Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011290.1

Orthogroup ID

OG0023131

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 540

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011290.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

gtgcagttgaacaaaatccgttcctttcctacctctatttgtgagttgaggtctttgctgtctttggatgctcacttcaatgagctacgtggtcttccactagcttttggccgattgactagtctccaaagtatcaaccttgccagtaattttactgatctcactgagctcccggatacttttggtgatctaaccaatctcaaggaacttgatctcagcaacaatcaggttcatgctcttccagatacatttagccgccttgaaaatctggttaaacttaacctggatggaaaccctcttgtggttccgcctcctgatgtagttcaacaaggtgttgaagccatcaaggtctttatgagcaataggtggttagagttactggcggaagaagaaaagaagagcatgcttcaagtacaagaacaagaagaagcaggatggttgacacgcggcacttcttgggtgaagggttatgtttcaggtgtttctgaatatctatccccaagagctcccgaagaccctattcttaatcagcagctatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

179

Amino Acids

20.07

Weight (kDa)

4.7

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023131)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8360001.1_g000001 Rmu_sc0011290.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217450
rosa_samantha	Rh6BG006000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AciI	CCGC	4 cut(s)	256, 308, 383, 447
AcoI	YGGCCR	1 cut(s)	109
AfaI	GTAC	1 cut(s)	414
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	6 cut(s)	10, 79, 263, 326, 338, 410
AhlI	ACTAGT	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	5 cut(s)	85, 104, 169, 506, 535
AluI	AGCT	5 cut(s)	85, 104, 169, 506, 535
Alw21I	GWGCWC	2 cut(s)	171, 508
Alw26I	GTCTC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	197, 472
BanII	GRGCYC	2 cut(s)	171, 508
BbsI	GAAGAC	2 cut(s)	86, 519
Bbv12I	GWGCWC	2 cut(s)	171, 508
BccI	CCATC	3 cut(s)	281, 350, 429
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	119
BfaI	CTAG	2 cut(s)	101, 120
BfuI	GTATCC	1 cut(s)	169
BisI	GCNGC	3 cut(s)	256, 448, 533
BlsI	GCNGC	3 cut(s)	257, 449, 534
Bme1390I	CCNGG	2 cut(s)	173, 284
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	173, 284
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	2 cut(s)	86, 519
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	173
BsaAI	YACGTR	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	144, 384
BseBI	CCWGG	1 cut(s)	284
BseGI	GGATG	3 cut(s)	73, 292, 440
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMII	CTCAG	2 cut(s)	156, 229
BseNI	ACTGG	2 cut(s)	144, 384
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	111
BsiHKAI	GWGCWC	2 cut(s)	171, 508
BsiSI	CCGG	1 cut(s)	173
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	111
Bsp1286I	GDGCHC	2 cut(s)	171, 508
Bsp143I	GATC	3 cut(s)	157, 187, 211
BspACI	CCGC	4 cut(s)	256, 308, 383, 447
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	157, 228
BspFNI	CGCG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	306
BspQI	GCTCTTC	2 cut(s)	243, 392
BsrI	ACTGG	2 cut(s)	144, 384
BssMI	GATC	3 cut(s)	157, 187, 211
Bst2UI	CCWGG	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	243, 392
BstBAI	YACGTR	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	165, 215
BstF5I	GGATG	3 cut(s)	73, 292, 440
BstFNI	CGCG	1 cut(s)	447
BstKTI	GATC	3 cut(s)	160, 190, 214
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	157, 187, 211
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	2 cut(s)	171, 282
BstUI	CGCG	1 cut(s)	447
BstV2I	GAAGAC	2 cut(s)	86, 519
BsuI	GTATCC	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	3 cut(s)	73, 292, 440
