Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005350

Physical Location & Seq

Genomic Coordinates Forward (+)

50062242 .. 50064659

Gene Structure 2418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0325600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGAGAACCAGAGGAGGGGTTTGCTATCCCAGAGTTGTTGAAGATGAGAAGATGAAGAGAGTGACCAAGAAGAGGAAGGTGTGTCTGGCTACCGGAAAAGGAATGGTTTGCCGGAAAAGGACTAAGATGATTCCGGTTGGGCCAGATATGTTCGACGATTTGCCGGACGACCTTGTGCTCTGTATTCTCTCCAAGCTCAGCTCCACTGCCAACTGCCCTTCCGATTTCATCAACGTTCTGATAACATGCAAGAGATTGAACGGATTGGGCCTGCAATCACAAGTACTGTCTAAAGCTTCCCCGAAAACGTTTCCGGTGAAGCCCCATAACTGGTCCGAGTCGGCTCACCGATTCCTCAAGATGTTGGCCGACGCCGGCAACGTCGAGGCTTGCTATACTCTCGGCATGATTCGCTTTTACTGCTTGCAAAGCCGAGGCAGCGGCGCGTCTCTAATGGCTAAGGCCGCGATTGGCGGTTACGCGCCGGCGCTCTACTCTCTGGCTGTGATTCAGTTCAATGGGAGCGGCGGCTCCAAGAACGACAAGGACCTCCGTGCCGGAGTTGCTCTGTGCGCGCGTGCTGCCTTTCTCGGCCACATCGACGCTCTCCGGGAGCTGGGGCACTGCCTCCAAGACGGCTACGGCGTCCGGCAGAACATCACGGAGGGAAGACGGTTCCTGGTCCAGGCCAACGCGCGTGAACTCGCGTCGGTTCTGGCATCTGCGGCGGCTTCTGGAATCCCCATGCGGCAGTTGCTGACGTGGACGCCGCTCCCGCATCCTCATCCCCACCCTCATCCTCAGTTGCGTCACCTGACCGGGTCGGGTTGCCCGCTGCTCAGCGACTTCGGGTGCAACGTGCCCGCTCCGGAGGTCCACCCGGCGAACCGGTTCTTGGGAGATTGGTTCGCGGGCCGGGCAGACGGTCTGCCCGGACCGGGTCTGAGGCTGTGCTCGCACGTGGGGTGTGGGAGGCCCGAGACTAGGAGACACGAGTTCCGTCGGTGTTCGGTGTGCGGGGCAGTGAACTACTGCTCACGCGCCTGCCAGGCGCTTGACTGGAAACTGCGGCACAAGGCCGAGTGCGCCGCCGTAGAGAGGTGGGTGGATGAGGACGGAGAAGGCGCGGAGGGTGAGGGAGCCGTTAACGACGGCGATGACGTCATGGAAGAGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005875 GO:0005886 GO:0015630 GO:0016020 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4005 IQ

Protein Analysis

392

Amino Acids

42.56

Weight (kDa)

