Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8382523.1

Orthogroup ID

OG0008666

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1162

Gene Structure 1161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8382523.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1063 bp

ctgtccagaagcttctccattgattccttcttcaccaccgtcacgaagctctccaacctcaaagtcctatcccttgtctctttaggcctctggggcccactgccggcgaagatcaaccggttctggtcgcttgagcagctcaacattagttcgaatttcatctccggctctgttcctccttcactggcttcgatgaagaatctgaggactattaacttggctgataatctgttcagtgggagtgtcccagatcttaagggcttggcgcttcttgaagaaatcaatttggggaacaaccacattggacctgcgtttccctcgttgggaactagccttgtcagtctcatactgagaaacaattctgtgagatctgaggttcccaaaatgttgaccagctttgaccagctgcagcagctggacctctcctacaataagttcgttggtccaatgccttctttcttgttctcccttccttcacttcagtacctaaatttggctcagaaccaactcagtggggctctttcgttgaacacaacttgcagcgcaaagcttcaagttgtggacgtttcgcagaaccttttgatagggaaactgccttcctgcattggatcgaagtcgtcgaatcggacggttcttgattcgtggaactgtctgtctagtggagtctcaaagtatcagcatccctataggttttgtcaaaaggaggcattggctgtcaagcctccagctaaaactccagaggagaaagaggagtcaaaaataaagataggggttgtgcttggtatcatcggtggtattgttggtgttgctggagtcatagggttgctgattttggtcattatcaaaaaggcacgagaaaggaagacagaagatacatttgacagcagatatcagcccgaaaagtttacatttcgagcatcccaaatgccaaactcagatgcaaggcatgtcccccaaatgatgaggctgccaacccttggtctcccaccgtatcgtgttttcacattggaagaaatcgaggatgcaacgaacaatttcgatgcttcaaacctaatgggggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

38.82

Weight (kDa)

