Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000979.1

Orthogroup ID

OG0020056

Physical Location & Seq

Genomic Coordinates Forward (+)

71496 .. 72198

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000979.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

atgggcattgtgaaatcattgtcaactgatgtggaagatggagatgaggatgggaatgatactagagcagtggttgttgattttgatgctgatgtgaggaaatgtgttgagcttgatttcttgatgggagaatggttgatcaagtgtctaaagcaaacttttgatgaagttaagaaagtgggactttttcctctccacgagcaggttgagctatttgcagggcaaattcctgatgttccgttctgccagcttcttgacaaattttggcaaaaattgccgctggatgggtcatacttcttgtgtcaacatgatcatataaagaaagttgcaaatatgttacagaaggttcaggagttgtctctggaggatcgttttaacttttgttttgccccagccccagtaaatattagagacccagaagctatgttccatcttctaaagtttgcttcatcatctggtgagaacctccctgtcaatattggtacgggcataccgatggcttctgctcgtaacaataaagaactcttggatcttgagactaagcatcaaatgttgtcaatgtatatgtggttgtttttacaagatggaacaattgtaatagggtttgaaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SUV3_C

Protein Analysis

204

Amino Acids

23.19

Weight (kDa)

4.71

Isoelectric Point (pI)

33.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020056)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8386795.1_g000001 Rmu_sc0000979.1_g000011 Rmu_ssc0000177.1_g000022
rosa_roxburghii	Rroxscaffold_4G00313050
rosa_rugosa	Rorug01G0147700.1 Rorug01G0150300.1
rosa_samantha	Rh1DG167000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	193
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	2 cut(s)	375, 537
AcsI	RAATTY	2 cut(s)	225, 260
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	202, 284
AgsI	TTSAA	1 cut(s)	608
AluBI	AGCT	5 cut(s)	112, 211, 250, 422, 612
AluI	AGCT	5 cut(s)	112, 211, 250, 422, 612
Alw26I	GTCTC	3 cut(s)	363, 405, 530
AlwI	GGATC	2 cut(s)	375, 537
ApoI	RAATTY	2 cut(s)	225, 260
AsuHPI	GGTGA	1 cut(s)	470
BauI	CACGAG	1 cut(s)	197
BccI	CCATC	7 cut(s)	32, 44, 118, 278, 438, 490, 578
BclI	TGATCA	2 cut(s)	138, 310
BcoDI	GTCTC	3 cut(s)	363, 405, 530
BfaI	CTAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	1 cut(s)	278
BlsI	GCNGC	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	2 cut(s)	76, 553
BmuI	ACTGGG	1 cut(s)	392
BpmI	CTGGAG	1 cut(s)	383
BpuEI	CTTGAG	1 cut(s)	554
BsaI	GGTCTC	1 cut(s)	405
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 284
Bse1I	ACTGG	1 cut(s)	398
BseGI	GGATG	2 cut(s)	55, 289
BseLI	CCNNNNNNNGG	2 cut(s)	202, 284
BseNI	ACTGG	1 cut(s)	398
BseYI	CCCAGC	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	202, 284
BsmAI	GTCTC	3 cut(s)	363, 405, 530
BsmFI	GGGAC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	405
Bsp143I	GATC	4 cut(s)	138, 310, 367, 529
BspACI	CCGC	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	193
BspPI	GGATC	2 cut(s)	375, 537
BspTNI	GGTCTC	1 cut(s)	405
BsrI	ACTGG	1 cut(s)	398
BssMI	GATC	4 cut(s)	138, 310, 367, 529
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstC8I	GCNNGC	1 cut(s)	248
BstDEI	CTNAG	1 cut(s)	540
BstF5I	GGATG	2 cut(s)	55, 289
BstKTI	GATC	4 cut(s)	141, 313, 370, 532
BstMAI	GTCTC	3 cut(s)	363, 405, 530
BstMBI	GATC	4 cut(s)	138, 310, 367, 529
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 274
BstX2I	RGATCY	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	529
BtsCI	GGATG	2 cut(s)	55, 289
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	1 cut(s)	75
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	483
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CviAII	CATG	1 cut(s)	308
CviJI	RGCY	7 cut(s)	112, 211, 250, 395, 422, 500, 612
CviKI_1	RGCY	7 cut(s)	112, 211, 250, 395, 422, 500, 612
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	4 cut(s)	140, 312, 369, 531
DpnII	GATC	4 cut(s)	138, 310, 367, 529
Eco31I	GGTCTC	1 cut(s)	405
FaeI	CATG	1 cut(s)	311
FaiI	YATR	9 cut(s)	292, 309, 315, 317, 335, 425, 491, 564, 566
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FaqI	GGGAC	1 cut(s)	195
FatI	CATG	1 cut(s)	307
FbaI	TGATCA	2 cut(s)	138, 310
Fnu4HI	GCNGC	1 cut(s)	278
FokI	GGATG	2 cut(s)	62, 296
Fsp4HI	GCNGC	1 cut(s)	278
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	395
GsuI	CTGGAG	1 cut(s)	383
Hin1II	CATG	1 cut(s)	311
HincII	GTYRAC	2 cut(s)	24, 305
HindII	GTYRAC	2 cut(s)	24, 305
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	24, 305
Hpy188III	TCNNGA	6 cut(s)	121, 230, 254, 350, 362, 533
Hpy8I	GTNNAC	2 cut(s)	24, 305
HpyAV	CCTTC	1 cut(s)	337
HpyCH4V	TGCA	2 cut(s)	218, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 274
HpyF3I	CTNAG	1 cut(s)	540
Hsp92II	CATG	1 cut(s)	311
Ksp22I	TGATCA	2 cut(s)	138, 310
Kzo9I	GATC	4 cut(s)	138, 310, 367, 529
LweI	GCATC	2 cut(s)	76, 553
MaeI	CTAG	1 cut(s)	63
MaeIII	GTNAC	2 cut(s)	336, 509
MalI	GATC	4 cut(s)	140, 312, 369, 531
MboI	GATC	4 cut(s)	138, 310, 367, 529
MboII	GAAGA	2 cut(s)	47, 425
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	1 cut(s)	529
MluCI	AATT	4 cut(s)	225, 260, 272, 591
MnlI	CCTC	5 cut(s)	40, 90, 201, 358, 476
MseI	TTAA	2 cut(s)	171, 375
MslI	CAYNNNNRTG	1 cut(s)	494
MspA1I	CMGCKG	1 cut(s)	280
MunI	CAATTG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	208, 274
NdeII	GATC	4 cut(s)	138, 310, 367, 529
NlaIII	CATG	1 cut(s)	311
PcsI	WCGNNNNNNNCGW	1 cut(s)	491
PkrI	GCNGC	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	529
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	171, 375
SatI	GCNGC	1 cut(s)	278
Sau3AI	GATC	4 cut(s)	138, 310, 367, 529
SetI	ASST	8 cut(s)	114, 207, 213, 252, 348, 424, 468, 614
SfaNI	GCATC	2 cut(s)	76, 553
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	225, 260, 272, 591
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	2 cut(s)	406, 478
SspMI	CTAG	1 cut(s)	63
TasI	AATT	4 cut(s)	225, 260, 272, 591
TauI	GCSGC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	171, 375
Tru9I	TTAA	2 cut(s)	171, 375
TscAI	CASTG	1 cut(s)	75
TspDTI	ATGAA	2 cut(s)	180, 438
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	75
XapI	RAATTY	2 cut(s)	225, 260
XspI	CTAG	1 cut(s)	63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.