTATTCTTGATCAGCAGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

5.07

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	37 - 98	5.4e-08	Leucine-rich repeat region
LRR_8	PF13855	58 - 100	2.4e-11	Leucine rich repeat
LRR_4	PF12799	65 - 100	9e-08	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023131)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8360001.1_g000001 Rmu_sc0011290.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217450
rosa_samantha	Rh6BG006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	366
AciI	CCGC	1 cut(s)	256
AcoI	YGGCCR	4 cut(s)	109, 117, 253, 357
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	2 cut(s)	100, 366
AgsI	TTSAA	3 cut(s)	79, 326, 410
AjnI	CCWGG	1 cut(s)	455
AluBI	AGCT	5 cut(s)	46, 85, 169, 349, 535
AluI	AGCT	5 cut(s)	46, 85, 169, 349, 535
Alw26I	GTCTC	3 cut(s)	57, 501, 507
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	5 cut(s)	91, 109, 117, 253, 357
ApeKI	GCWGC	4 cut(s)	169, 447, 468, 532
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	197
BalI	TGGCCA	2 cut(s)	119, 359
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	156, 459, 480
BccI	CCATC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	457
BclI	TGATCA	1 cut(s)	526
BcoDI	GTCTC	3 cut(s)	57, 501, 507
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	5 cut(s)	170, 256, 448, 469, 533
BlsI	GCNGC	5 cut(s)	171, 257, 449, 470, 534
Bme1390I	CCNGG	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	1 cut(s)	457
BmsI	GCATC	2 cut(s)	58, 328
Bpu10I	CCTNAGC	2 cut(s)	47, 86
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	2 cut(s)	57, 507
BsaJI	CCNNGG	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 366
Bse1I	ACTGG	3 cut(s)	105, 384, 436
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	2 cut(s)	73, 440
BseLI	CCNNNNNNNGG	2 cut(s)	100, 366
BseMII	CTCAG	3 cut(s)	38, 156, 229
BseNI	ACTGG	3 cut(s)	105, 384, 436
BseXI	GCAGC	3 cut(s)	156, 459, 480
BshFI	GGCC	5 cut(s)	93, 111, 119, 255, 359
BslI	CCNNNNNNNGG	2 cut(s)	100, 366
BsmAI	GTCTC	3 cut(s)	57, 501, 507
BsnI	GGCC	5 cut(s)	93, 111, 119, 255, 359
Bso31I	GGTCTC	2 cut(s)	57, 507
Bsp143I	GATC	4 cut(s)	187, 211, 503, 526
BspACI	CCGC	1 cut(s)	256
BspANI	GGCC	5 cut(s)	93, 111, 119, 255, 359
BspCNI	CTCAG	3 cut(s)	39, 157, 228
BspLI	GGNNCC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	392
BspTNI	GGTCTC	2 cut(s)	57, 507
BsrI	ACTGG	3 cut(s)	105, 384, 436
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	4 cut(s)	187, 211, 503, 526
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	457
Bst6I	CTCTTC	1 cut(s)	392
BstC8I	GCNNGC	2 cut(s)	145, 404
BstDEI	CTNAG	4 cut(s)	47, 86, 165, 215
BstF5I	GGATG	2 cut(s)	73, 440
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	4 cut(s)	190, 214, 506, 529
BstMAI	GTCTC	3 cut(s)	57, 501, 507
BstMBI	GATC	4 cut(s)	187, 211, 503, 526
BstNI	CCWGG	1 cut(s)	457
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	455
BstV1I	GCAGC	3 cut(s)	156, 459, 480
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	5 cut(s)	93, 111, 119, 255, 359
BtsCI	GGATG	2 cut(s)	73, 440
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	2 cut(s)	145, 404
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	2 cut(s)	233, 403
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	4 cut(s)	47, 86, 165, 215
DpnI	GATC	4 cut(s)	189, 213, 505, 528
DpnII	GATC	4 cut(s)	187, 211, 503, 526
EaeI	YGGCCR	4 cut(s)	109, 117, 253, 357
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	2 cut(s)	57, 507
Eco32I	GATATC	1 cut(s)	491
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	455
EcoRV	GATATC	1 cut(s)	491
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	236, 406
FaiI	YATR	4 cut(s)	234, 356, 404, 538
FatI	CATG	2 cut(s)	232, 402
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	5 cut(s)	170, 256, 448, 469, 533
FokI	GGATG	2 cut(s)	80, 447
Fsp4HI	GCNGC	5 cut(s)	170, 256, 448, 469, 533
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	5 cut(s)	170, 256, 448, 469, 533
HaeIII	GGCC	5 cut(s)	93, 111, 119, 255, 359
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	236, 406
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	2 cut(s)	441, 462
HindII	GTYRAC	2 cut(s)	441, 462
HinfI	GANTC	1 cut(s)	229
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	2 cut(s)	441, 462
Hpy188I	TCNGA	2 cut(s)	135, 228
Hpy188III	TCNNGA	2 cut(s)	486, 524
Hpy8I	GTNNAC	2 cut(s)	441, 462
HpyAV	CCTTC	2 cut(s)	35, 104
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	4, 341
HpyF3I	CTNAG	4 cut(s)	47, 86, 165, 215
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	236, 406
HspAI	GCGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	4 cut(s)	187, 211, 503, 526
LguI	GCTCTTC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	65
Lsp1109I	GCAGC	3 cut(s)	156, 459, 480
LweI	GCATC	2 cut(s)	58, 328
MaeII	ACGT	1 cut(s)	318
MalI	GATC	4 cut(s)	189, 213, 505, 528
MboI	GATC	4 cut(s)	187, 211, 503, 526
MboII	GAAGA	4 cut(s)	398, 401, 409, 431
MflI	RGATCY	1 cut(s)	503
MlsI	TGGCCA	2 cut(s)	119, 359
MluCI	AATT	2 cut(s)	5, 265
MluNI	TGGCCA	2 cut(s)	119, 359
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	42, 43, 209, 306, 357
Mox20I	TGGCCA	2 cut(s)	119, 359
MscI	TGGCCA	2 cut(s)	119, 359
MseI	TTAA	2 cut(s)	8, 279
MslI	CAYNNNNRTG	1 cut(s)	78
Msp20I	TGGCCA	2 cut(s)	119, 359
MspR9I	CCNGG	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	457
NdeII	GATC	4 cut(s)	187, 211, 503, 526
NlaIII	CATG	2 cut(s)	236, 406
NlaIV	GGNNCC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	392
PfeI	GAWTC	1 cut(s)	229
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	5 cut(s)	171, 257, 449, 470, 534
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	78
SapI	GCTCTTC	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	8, 279
SatI	GCNGC	5 cut(s)	170, 256, 448, 469, 533
Sau3AI	GATC	4 cut(s)	187, 211, 503, 526
Sau96I	GGNCC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	58, 328
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	2 cut(s)	5, 265
SsiI	CCGC	1 cut(s)	256
StyD4I	CCNGG	1 cut(s)	455
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	1 cut(s)	321
TasI	AATT	2 cut(s)	5, 265
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	8, 279
Tru9I	TTAA	2 cut(s)	8, 279
TscAI	CASTG	1 cut(s)	105
TseI	GCWGC	4 cut(s)	169, 447, 468, 532
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	2 cut(s)	8, 303
TspRI	CASTG	1 cut(s)	105
Van91I	CCANNNNNTGG	1 cut(s)	366
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.