9.18

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008666)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14390 AT2G02780 AT2G02780 AT2G02780
fragaria_vesca	FvH4_4g31730 FvH4_4g31730
malus_domestica	MD13G1077200.v1.1 MD16G1077300.v1.1
prunus_persica	Prupe.1G269800_v2.0.a1
pyrus_communis	pycom13g06730 pycom16g06660
rosa_chinensis	RchiOBHm_Chr4g0440331
rosa_laevigata	RLG00000006191
rosa_multiflora	Rmu_co8366655.1_g000001 Rmu_co8382523.1_g000001 Rmu_sc0001685.1_g000042
rosa_roxburghii	Rroxscaffold_5G00381210
rosa_rugosa	Rorug04G0325700
rosa_samantha	Rh4AG376600 Rh4BG389600 Rh4CG404400 Rh4DG383300
rosa_wichuraiana	Rw4G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB7I	CCANNNNNTGG	1 cut(s)	977
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	2 cut(s)	154, 490
AcuI	CTGAAG	1 cut(s)	464
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	5 cut(s)	103, 323, 493, 977, 1057
AflII	CTTAAG	1 cut(s)	254
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	275, 529, 554, 1047
AluBI	AGCT	8 cut(s)	12, 49, 139, 396, 406, 415, 550, 728
AluI	AGCT	8 cut(s)	12, 49, 139, 396, 406, 415, 550, 728
Alw26I	GTCTC	4 cut(s)	82, 347, 670, 986
AlwI	GGATC	1 cut(s)	616
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	2 cut(s)	85, 94
ApaI	GGGCCC	1 cut(s)	98
ApeKI	GCWGC	6 cut(s)	136, 406, 409, 412, 540, 967
ApoI	RAATTY	2 cut(s)	154, 490
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	358, 1034
AspLEI	GCGC	2 cut(s)	268, 545
AspS9I	GGNCC	5 cut(s)	94, 95, 305, 418, 443
AsuHPI	GGTGA	1 cut(s)	25
AsuII	TTCGAA	1 cut(s)	152
AvaII	GGWCC	3 cut(s)	305, 418, 443
BaeGI	GKGCMC	1 cut(s)	98
BaeI	ACNNNNGTAYC	2 cut(s)	467, 500
BanII	GRGCYC	2 cut(s)	98, 520
BauI	CACGAG	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	869
BbvI	GCAGC	6 cut(s)	148, 393, 421, 424, 552, 954
BcoDI	GTCTC	4 cut(s)	82, 347, 670, 986
BfaI	CTAG	2 cut(s)	330, 657
BfmI	CTRYAG	2 cut(s)	407, 685
BfoI	RGCGCY	1 cut(s)	269
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	316
BglI	GCCNNNNNGGC	1 cut(s)	93
BglII	AGATCT	2 cut(s)	250, 368
BisI	GCNGC	6 cut(s)	137, 407, 410, 413, 541, 968
BlsI	GCNGC	6 cut(s)	138, 408, 411, 414, 542, 969
Bme18I	GGWCC	3 cut(s)	305, 418, 443
BmgT120I	GGNCC	5 cut(s)	94, 95, 305, 418, 443
BmiI	GGNNCC	3 cut(s)	95, 96, 378
BmsI	GCATC	5 cut(s)	688, 926, 928, 1012, 1030
BpiI	GAAGAC	1 cut(s)	869
BpmI	CTGGAG	3 cut(s)	708, 720, 831
Bpu14I	TTCGAA	1 cut(s)	152
BpuEI	CTTGAG	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	1 cut(s)	976
BsaWI	WCCGGW	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	5 cut(s)	103, 323, 493, 977, 1057
Bse118I	RCCGGY	2 cut(s)	103, 117
Bse1I	ACTGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	976
BseGI	GGATG	3 cut(s)	679, 917, 1027
BseLI	CCNNNNNNNGG	5 cut(s)	103, 323, 493, 977, 1057
BseMII	CTCAG	6 cut(s)	194, 341, 363, 512, 523, 948
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	755, 764
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	6 cut(s)	148, 393, 421, 424, 552, 954
BshFI	GGCC	2 cut(s)	87, 96
BshTI	ACCGGT	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	104, 118, 165
BslFI	GGGAC	2 cut(s)	230, 935
BslI	CCNNNNNNNGG	5 cut(s)	103, 323, 493, 977, 1057
BsmAI	GTCTC	4 cut(s)	82, 347, 670, 986
BsmFI	GGGAC	2 cut(s)	230, 935
BsnI	GGCC	2 cut(s)	87, 96
Bso31I	GGTCTC	1 cut(s)	986
Bsp119I	TTCGAA	1 cut(s)	152
