Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8366655.1

Orthogroup ID

OG0008666

Physical Location & Seq

Genomic Coordinates Reverse (-)

6 .. 1028

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8366655.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgccccaaaactttgtgcagaatgtggaagccttgtcaaggctaaggcataggcatttggtcagtgttcttggacactgcactgtcacttatcaggaccctccaaatacagccatcactgtattcattgttttcgaaaacatctcaaacgggtcattgagagaccatctcactgattggagaaagaaagactggctcaaatggccacagagaatggctgttactattggtattgcaagaggagttcagttcttgcacacgggagtagcaccgggcgtctttggaaataatttgaagatggacaacatattgttggatgagagtgtttctgcaaaaatcagcaactataaccttccatttcagattggttcagagagtcctaaaccgagcgctgaagccgagaaggaagatatttaccagctgggtgttattctgctccaagttcttactggcaaattggtcaaatcaacaagtgaagtgaatgagctaaagcttgagctcgagaaaggcttaacagaagggcaatcgagactacgacttgcaatagacccctctatccagggcagttttgcataccagtcactgaagacggcggtcgaaatcaccatcaattgtctgtgcagagatccaagcaagcgtccttcaatagataatgttctctggaacttgcagtatgcaattcaggttcaggagggatggaccagcagtggcaaccttagtgcacaaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

243

Amino Acids

27.14

Weight (kDa)