8.88

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_27	PF23310	104 - 180	3.7e-09	Plant tetratrico peptide repeats
zf-MYND	PF01753	323 - 362	3.7e-08	MYND finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT1G14380 AT2G02790 AT2G02790 AT2G02790
fragaria_vesca	FvH4_4g31720 FvH4_4g31720
malus_domestica	MD13G1077100.v1.1 MD16G1077200.v1.1
prunus_persica	Prupe.1G269900_v2.0.a1
pyrus_communis	pycom13g06720 pycom16g06650
rosa_chinensis	RchiOBHm_Chr4g0440321
rosa_laevigata	RLG00000006192
rosa_multiflora	Rmu_co8345927.1_g000001 Rmu_sc0001685.1_g000041
rosa_roxburghii	Rroxscaffold_5G00381200
rosa_rugosa	Rorug04G0325600 Rorug04G0325700
rosa_samantha	Rh4AG376500 Rh4BG389500 Rh4CG404300 Rh4DG383200
rosa_wichuraiana	Rw4G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1164
AccBSI	CCGCTC	3 cut(s)	525, 772, 866
AccIII	TCCGGA	1 cut(s)	868
AclI	AACGTT	2 cut(s)	234, 308
AcoI	YGGCCR	2 cut(s)	366, 592
AcvI	CACGTG	1 cut(s)	961
AcyI	GRCGYC	4 cut(s)	372, 645, 767, 1161
AfaI	GTAC	1 cut(s)	285
AfiI	CCNNNNNNNGG	9 cut(s)	15, 72, 330, 616, 685, 895, 938, 984, 1098
AgeI	ACCGGT	1 cut(s)	888
AgsI	TTSAA	3 cut(s)	41, 259, 517
AjiI	CACGTC	1 cut(s)	762
AjnI	CCWGG	3 cut(s)	678, 684, 1047
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AluBI	AGCT	4 cut(s)	196, 201, 296, 616
AluI	AGCT	4 cut(s)	196, 201, 296, 616
Alw21I	GWGCWC	2 cut(s)	180, 956
Alw26I	GTCTC	3 cut(s)	453, 974, 982
AlwNI	CAGNNNCTG	1 cut(s)	757
Ama87I	CYCGRG	1 cut(s)	977
Aor13HI	TCCGGA	1 cut(s)	868
AoxI	GGCC	9 cut(s)	140, 268, 366, 462, 592, 687, 913, 974, 1077
ApeKI	GCWGC	3 cut(s)	438, 581, 835
AsiGI	ACCGGT	1 cut(s)	888
Asp700I	GAANNNNTTC	1 cut(s)	890
AspS9I	GGNCC	9 cut(s)	140, 268, 333, 547, 682, 874, 913, 935, 975
AsuC2I	CCSGG	6 cut(s)	611, 820, 881, 917, 933, 939
AsuHPI	GGTGA	4 cut(s)	328, 338, 803, 1145
AvaI	CYCGRG	1 cut(s)	977
AvaII	GGWCC	5 cut(s)	333, 547, 682, 874, 935
BaeGI	GKGCMC	2 cut(s)	624, 864
BauI	CACGAG	1 cut(s)	992
BbrPI	CACGTG	1 cut(s)	961
BbsI	GAAGAC	1 cut(s)	676
Bbv12I	GWGCWC	2 cut(s)	180, 956
BbvI	GCAGC	3 cut(s)	450, 568, 822
BceAI	ACGGC	5 cut(s)	652, 658, 1076, 1127, 1168
BciT130I	CCWGG	3 cut(s)	680, 686, 1049
BcnI	CCSGG	6 cut(s)	611, 820, 881, 917, 933, 939
BcoDI	GTCTC	3 cut(s)	453, 974, 982
BfaI	CTAG	1 cut(s)	984
BfoI	RGCGCY	2 cut(s)	491, 1055
BglI	GCCNNNNNGGC	1 cut(s)	1049
BlpI	GCTNAGC	2 cut(s)	197, 839
BmcAI	AGTACT	1 cut(s)	285
Bme1390I	CCNGG	9 cut(s)	611, 680, 686, 820, 881, 917, 933, 939, 1049
Bme18I	GGWCC	5 cut(s)	333, 547, 682, 874, 935
BmeT110I	CYCGRG	1 cut(s)	977
BmgBI	CACGTC	1 cut(s)	762
BmgT120I	GGNCC	9 cut(s)	140, 268, 333, 547, 682, 874, 913, 935, 975
BmiI	GGNNCC	3 cut(s)	532, 677, 1141
BmrFI	CCNGG	9 cut(s)	611, 680, 686, 820, 881, 917, 933, 939, 1049
BmsI	GCATC	2 cut(s)	728, 787