Bsp120I	GGGCCC	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	98, 520
Bsp143I	GATC	4 cut(s)	111, 250, 368, 608
BspANI	GGCC	2 cut(s)	87, 96
BspCNI	CTCAG	6 cut(s)	195, 342, 364, 511, 522, 947
BspLI	GGNNCC	3 cut(s)	95, 96, 378
BspMAI	CTGCAG	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	616
BspT104I	TTCGAA	1 cut(s)	152
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	986
BsrFI	RCCGGY	2 cut(s)	103, 117
BsrI	ACTGG	1 cut(s)	189
BssAI	RCCGGY	2 cut(s)	103, 117
BssECI	CCNNGG	1 cut(s)	976
BssMI	GATC	4 cut(s)	111, 250, 368, 608
BssSI	CACGAG	1 cut(s)	852
BssT1I	CCWWGG	1 cut(s)	976
Bst2BI	CACGAG	1 cut(s)	852
Bst4CI	ACNGT	4 cut(s)	40, 631, 650, 990
BstAFI	CTTAAG	1 cut(s)	254
BstBI	TTCGAA	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	6 cut(s)	203, 350, 372, 498, 509, 934
BstF5I	GGATG	3 cut(s)	679, 917, 1027
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 545
BstKTI	GATC	4 cut(s)	114, 253, 371, 611
BstMAI	GTCTC	4 cut(s)	82, 347, 670, 986
BstMBI	GATC	4 cut(s)	111, 250, 368, 608
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 136, 412
BstNSI	RCATGY	1 cut(s)	950
BstSFI	CTRYAG	2 cut(s)	407, 685
BstSLI	GKGCMC	1 cut(s)	98
BstV1I	GCAGC	6 cut(s)	148, 393, 421, 424, 552, 954
BstV2I	GAAGAC	1 cut(s)	869
BstX2I	RGATCY	2 cut(s)	250, 368
BstXI	CCANNNNNNTGG	1 cut(s)	512
BstYI	RGATCY	2 cut(s)	250, 368
BsuRI	GGCC	2 cut(s)	87, 96
BtsCI	GGATG	3 cut(s)	679, 917, 1027
BtsI	GCAGTG	1 cut(s)	98
BtsIMutI	CAGTG	4 cut(s)	98, 182, 241, 517
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	2 cut(s)	268, 545
Cfr10I	RCCGGY	2 cut(s)	103, 117
Cfr13I	GGNCC	5 cut(s)	94, 95, 305, 418, 443
Csp6I	GTAC	1 cut(s)	484
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	1 cut(s)	947
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	6 cut(s)	203, 350, 372, 498, 509, 934
DpnI	GATC	4 cut(s)	113, 252, 370, 610
DpnII	GATC	4 cut(s)	111, 250, 368, 608
Eco130I	CCWWGG	1 cut(s)	976
Eco147I	AGGCCT	1 cut(s)	87
Eco24I	GRGCYC	2 cut(s)	98, 520
Eco31I	GGTCTC	1 cut(s)	986
Eco32I	GATATC	1 cut(s)	890
Eco47I	GGWCC	3 cut(s)	305, 418, 443
Eco57I	CTGAAG	1 cut(s)	464
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRV	GATATC	1 cut(s)	890
EcoT14I	CCWWGG	1 cut(s)	976
EcoT38I	GRGCYC	2 cut(s)	98, 520
ErhI	CCWWGG	1 cut(s)	976
FaeI	CATG	1 cut(s)	950
FaiI	YATR	4 cut(s)	347, 687, 818, 948
FaqI	GGGAC	2 cut(s)	230, 935
FatI	CATG	1 cut(s)	946
Fnu4HI	GCNGC	6 cut(s)	137, 407, 410, 413, 541, 968
FokI	GGATG	3 cut(s)	666, 904, 1034
FriOI	GRGCYC	2 cut(s)	98, 520
Fsp4HI	GCNGC	6 cut(s)	137, 407, 410, 413, 541, 968
FspBI	CTAG	2 cut(s)	330, 657
GlaI	GCGC	2 cut(s)	267, 544
GluI	GCNGC	6 cut(s)	137, 407, 410, 413, 541, 968
GsuI	CTGGAG	3 cut(s)	708, 720, 831
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	87, 96
HapII	CCGG	3 cut(s)	104, 118, 165
HhaI	GCGC	2 cut(s)	268, 545
Hin1II	CATG	1 cut(s)	950
Hin6I	GCGC	2 cut(s)	266, 543
HinP1I	GCGC	2 cut(s)	266, 543
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	2 cut(s)	10, 548
HinfI	GANTC	7 cut(s)	23, 199, 622, 638, 663, 752, 813
HpaII	CCGG	3 cut(s)	104, 118, 165
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	3 cut(s)	390, 562, 906
Hpy188I	TCNGA	5 cut(s)	204, 373, 501, 627, 937
Hpy188III	TCNNGA	5 cut(s)	6, 43, 272, 635, 737
Hpy8I	GTNNAC	3 cut(s)	390, 562, 906
Hpy99I	CGWCG	1 cut(s)	622
HpyAV	CCTTC	6 cut(s)	37, 189, 462, 479, 483, 606
HpyCH4III	ACNGT	4 cut(s)	40, 631, 650, 990