6.97

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14390 AT2G02780 AT2G02780 AT2G02780
fragaria_vesca	FvH4_4g31730 FvH4_4g31730
malus_domestica	MD13G1077200.v1.1 MD16G1077300.v1.1
prunus_persica	Prupe.1G269800_v2.0.a1
pyrus_communis	pycom13g06730 pycom16g06660
rosa_chinensis	RchiOBHm_Chr4g0440331
rosa_laevigata	RLG00000006191
rosa_multiflora	Rmu_co8366655.1_g000001 Rmu_co8382523.1_g000001 Rmu_sc0001685.1_g000042
rosa_roxburghii	Rroxscaffold_5G00381210
rosa_rugosa	Rorug04G0325700
rosa_samantha	Rh4AG376600 Rh4BG389600 Rh4CG404400 Rh4DG383300
rosa_wichuraiana	Rw4G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	620
AcoI	YGGCCR	1 cut(s)	203
AcuI	CTGAAG	2 cut(s)	414, 605
AcyI	GRCGYC	1 cut(s)	276
AfeI	AGCGCT	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	295, 645
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	4 cut(s)	421, 487, 493, 499
AluI	AGCT	4 cut(s)	421, 487, 493, 499
Alw21I	GWGCWC	2 cut(s)	501, 724
Alw26I	GTCTC	2 cut(s)	156, 523
Alw44I	GTGCAC	1 cut(s)	720
AlwI	GGATC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	500
Aor51HI	AGCGCT	1 cut(s)	391
AoxI	GGCC	1 cut(s)	203
ApaLI	GTGCAC	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	97, 699
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	595
AsuII	TTCGAA	1 cut(s)	135
AvaI	CYCGRG	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	97, 699
BaeGI	GKGCMC	1 cut(s)	724
BalI	TGGCCA	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	501, 724
BccI	CCATC	5 cut(s)	122, 174, 292, 614, 690
BceAI	ACGGC	1 cut(s)	606
BciT130I	CCWGG	1 cut(s)	560
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	156, 523
BfoI	RGCGCY	1 cut(s)	393
Bme1390I	CCNGG	2 cut(s)	273, 560
Bme18I	GGWCC	2 cut(s)	97, 699
BmeT110I	CYCGRG	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	97, 699
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	273, 560
BoxI	GACNNNNGTC	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	593
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bpu10I	CCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	515
BpuMI	CCSGG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	559
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	3 cut(s)	197, 454, 577
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	559
BseGI	GGATG	2 cut(s)	322, 701
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	197, 454, 577
BseRI	GAGGAG	1 cut(s)	255
BseSI	GKGCMC	1 cut(s)	724
BseYI	CCCAGC	1 cut(s)	421
BsgI	GTGCAG	3 cut(s)	38, 64, 640
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	501, 724
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	156, 523
BsnI	GGCC	1 cut(s)	205
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	135
Bsp1286I	GDGCHC	2 cut(s)	501, 724
Bsp143I	GATC	1 cut(s)	625
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	620
BspT104I	TTCGAA	1 cut(s)	135
BspTNI	GGTCTC	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	197, 454, 577
BssECI	CCNNGG	1 cut(s)	559
BssMI	GATC	1 cut(s)	625
BssNI	GRCGYC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	2 cut(s)	85, 121
BstACI	GRCGYC	1 cut(s)	276
BstBI	TTCGAA	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	2 cut(s)	44, 716
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	322, 701
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	392
BstKTI	GATC	1 cut(s)	628
BstMAI	GTCTC	2 cut(s)	156, 523
BstMBI	GATC	1 cut(s)	625
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstNI	CCWGG	1 cut(s)	560
BstPAI	GACNNNNGTC	1 cut(s)	593
BstSCI	CCNGG	2 cut(s)	271, 558
BstSLI	GKGCMC	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	593
BstX2I	RGATCY	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	625
BsuRI	GGCC	1 cut(s)	205
BtsCI	GGATG	2 cut(s)	322, 701
BtsI	GCAGTG	2 cut(s)	76, 712
BtsIMutI	CAGTG	7 cut(s)	70, 76, 81, 117, 171, 581, 712
Cac8I	GCNNGC	1 cut(s)	635
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	97, 699
CseI	GACGC	2 cut(s)	265, 626
DdeI	CTNAG	2 cut(s)	44, 716
DpnI	GATC	1 cut(s)	627
DpnII	GATC	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	203
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	501
Eco31I	GGTCTC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	97, 699
Eco47III	AGCGCT	1 cut(s)	391
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	414, 605
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	499
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	501
FaiI	YATR	5 cut(s)	51, 308, 348, 574, 675
FokI	GGATG	2 cut(s)	329, 708
FriOI	GRGCYC	1 cut(s)	501
GlaI	GCGC	1 cut(s)	391
GsaI	CCCAGC	1 cut(s)	425
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	205
HapII	CCGG	1 cut(s)	272
HgaI	GACGC	2 cut(s)	265, 626
HhaI	GCGC	1 cut(s)	392
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	390
HinP1I	GCGC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	1 cut(s)	376
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	1 cut(s)	722
Hpy188I	TCNGA	2 cut(s)	363, 373
Hpy188III	TCNNGA	5 cut(s)	95, 502, 528, 661, 689
Hpy8I	GTNNAC	1 cut(s)	722
HpyAV	CCTTC	4 cut(s)	362, 397, 512, 651
HpyCH4III	ACNGT	2 cut(s)	85, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	44, 716
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	625
LmnI	GCTCC	1 cut(s)	441
MaeIII	GTNAC	3 cut(s)	85, 220, 579
MalI	GATC	1 cut(s)	627
MboI	GATC	1 cut(s)	625
MboII	GAAGA	3 cut(s)	307, 419, 598
MfeI	CAATTG	1 cut(s)	610
MflI	RGATCY	1 cut(s)	625
MhlI	GDGCHC	2 cut(s)	501, 724
MlsI	TGGCCA	1 cut(s)	205
MluCI	AATT	4 cut(s)	289, 455, 610, 678
MluNI	TGGCCA	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	4 cut(s)	111, 233, 562, 685
Mox20I	TGGCCA	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	205
MseI	TTAA	1 cut(s)	512
Msp20I	TGGCCA	1 cut(s)	205
MspA1I	CMGCKG	1 cut(s)	421
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	2 cut(s)	273, 560
MunI	CAATTG	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	560
MwoI	GCNNNNNNNGC	1 cut(s)	202
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	625
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	2 cut(s)	85, 579
NspV	TTCGAA	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	500
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PpuMI	RGGWCCY	1 cut(s)	97
PshAI	GACNNNNGTC	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	1 cut(s)	558
PspFI	CCCAGC	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	97, 699
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	625
PvuII	CAGCTG	1 cut(s)	421
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	1 cut(s)	512
Sau3AI	GATC	1 cut(s)	625
Sau96I	GGNCC	2 cut(s)	97, 699
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	2 cut(s)	273, 560
SduI	GDGCHC	2 cut(s)	501, 724
SetI	ASST	7 cut(s)	354, 423, 489, 495, 501, 687, 717
Sfr274I	CTCGAG	1 cut(s)	500
SfuI	TTCGAA	1 cut(s)	135
SinI	GGWCC	2 cut(s)	97, 699
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	494, 500
SmoI	CTYRAG	2 cut(s)	494, 500
Sse9I	AATT	4 cut(s)	289, 455, 610, 678
SsiI	CCGC	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	271, 558
TaaI	ACNGT	2 cut(s)	85, 121
TaqI	TCGA	4 cut(s)	135, 501, 527, 597
TasI	AATT	4 cut(s)	289, 455, 610, 678
Tru1I	TTAA	1 cut(s)	512
Tru9I	TTAA	1 cut(s)	512
TscAI	CASTG	7 cut(s)	70, 83, 88, 124, 178, 588, 712
TseFI	GTSAC	2 cut(s)	85, 579
Tsp45I	GTSAC	2 cut(s)	85, 579
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	7 cut(s)	70, 83, 88, 124, 178, 588, 712
VneI	GTGCAC	1 cut(s)	720
VpaK11BI	GGWCC	2 cut(s)	97, 699
XagI	CCTNNNNNAGG	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.