Rroxscaffold_4G00313050

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0020056
Physical Location & Seq
Forward (+)
36237023 .. 36240157
3135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00313050.1

Sequence Viewer

Length: 267 bp
ATGGCGATAGGGAAGGAGAAAGAGGACGACAAAGGAAGAAATGATGGGGAGAACCTCCCTGTCAATATTGGTATGGGCACACCGAGGGTTTCTGCTCTTAACAATAAAGAACTCTTGGATCTTGAGACTAAGCATCAAGTGTTGTCAATGTATATGTGGTTGTCACACCACTTCAAGGAAGAAACTTTTCCTTATGTCAAGAAGGCTGAGGCAATGGCTACAGATATTGCTGAATTGTTGGGACAGTCCCTGGCCAGTGCTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

88

Amino Acids

9.82

Weight (kDa)

5.26

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SUV3_C PF12513 38 - 85 1.8e-12 ATP-dependent RNA helicase SUV3 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020056)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8386795.1_g000001 Rmu_sc0000979.1_g000011 Rmu_ssc0000177.1_g000022
rosa_roxburghii Rroxscaffold_4G00313050
rosa_rugosa Rorug01G0147700.1 Rorug01G0150300.1
rosa_samantha Rh1DG167000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 126
AcoI YGGCCR 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 175
AjnI CCWGG 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 1 cut(s) 126
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 1 cut(s) 252
Asp700I GAANNNNTTC 1 cut(s) 186
BaeGI GKGCMC 1 cut(s) 80
BalI TGGCCA 1 cut(s) 254
BbvCI CCTCAGC 1 cut(s) 207
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 265
BfmI CTRYAG 1 cut(s) 219
Bme1390I CCNGG 1 cut(s) 251
BmrFI CCNGG 1 cut(s) 251
BmsI GCATC 1 cut(s) 142
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 83, 249
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 255
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 2 cut(s) 83, 249
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 80
BshFI GGCC 1 cut(s) 254
BslFI GGGAC 2 cut(s) 232, 255
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 232, 255
BsnI GGCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 118
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 1 cut(s) 199
BspPI GGATC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 255
BssECI CCNNGG 2 cut(s) 83, 249
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 129, 207
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 251
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 1 cut(s) 219
BstSLI GKGCMC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 250
CviJI RGCY 3 cut(s) 206, 218, 254
CviKI_1 RGCY 3 cut(s) 206, 218, 254
DdeI CTNAG 2 cut(s) 129, 207
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EaeI YGGCCR 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 249
FaiI YATR 4 cut(s) 74, 153, 155, 195
FaqI GGGAC 2 cut(s) 232, 255
FspBI CTAG 1 cut(s) 265
HaeIII GGCC 1 cut(s) 254
Hpy188III TCNNGA 2 cut(s) 122, 199
HpyAV CCTTC 2 cut(s) 7, 196
HpyCH4III ACNGT 1 cut(s) 246
HpyF3I CTNAG 2 cut(s) 129, 207
Kzo9I GATC 1 cut(s) 118
LpnPI CCDG 3 cut(s) 72, 236, 263
LweI GCATC 1 cut(s) 142
MaeI CTAG 1 cut(s) 265
MaeIII GTNAC 1 cut(s) 162
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 2 cut(s) 48, 191
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 254
MluCI AATT 1 cut(s) 233
MluNI TGGCCA 1 cut(s) 254
MnlI CCTC 4 cut(s) 16, 65, 78, 202
Mox20I TGGCCA 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 186
MscI TGGCCA 1 cut(s) 254
MseI TTAA 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
NdeII GATC 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 162
PdmI GAANNNNTTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 1 cut(s) 118
SaqAI TTAA 1 cut(s) 99
Sau3AI GATC 1 cut(s) 118
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 1 cut(s) 80
SetI ASST 1 cut(s) 57
SfaNI GCATC 1 cut(s) 142
SfcI CTRYAG 1 cut(s) 219
SgeI CNNG 9 cut(s) 71, 96, 127, 134, 149, 187, 211, 262, 263
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 233
SspI AATATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 249
TaaI ACNGT 1 cut(s) 246
TasI AATT 1 cut(s) 233
Tru1I TTAA 1 cut(s) 99
Tru9I TTAA 1 cut(s) 99
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 162
TspRI CASTG 1 cut(s) 262
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.