Rorug04G0325700

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005350
Physical Location & Seq
Forward (+)
50067067 .. 50069128
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0325700.1

Sequence Viewer

Length: 288 bp
ATGGGGTTTATAATGGAGTTTGCTGAGAATCTGGTGCTGAGGCTAATGGAGGACCCTAAGGAGCGAGATAGGAAATTTAGGGAGCACGTGTATGCGGTGAAGGATCGATGTGAGAAGACAAAAGAGATGTGGGCCTTACCTCTCCGGCCTTATGGGTTTTGGACATTTGACCGCCACAATTCGCAGATGAAATGGGACGCCCAGATTAGTCAGGTTGAAGGCAGGAGGGACCCCTATGATGACCTTCTCCAGCACAGCCGCGACACTGACATTGGCAAATCTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

95

Amino Acids

11.57

Weight (kDa)

6.83

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NDUFB11 PF17250 1 - 85 2.9e-52 NADH-ubiquinone oxidoreductase 11 kDa subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 11
AccII CGCG 1 cut(s) 261
AciI CCGC 3 cut(s) 95, 172, 259
AclWI GGATC 1 cut(s) 111
AcsI RAATTY 1 cut(s) 74
AcvI CACGTG 1 cut(s) 88
AcyI GRCGYC 1 cut(s) 198
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 1 cut(s) 218
Alw21I GWGCWC 1 cut(s) 87
AlwI GGATC 1 cut(s) 111
AoxI GGCC 2 cut(s) 132, 146
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 52, 132, 229
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 2 cut(s) 52, 229
AxyI CCTNAGG 1 cut(s) 57
BbrPI CACGTG 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 259
BlsI GCNGC 1 cut(s) 260
Bme18I GGWCC 2 cut(s) 52, 229
BmgT120I GGNCC 3 cut(s) 52, 132, 229
BmiI GGNNCC 3 cut(s) 54, 230, 231
BpiI GAAGAC 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 233
Bpu10I CCTNAGC 1 cut(s) 38
Bsa29I ATCGAT 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 88
BsaHI GRCGYC 1 cut(s) 198
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bse21I CCTNAGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 106
BseMII CTCAG 2 cut(s) 15, 29
Bsh1236I CGCG 1 cut(s) 261
BshFI GGCC 2 cut(s) 134, 148
BshVI ATCGAT 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 209, 242
BsmFI GGGAC 2 cut(s) 209, 242
BsnI GGCC 2 cut(s) 134, 148
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 3 cut(s) 95, 172, 259
BspANI GGCC 2 cut(s) 134, 148
BspCNI CTCAG 2 cut(s) 16, 30
BspDI ATCGAT 1 cut(s) 106
BspFNI CGCG 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 54, 230, 231
BspPI GGATC 1 cut(s) 111
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 24, 38, 57
BstFNI CGCG 1 cut(s) 261
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstUI CGCG 1 cut(s) 261
BstV2I GAAGAC 1 cut(s) 122
Bsu15I ATCGAT 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 134, 148
BsuTUI ATCGAT 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 264
Cfr13I GGNCC 3 cut(s) 52, 132, 229
ClaI ATCGAT 1 cut(s) 106
CseI GACGC 1 cut(s) 206
CviJI RGCY 4 cut(s) 43, 134, 148, 258
CviKI_1 RGCY 4 cut(s) 43, 134, 148, 258
DdeI CTNAG 3 cut(s) 24, 38, 57
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 52, 229
Eco72I CACGTG 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 57
EcoO109I RGGNCCY 2 cut(s) 52, 229
FaiI YATR 4 cut(s) 11, 93, 153, 237
FaqI GGGAC 2 cut(s) 209, 242
Fnu4HI GCNGC 1 cut(s) 259
Fsp4HI GCNGC 1 cut(s) 259
GluI GCNGC 1 cut(s) 259
GsuI CTGGAG 1 cut(s) 233
HaeIII GGCC 2 cut(s) 134, 148
HapII CCGG 1 cut(s) 145
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 198
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 145
HphI GGTGA 1 cut(s) 109
HpyAV CCTTC 3 cut(s) 94, 212, 254
HpyCH4IV ACGT 1 cut(s) 87
HpyF3I CTNAG 3 cut(s) 24, 38, 57
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 198
KflI GGGWCCC 1 cut(s) 229
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 61, 82
LpnPI CCDG 6 cut(s) 17, 158, 197, 208, 215, 263
MaeII ACGT 1 cut(s) 87
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 74, 178
MnlI CCTC 4 cut(s) 33, 43, 150, 219
MslI CAYNNNNRTG 1 cut(s) 90
MspI CCGG 1 cut(s) 145
MvnI CGCG 1 cut(s) 261
NdeII GATC 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 54, 230, 231
PfeI GAWTC 1 cut(s) 28
PkrI GCNGC 1 cut(s) 260
PmaCI CACGTG 1 cut(s) 88
PmlI CACGTG 1 cut(s) 88
Ppu21I YACGTR 1 cut(s) 88
PpuMI RGGWCCY 2 cut(s) 52, 229
PsiI TTATAA 1 cut(s) 11
Psp5II RGGWCCY 2 cut(s) 52, 229
PspCI CACGTG 1 cut(s) 88
PspN4I GGNNCC 3 cut(s) 54, 230, 231
PspPI GGNCC 3 cut(s) 52, 132, 229
PspPPI RGGWCCY 2 cut(s) 52, 229
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 259
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 3 cut(s) 52, 132, 229
SduI GDGCHC 1 cut(s) 87
SetI ASST 4 cut(s) 90, 142, 216, 246
SinI GGWCC 2 cut(s) 52, 229
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 2 cut(s) 74, 178
SsiI CCGC 3 cut(s) 95, 172, 259
TaiI ACGT 1 cut(s) 90
TaqI TCGA 1 cut(s) 106
TasI AATT 2 cut(s) 74, 178
TauI GCSGC 1 cut(s) 261
TfiI GAWTC 1 cut(s) 28
TscAI CASTG 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 203
TspRI CASTG 1 cut(s) 271
VpaK11BI GGWCC 2 cut(s) 52, 229
XapI RAATTY 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.