BpiI	GAAGAC	1 cut(s)	676
Bpu10I	CCTNAGC	1 cut(s)	459
Bpu1102I	GCTNAGC	2 cut(s)	197, 839
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	6 cut(s)	611, 820, 881, 917, 933, 939
BsaAI	YACGTR	1 cut(s)	961
BsaHI	GRCGYC	4 cut(s)	372, 645, 767, 1161
BsaJI	CCNNGG	1 cut(s)	433
BsaWI	WCCGGW	5 cut(s)	92, 133, 313, 868, 888
Bsc4I	CCNNNNNNNGG	9 cut(s)	15, 72, 330, 616, 685, 895, 938, 984, 1098
Bse118I	RCCGGY	3 cut(s)	374, 484, 888
Bse1I	ACTGG	2 cut(s)	335, 1064
BseAI	TCCGGA	1 cut(s)	868
BseBI	CCWGG	3 cut(s)	680, 686, 1049
BseDI	CCNNGG	1 cut(s)	433
BseGI	GGATG	4 cut(s)	778, 784, 796, 1114
BseLI	CCNNNNNNNGG	9 cut(s)	15, 72, 330, 616, 685, 895, 938, 984, 1098
BseMII	CTCAG	4 cut(s)	211, 815, 853, 935
BseNI	ACTGG	2 cut(s)	335, 1064
BsePI	GCGCGC	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	27
BseSI	GKGCMC	2 cut(s)	624, 864
BseXI	GCAGC	3 cut(s)	450, 568, 822
BseYI	CCCAGC	1 cut(s)	616
BshFI	GGCC	9 cut(s)	142, 270, 368, 464, 594, 689, 915, 976, 1079
BshTI	ACCGGT	1 cut(s)	888
BsiHKAI	GWGCWC	2 cut(s)	180, 956
BsiHKCI	CYCGRG	1 cut(s)	977
BslI	CCNNNNNNNGG	9 cut(s)	15, 72, 330, 616, 685, 895, 938, 984, 1098
BsmAI	GTCTC	3 cut(s)	453, 974, 982
BsmBI	CGTCTC	1 cut(s)	453
BsnI	GGCC	9 cut(s)	142, 270, 368, 464, 594, 689, 915, 976, 1079
BsoBI	CYCGRG	1 cut(s)	977
Bsp1286I	GDGCHC	4 cut(s)	180, 624, 864, 956
Bsp13I	TCCGGA	1 cut(s)	868
Bsp1720I	GCTNAGC	2 cut(s)	197, 839
BspANI	GGCC	9 cut(s)	142, 270, 368, 464, 594, 689, 915, 976, 1079
BspCNI	CTCAG	4 cut(s)	210, 814, 852, 936
BspEI	TCCGGA	1 cut(s)	868
BspLI	GGNNCC	3 cut(s)	532, 677, 1141
BsrBI	CCGCTC	3 cut(s)	525, 772, 866
BsrFI	RCCGGY	3 cut(s)	374, 484, 888
BsrI	ACTGG	2 cut(s)	335, 1064
BssAI	RCCGGY	3 cut(s)	374, 484, 888
BssECI	CCNNGG	1 cut(s)	433
BssHII	GCGCGC	1 cut(s)	573
BssNI	GRCGYC	4 cut(s)	372, 645, 767, 1161
BssSI	CACGAG	1 cut(s)	992
Bst2BI	CACGAG	1 cut(s)	992
Bst2UI	CCWGG	3 cut(s)	680, 686, 1049
Bst4CI	ACNGT	3 cut(s)	288, 675, 926
Bst6I	CTCTTC	3 cut(s)	50, 65, 1164
BstACI	GRCGYC	4 cut(s)	372, 645, 767, 1161
BstBAI	YACGTR	1 cut(s)	961
BstDEI	CTNAG	6 cut(s)	123, 197, 459, 801, 839, 944
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	4 cut(s)	778, 784, 796, 1114
BstH2I	RGCGCY	2 cut(s)	491, 1055
BstMAI	GTCTC	3 cut(s)	453, 974, 982
BstNI	CCWGG	3 cut(s)	680, 686, 1049
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	9 cut(s)	609, 678, 684, 818, 879, 915, 931, 937, 1047
BstSLI	GKGCMC	2 cut(s)	624, 864
BstV1I	GCAGC	3 cut(s)	450, 568, 822
BstV2I	GAAGAC	1 cut(s)	676
BsuRI	GGCC	9 cut(s)	142, 270, 368, 464, 594, 689, 915, 976, 1079
BtgZI	GCGATG	1 cut(s)	1170
BtrI	CACGTC	1 cut(s)	762
BtsCI	GGATG	4 cut(s)	778, 784, 796, 1114
BtsI	GCAGTG	3 cut(s)	204, 622, 1029
BtsIMutI	CAGTG	3 cut(s)	204, 622, 1029