BtsIMutI	CAGTG	1 cut(s)	162
Cac8I	GCNNGC	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	413
CviAII	CATG	2 cut(s)	233, 403
CviJI	RGCY	8 cut(s)	85, 104, 111, 169, 255, 341, 506, 535
CviKI_1	RGCY	8 cut(s)	85, 104, 111, 169, 255, 341, 506, 535
CviQI	GTAC	1 cut(s)	413
DdeI	CTNAG	2 cut(s)	165, 215
DpnI	GATC	3 cut(s)	159, 189, 213
DpnII	GATC	3 cut(s)	157, 187, 211
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	243, 392
EarI	CTCTTC	2 cut(s)	243, 392
EciI	GGCGGA	2 cut(s)	297, 398
Ecl136II	GAGCTC	2 cut(s)	169, 506
Eco24I	GRGCYC	2 cut(s)	171, 508
Eco53kI	GAGCTC	2 cut(s)	169, 506
EcoICRI	GAGCTC	2 cut(s)	169, 506
EcoRII	CCWGG	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	171, 508
FaeI	CATG	2 cut(s)	236, 406
FaiI	YATR	5 cut(s)	234, 356, 404, 471, 538
FatI	CATG	2 cut(s)	232, 402
Fnu4HI	GCNGC	3 cut(s)	256, 448, 533
FokI	GGATG	3 cut(s)	80, 299, 447
FriOI	GRGCYC	2 cut(s)	171, 508
Fsp4HI	GCNGC	3 cut(s)	256, 448, 533
FspBI	CTAG	2 cut(s)	101, 120
GluI	GCNGC	3 cut(s)	256, 448, 533
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	2 cut(s)	236, 406
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	197, 472
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	3 cut(s)	242, 314, 509
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	1 cut(s)	457
HpyCH4IV	ACGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	165, 215
HpySE526I	ACGT	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	236, 406
Kzo9I	GATC	3 cut(s)	157, 187, 211
LguI	GCTCTTC	2 cut(s)	243, 392
LmnI	GCTCC	2 cut(s)	174, 511
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	101, 120
MaeII	ACGT	1 cut(s)	88
MaeIII	GTNAC	1 cut(s)	375
MalI	GATC	3 cut(s)	159, 189, 213
MboI	GATC	3 cut(s)	157, 187, 211
MboII	GAAGA	7 cut(s)	86, 230, 398, 401, 409, 437, 524
MhlI	GDGCHC	2 cut(s)	171, 508
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	4 cut(s)	42, 43, 306, 321
MseI	TTAA	3 cut(s)	273, 279, 525
MslI	CAYNNNNRTG	1 cut(s)	78
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	173, 284
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	447
NciI	CCSGG	1 cut(s)	173
NdeII	GATC	3 cut(s)	157, 187, 211
NlaIII	CATG	2 cut(s)	236, 406
NlaIV	GGNNCC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	406
PciSI	GCTCTTC	2 cut(s)	243, 392
PfoI	TCCNGGA	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	257, 449, 534
Ppu21I	YACGTR	1 cut(s)	89
Psp124BI	GAGCTC	2 cut(s)	171, 508
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	306
RsaI	GTAC	1 cut(s)	414
RsaNI	GTAC	1 cut(s)	413
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	2 cut(s)	171, 508
SapI	GCTCTTC	2 cut(s)	243, 392
SaqAI	TTAA	3 cut(s)	273, 279, 525
SatI	GCNGC	3 cut(s)	256, 448, 533
Sau3AI	GATC	3 cut(s)	157, 187, 211
ScrFI	CCNGG	2 cut(s)	173, 284
SduI	GDGCHC	2 cut(s)	171, 508
SfaNI	GCATC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
SpeI	ACTAGT	1 cut(s)	119
SphI	GCATGC	1 cut(s)	406
Sse9I	AATT	1 cut(s)	148
SsiI	CCGC	4 cut(s)	256, 308, 383, 447
SspMI	CTAG	2 cut(s)	101, 120
SstI	GAGCTC	2 cut(s)	171, 508
StyD4I	CCNGG	2 cut(s)	171, 282
TaiI	ACGT	1 cut(s)	91
TasI	AATT	1 cut(s)	148
TatI	WGTACW	1 cut(s)	412
TauI	GCSGC	2 cut(s)	258, 450
Tru1I	TTAA	3 cut(s)	273, 279, 525
Tru9I	TTAA	3 cut(s)	273, 279, 525
TscAI	CASTG	1 cut(s)	169
TseI	GCWGC	1 cut(s)	532
TspDTI	ATGAA	1 cut(s)	221
TspGWI	ACGGA	1 cut(s)	8
TspRI	CASTG	1 cut(s)	169
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	2 cut(s)	101, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.