Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8345927.1

Orthogroup ID

OG0005350

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 788

Gene Structure 788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8345927.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 500 bp

tggtctcttcaaagttgtccgtgcctgagttaactgtcagtgcacctgtgatatcaccaccattggttgggacggttgttagtaacgtggactcagaaatcagagcagctgtggaaataccaaacgataacattgcactttcatcggcaaaggaagatggccaaacacaagctatctctagttcggggtctcaggatcttcagagaattaaccgagaggaagctgccacaaaggcacagagtgcttatagaggatatgtggctcgccgtgcgtatcgaaccctgaagggcatcataaggctgcaagcacttattcgtggtcatttggttagaagacaagctgtatccacattattatgtgtccaggggattgtgaagtttcaagcactgattcgtggtcagcatgttagacattctgatattggggttgaagtgcaaaaaacacatcaggtaaattctggttaccatttcaatttcattgtgccagagcttactgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

165

Amino Acids

17.96

Weight (kDa)

9.83

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT2G02790 AT2G02790 AT2G02790
fragaria_vesca	FvH4_4g31720 FvH4_4g31720
malus_domestica	MD13G1077100.v1.1 MD16G1077200.v1.1
prunus_persica	Prupe.1G269900_v2.0.a1
pyrus_communis	pycom13g06720 pycom16g06650
rosa_chinensis	RchiOBHm_Chr4g0440321
rosa_laevigata	RLG00000006192
rosa_multiflora	Rmu_co8345927.1_g000001 Rmu_sc0001685.1_g000041
rosa_roxburghii	Rroxscaffold_5G00381200
rosa_rugosa	Rorug04G0325600 Rorug04G0325700
rosa_samantha	Rh4AG376500 Rh4BG389500 Rh4CG404300 Rh4DG383200
rosa_wichuraiana	Rw4G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	67
AclWI	GGATC	1 cut(s)	203
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	1 cut(s)	453
AcuI	CTGAAG	2 cut(s)	184, 304
AdeI	CACNNNGTG	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	11, 382, 430, 471
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	5 cut(s)	109, 172, 223, 340, 489
AluI	AGCT	5 cut(s)	109, 172, 223, 340, 489
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	9, 194
Alw44I	GTGCAC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	106, 223, 300
ApoI	RAATTY	1 cut(s)	453
AsuHPI	GGTGA	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	45
BalI	TGGCCA	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	118, 210, 287
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	251
BcgI	CGANNNNNNTGC	4 cut(s)	115, 125, 149, 159
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	354
BcoDI	GTCTC	2 cut(s)	9, 194
BfaI	CTAG	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	232
BisI	GCNGC	3 cut(s)	107, 224, 301
BlsI	GCNGC	3 cut(s)	108, 225, 302
Bme1390I	CCNGG	1 cut(s)	364
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	1 cut(s)	299
BpiI	GAAGAC	1 cut(s)	339
BsaI	GGTCTC	2 cut(s)	9, 194
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	131
BseMII	CTCAG	3 cut(s)	17, 107, 205
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	118, 210, 287
BshFI	GGCC	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	2 cut(s)	9, 194
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	2 cut(s)	9, 194
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	161
BspCNI	CTCAG	3 cut(s)	18, 106, 204
BspPI	GGATC	1 cut(s)	203
BspTNI	GGTCTC	2 cut(s)	9, 194
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	36, 75, 495
Bst6I	CTCTTC	1 cut(s)	12
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	2 cut(s)	264, 305
BstDEI	CTNAG	3 cut(s)	26, 93, 191
BstEII	GGTNACC	1 cut(s)	460
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	2 cut(s)	9, 194
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	3 cut(s)	232, 241, 268
BstNI	CCWGG	1 cut(s)	364
BstNSI	RCATGY	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	460
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	118, 210, 287
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	45, 385
Cac8I	GCNNGC	2 cut(s)	264, 305
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	8 cut(s)	109, 161, 172, 223, 262, 300, 340, 489
CviKI_1	RGCY	8 cut(s)	109, 161, 172, 223, 262, 300, 340, 489
DdeI	CTNAG	3 cut(s)	26, 93, 191
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
DraIII	CACNNNGTG	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco31I	GGTCTC	2 cut(s)	9, 194
Eco32I	GATATC	1 cut(s)	53
Eco57I	CTGAAG	2 cut(s)	184, 304
Eco91I	GGTNACC	1 cut(s)	460
EcoO65I	GGTNACC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	362
EcoRV	GATATC	1 cut(s)	53
FaeI	CATG	1 cut(s)	406
FaiI	YATR	5 cut(s)	248, 257, 295, 357, 404
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	3 cut(s)	107, 224, 301
Fsp4HI	GCNGC	3 cut(s)	107, 224, 301
FspBI	CTAG	1 cut(s)	179
GluI	GCNGC	3 cut(s)	107, 224, 301
HaeIII	GGCC	1 cut(s)	161
Hin1II	CATG	1 cut(s)	406
HincII	GTYRAC	1 cut(s)	32
HindII	GTYRAC	1 cut(s)	32
HinfI	GANTC	2 cut(s)	91, 390
HpaI	GTTAAC	1 cut(s)	32
HphI	GGTGA	1 cut(s)	47
Hpy166II	GTNNAC	3 cut(s)	32, 43, 90
Hpy188I	TCNGA	5 cut(s)	96, 103, 203, 417, 499
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	3 cut(s)	32, 43, 90
HpyAV	CCTTC	1 cut(s)	279
HpyCH4III	ACNGT	3 cut(s)	36, 75, 495
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	43, 136, 303, 435
HpyF10VI	GCNNNNNNNGC	3 cut(s)	232, 241, 268
HpyF3I	CTNAG	3 cut(s)	26, 93, 191
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	406
KspAI	GTTAAC	1 cut(s)	32
Kzo9I	GATC	1 cut(s)	195
LpnPI	CCDG	8 cut(s)	38, 59, 178, 295, 349, 376, 433, 443
Lsp1109I	GCAGC	3 cut(s)	118, 210, 287
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	82, 460
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	3 cut(s)	166, 190, 344
MflI	RGATCY	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	45
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	3 cut(s)	206, 453, 471
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	210, 244
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	2 cut(s)	31, 209
MslI	CAYNNNNRTG	1 cut(s)	354
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	109
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	3 cut(s)	232, 241, 268
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	1 cut(s)	406
NspI	RCATGY	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	390
PflMI	CCANNNNNTGG	1 cut(s)	67
PkrI	GCNGC	3 cut(s)	108, 225, 302
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp6I	CCWGG	1 cut(s)	362
PspEI	GGTNACC	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	195
PvuII	CAGCTG	1 cut(s)	109
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	31, 209
SatI	GCNGC	3 cut(s)	107, 224, 301
Sau3AI	GATC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	8 cut(s)	48, 89, 111, 174, 225, 342, 452, 491
SfaNI	GCATC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	354
Sse9I	AATT	3 cut(s)	206, 453, 471
SspMI	CTAG	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	36, 75, 495
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	276
TasI	AATT	3 cut(s)	206, 453, 471
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	31, 209
Tru9I	TTAA	2 cut(s)	31, 209
TscAI	CASTG	2 cut(s)	45, 392
TseI	GCWGC	3 cut(s)	106, 223, 300
TspDTI	ATGAA	2 cut(s)	131, 465
TspGWI	ACGGA	1 cut(s)	9
TspRI	CASTG	2 cut(s)	45, 392
Van91I	CCANNNNNTGG	1 cut(s)	67
VneI	GTGCAC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	453
XceI	RCATGY	1 cut(s)	406
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.