Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386795.1

Orthogroup ID

OG0020056

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 482

Gene Structure 481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386795.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgggcattgtgaaatcattgtcaactgatgtggaagatggagatgaggatgggaatgatactagagcagtggttgttgattttgatgctgatgtgaggaaatgtgttgagcttgatttcttgatgggagaatggttgatcaagtgtctaaagcaaacttttgatgaagttaagaaagtgggactttttcctctccacgagcaggttgagctatttgcagggcaaattcctgatgttccgttctgccagcttcttgacaaattttggcaaaaattgccgctggatgggtcatacttcttgtgtcaacatgatcatataaagaaagttgcaaatatgttacagaaggttcaggagttgtctctggaggatcgttttaacttttgttttgcccca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SUV3_C

Protein Analysis

131

Amino Acids

15.07

Weight (kDa)

4.6

Isoelectric Point (pI)

18.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020056)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8386795.1_g000001 Rmu_sc0000979.1_g000011 Rmu_ssc0000177.1_g000022
rosa_roxburghii	Rroxscaffold_4G00313050
rosa_rugosa	Rorug01G0147700.1 Rorug01G0150300.1
rosa_samantha	Rh1DG167000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	375
AcsI	RAATTY	2 cut(s)	225, 260
AfiI	CCNNNNNNNGG	2 cut(s)	202, 284
AluBI	AGCT	3 cut(s)	112, 211, 250
AluI	AGCT	3 cut(s)	112, 211, 250
Alw26I	GTCTC	1 cut(s)	363
AlwI	GGATC	1 cut(s)	375
ApoI	RAATTY	2 cut(s)	225, 260
BauI	CACGAG	1 cut(s)	197
BccI	CCATC	4 cut(s)	32, 44, 118, 278
BclI	TGATCA	2 cut(s)	138, 310
BcoDI	GTCTC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmsI	GCATC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	383
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 284
BseGI	GGATG	2 cut(s)	55, 289
BseLI	CCNNNNNNNGG	2 cut(s)	202, 284
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	202, 284
BsmAI	GTCTC	1 cut(s)	363
BsmFI	GGGAC	1 cut(s)	195
Bsp143I	GATC	3 cut(s)	138, 310, 367
BspACI	CCGC	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	1 cut(s)	375
BssMI	GATC	3 cut(s)	138, 310, 367
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	55, 289
BstKTI	GATC	3 cut(s)	141, 313, 370
BstMAI	GTCTC	1 cut(s)	363
BstMBI	GATC	3 cut(s)	138, 310, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 274
BtsCI	GGATG	2 cut(s)	55, 289
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	3 cut(s)	112, 211, 250
CviKI_1	RGCY	3 cut(s)	112, 211, 250
DpnI	GATC	3 cut(s)	140, 312, 369
DpnII	GATC	3 cut(s)	138, 310, 367
FaeI	CATG	1 cut(s)	311
FaiI	YATR	5 cut(s)	292, 309, 315, 317, 335
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	307
FbaI	TGATCA	2 cut(s)	138, 310
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	2 cut(s)	62, 296
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	278
GsuI	CTGGAG	1 cut(s)	383
Hin1II	CATG	1 cut(s)	311
HincII	GTYRAC	2 cut(s)	24, 305
HindII	GTYRAC	2 cut(s)	24, 305
Hpy166II	GTNNAC	2 cut(s)	24, 305
Hpy188III	TCNNGA	5 cut(s)	121, 230, 254, 350, 362
Hpy8I	GTNNAC	2 cut(s)	24, 305
HpyAV	CCTTC	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	218, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 274
Hsp92II	CATG	1 cut(s)	311
Ksp22I	TGATCA	2 cut(s)	138, 310
Kzo9I	GATC	3 cut(s)	138, 310, 367
LpnPI	CCDG	7 cut(s)	188, 204, 243, 260, 266, 335, 347
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	3 cut(s)	140, 312, 369
MboI	GATC	3 cut(s)	138, 310, 367
MboII	GAAGA	1 cut(s)	47
MluCI	AATT	3 cut(s)	225, 260, 272
MnlI	CCTC	4 cut(s)	40, 90, 201, 358
MseI	TTAA	2 cut(s)	171, 375
MspA1I	CMGCKG	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	208, 274
NdeII	GATC	3 cut(s)	138, 310, 367
NlaIII	CATG	1 cut(s)	311
PkrI	GCNGC	1 cut(s)	279
SaqAI	TTAA	2 cut(s)	171, 375
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	3 cut(s)	138, 310, 367
SetI	ASST	5 cut(s)	114, 207, 213, 252, 348
SfaNI	GCATC	1 cut(s)	76
Sse9I	AATT	3 cut(s)	225, 260, 272
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	1 cut(s)	63
TasI	AATT	3 cut(s)	225, 260, 272
TauI	GCSGC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	171, 375
Tru9I	TTAA	2 cut(s)	171, 375
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	180
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	75
XapI	RAATTY	2 cut(s)	225, 260
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.