CaiI	CAGNNNCTG	1 cut(s)	757
Cfr10I	RCCGGY	3 cut(s)	374, 484, 888
Cfr13I	GGNCC	9 cut(s)	140, 268, 333, 547, 682, 874, 913, 935, 975
CpoI	CGGWCCG	1 cut(s)	935
CseI	GACGC	7 cut(s)	380, 435, 611, 634, 696, 775, 797
Csp6I	GTAC	1 cut(s)	284
CspAI	ACCGGT	1 cut(s)	888
CspI	CGGWCCG	1 cut(s)	935
CviAII	CATG	4 cut(s)	246, 406, 745, 1165
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	6 cut(s)	123, 197, 459, 801, 839, 944
EaeI	YGGCCR	2 cut(s)	366, 592
Eam1104I	CTCTTC	3 cut(s)	50, 65, 1164
EarI	CTCTTC	3 cut(s)	50, 65, 1164
Eco47I	GGWCC	5 cut(s)	333, 547, 682, 874, 935
Eco72I	CACGTG	1 cut(s)	961
Eco88I	CYCGRG	1 cut(s)	977
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRII	CCWGG	3 cut(s)	678, 684, 1047
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	4 cut(s)	249, 409, 748, 1168
FaiI	YATR	7 cut(s)	149, 247, 327, 396, 407, 746, 1166
FatI	CATG	4 cut(s)	245, 405, 744, 1164
FauI	CCCGC	5 cut(s)	783, 840, 871, 904, 1010
FokI	GGATG	4 cut(s)	765, 771, 783, 1121
FspBI	CTAG	1 cut(s)	984
GsaI	CCCAGC	1 cut(s)	620
HaeII	RGCGCY	2 cut(s)	491, 1055
HaeIII	GGCC	9 cut(s)	142, 270, 368, 464, 594, 689, 915, 976, 1079
HgaI	GACGC	7 cut(s)	380, 435, 611, 634, 696, 775, 797
Hin1I	GRCGYC	4 cut(s)	372, 645, 767, 1161
Hin1II	CATG	4 cut(s)	249, 409, 748, 1168
HincII	GTYRAC	1 cut(s)	1147
HindII	GTYRAC	1 cut(s)	1147
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	6 cut(s)	130, 338, 351, 409, 508, 738
HpaI	GTTAAC	1 cut(s)	1147
HphI	GGTGA	4 cut(s)	328, 338, 803, 1145
Hpy166II	GTNNAC	5 cut(s)	701, 765, 877, 1027, 1147
Hpy188I	TCNGA	4 cut(s)	223, 240, 337, 945
Hpy188III	TCNNGA	3 cut(s)	358, 735, 869
Hpy8I	GTNNAC	5 cut(s)	701, 765, 877, 1027, 1147
Hpy99I	CGWCG	7 cut(s)	158, 374, 386, 605, 712, 1005, 1154
HpyAV	CCTTC	3 cut(s)	70, 228, 1115
HpyCH4III	ACNGT	3 cut(s)	288, 675, 926
HpyCH4IV	ACGT	7 cut(s)	234, 308, 381, 761, 858, 960, 1161
HpyCH4V	TGCA	4 cut(s)	249, 274, 427, 855
HpyF3I	CTNAG	6 cut(s)	123, 197, 459, 801, 839, 944
HpySE526I	ACGT	7 cut(s)	234, 308, 381, 761, 858, 960, 1161
Hsp92I	GRCGYC	4 cut(s)	372, 645, 767, 1161
Hsp92II	CATG	4 cut(s)	249, 409, 748, 1168
Kpn2I	TCCGGA	1 cut(s)	868
KroI	GCCGGC	2 cut(s)	374, 484
KroNI	GCCGGC	2 cut(s)	376, 486
KspAI	GTTAAC	1 cut(s)	1147
LmnI	GCTCC	7 cut(s)	206, 522, 536, 613, 777, 871, 1139
Lsp1109I	GCAGC	3 cut(s)	450, 568, 822
LweI	GCATC	2 cut(s)	728, 787
MaeI	CTAG	1 cut(s)	984
MaeII	ACGT	7 cut(s)	234, 308, 381, 761, 858, 960, 1161
MaeIII	GTNAC	3 cut(s)	61, 476, 809
MbiI	CCGCTC	3 cut(s)	525, 772, 866
MboII	GAAGA	5 cut(s)	53, 61, 67, 82, 681
MhlI	GDGCHC	4 cut(s)	180, 624, 864, 956
MlyI	GAGTC	1 cut(s)	347
MreI	CGCCGGCG	1 cut(s)	484
MroI	TCCGGA	1 cut(s)	868
MroNI	GCCGGC	2 cut(s)	374, 484
MroXI	GAANNNNTTC	1 cut(s)	890
MseI	TTAA	2 cut(s)	1146, 1177