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	5 cut(s)	409, 540, 603, 941, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 136, 412
HpyF3I	CTNAG	6 cut(s)	203, 350, 372, 498, 509, 934
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	950
HspAI	GCGC	2 cut(s)	266, 543
KroI	GCCGGC	1 cut(s)	103
KroNI	GCCGGC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	111, 250, 368, 608
Lsp1109I	GCAGC	6 cut(s)	148, 393, 421, 424, 552, 954
LweI	GCATC	5 cut(s)	688, 926, 928, 1012, 1030
MaeI	CTAG	2 cut(s)	330, 657
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	4 cut(s)	113, 252, 370, 610
MboI	GATC	4 cut(s)	111, 250, 368, 608
MboII	GAAGA	7 cut(s)	22, 121, 208, 287, 874, 881, 1022
MflI	RGATCY	2 cut(s)	250, 368
MhlI	GDGCHC	2 cut(s)	98, 520
MluCI	AATT	5 cut(s)	154, 283, 358, 490, 1033
MlyI	GAGTC	3 cut(s)	672, 761, 822
MmeI	TCCRAC	1 cut(s)	78
MroNI	GCCGGC	1 cut(s)	103
MroXI	GAANNNNTTC	2 cut(s)	358, 1034
MseI	TTAA	2 cut(s)	213, 255
MspA1I	CMGCKG	2 cut(s)	406, 415
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	3 cut(s)	104, 118, 165
MwoI	GCNNNNNNNGC	3 cut(s)	93, 136, 412
NaeI	GCCGGC	1 cut(s)	105
NdeII	GATC	4 cut(s)	111, 250, 368, 608
NgoMIV	GCCGGC	1 cut(s)	103
NlaIII	CATG	1 cut(s)	950
NlaIV	GGNNCC	3 cut(s)	95, 96, 378
NmuCI	GTSAC	1 cut(s)	40
NspI	RCATGY	1 cut(s)	950
NspV	TTCGAA	1 cut(s)	152
PceI	AGGCCT	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PdiI	GCCGGC	1 cut(s)	105
PdmI	GAANNNNTTC	2 cut(s)	358, 1034
PfeI	GAWTC	4 cut(s)	23, 199, 622, 638
PflMI	CCANNNNNTGG	1 cut(s)	977
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	6 cut(s)	138, 408, 411, 414, 542, 969
PleI	GAGTC	3 cut(s)	671, 760, 821
PpsI	GAGTC	3 cut(s)	671, 760, 821
PspN4I	GGNNCC	3 cut(s)	95, 96, 378
PspOMI	GGGCCC	1 cut(s)	94
PspPI	GGNCC	5 cut(s)	94, 95, 305, 418, 443
PstI	CTGCAG	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	2 cut(s)	250, 368
PvuII	CAGCTG	2 cut(s)	406, 415
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	2 cut(s)	213, 255
SatI	GCNGC	6 cut(s)	137, 407, 410, 413, 541, 968
Sau3AI	GATC	4 cut(s)	111, 250, 368, 608
Sau96I	GGNCC	5 cut(s)	94, 95, 305, 418, 443
SchI	GAGTC	3 cut(s)	672, 761, 822
SduI	GDGCHC	2 cut(s)	98, 520
SfaNI	GCATC	5 cut(s)	688, 926, 928, 1012, 1030
SfcI	CTRYAG	2 cut(s)	407, 685
SfiI	GGCCNNNNNGGCC	1 cut(s)	93
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	3 cut(s)	305, 418, 443
SmlI	CTYRAG	2 cut(s)	131, 254
SmoI	CTYRAG	2 cut(s)	131, 254
Sse9I	AATT	5 cut(s)	154, 283, 358, 490, 1033
SseBI	AGGCCT	1 cut(s)	87
SspMI	CTAG	2 cut(s)	330, 657
StuI	AGGCCT	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	4 cut(s)	40, 631, 650, 990
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	7 cut(s)	152, 191, 611, 620, 913, 1017, 1038
TasI	AATT	5 cut(s)	154, 283, 358, 490, 1033
TfiI	GAWTC	4 cut(s)	23, 199, 622, 638
Tru1I	TTAA	2 cut(s)	213, 255
Tru9I	TTAA	2 cut(s)	213, 255
TscAI	CASTG	4 cut(s)	105, 189, 241, 517
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	6 cut(s)	136, 406, 409, 412, 540, 967
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	148, 209
TspRI	CASTG	4 cut(s)	105, 189, 241, 517
Van91I	CCANNNNNTGG	1 cut(s)	977
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	305, 418, 443
XapI	RAATTY	2 cut(s)	154, 490
XceI	RCATGY	1 cut(s)	950
XmnI	GAANNNNTTC	2 cut(s)	358, 1034
XspI	CTAG	2 cut(s)	330, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.