MspA1I	CMGCKG	2 cut(s)	441, 835
MspR9I	CCNGG	9 cut(s)	611, 680, 686, 820, 881, 917, 933, 939, 1049
MvaI	CCWGG	3 cut(s)	680, 686, 1049
NaeI	GCCGGC	2 cut(s)	376, 486
NciI	CCSGG	6 cut(s)	611, 820, 881, 917, 933, 939
NgoMIV	GCCGGC	2 cut(s)	374, 484
NlaIII	CATG	4 cut(s)	249, 409, 748, 1168
NlaIV	GGNNCC	3 cut(s)	532, 677, 1141
NmeAIII	GCCGAG	4 cut(s)	381, 458, 570, 1105
NmuCI	GTSAC	2 cut(s)	61, 809
NspI	RCATGY	1 cut(s)	249
PauI	GCGCGC	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	5 cut(s)	378, 597, 642, 855, 1158
PdiI	GCCGGC	2 cut(s)	376, 486
PdmI	GAANNNNTTC	1 cut(s)	890
PfeI	GAWTC	5 cut(s)	130, 351, 409, 508, 738
PflFI	GACNNNGTC	2 cut(s)	820, 939
PfoI	TCCNGGA	1 cut(s)	609
PinAI	ACCGGT	1 cut(s)	888
PleI	GAGTC	1 cut(s)	346
PmaCI	CACGTG	1 cut(s)	961
PmlI	CACGTG	1 cut(s)	961
PpsI	GAGTC	1 cut(s)	346
Ppu21I	YACGTR	1 cut(s)	961
PpuMI	RGGWCCY	1 cut(s)	547
Psp1406I	AACGTT	2 cut(s)	234, 308
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	678, 684, 1047
PspCI	CACGTG	1 cut(s)	961
PspFI	CCCAGC	1 cut(s)	616
PspGI	CCWGG	3 cut(s)	678, 684, 1047
PspN4I	GGNNCC	3 cut(s)	532, 677, 1141
PspPI	GGNCC	9 cut(s)	140, 268, 333, 547, 682, 874, 913, 935, 975
PspPPI	RGGWCCY	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	757
PsyI	GACNNNGTC	2 cut(s)	820, 939
PteI	GCGCGC	1 cut(s)	573
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
Rsr2I	CGGWCCG	1 cut(s)	935
RsrII	CGGWCCG	1 cut(s)	935
SaqAI	TTAA	2 cut(s)	1146, 1177
Sau96I	GGNCC	9 cut(s)	140, 268, 333, 547, 682, 874, 913, 935, 975
ScaI	AGTACT	1 cut(s)	285
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	9 cut(s)	611, 680, 686, 820, 881, 917, 933, 939, 1049
SduI	GDGCHC	4 cut(s)	180, 624, 864, 956
SfaNI	GCATC	2 cut(s)	728, 787
SgrAI	CRCCGGYG	1 cut(s)	484
SinI	GGWCC	5 cut(s)	333, 547, 682, 874, 935
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
SspMI	CTAG	1 cut(s)	984
StyD4I	CCNGG	9 cut(s)	609, 678, 684, 818, 879, 915, 931, 937, 1047
TaaI	ACNGT	3 cut(s)	288, 675, 926
TaiI	ACGT	7 cut(s)	237, 311, 384, 764, 861, 963, 1164
TaqI	TCGA	3 cut(s)	153, 384, 600
TatI	WGTACW	1 cut(s)	283
TfiI	GAWTC	5 cut(s)	130, 351, 409, 508, 738
Tru1I	TTAA	2 cut(s)	1146, 1177
Tru9I	TTAA	2 cut(s)	1146, 1177
TscAI	CASTG	3 cut(s)	211, 629, 1029
TseFI	GTSAC	2 cut(s)	61, 809
TseI	GCWGC	3 cut(s)	438, 581, 835
Tsp45I	GTSAC	2 cut(s)	61, 809
TspDTI	ATGAA	2 cut(s)	68, 217
TspGWI	ACGGA	5 cut(s)	276, 542, 677, 989, 1131
TspRI	CASTG	3 cut(s)	211, 629, 1029
Tth111I	GACNNNGTC	2 cut(s)	820, 939
VpaK11BI	GGWCC	5 cut(s)	333, 547, 682, 874, 935
XagI	CCTNNNNNAGG	1 cut(s)	683
XceI	RCATGY	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	890
XspI	CTAG	1 cut(s)	984
ZraI	GACGTC	1 cut(s)	1162
ZrmI	AGTACT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.