Rh1DG167000

ATP-dependent RNA helicase SUPV3L1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0020056
Physical Location & Seq
Reverse (-)
34306685 .. 34307036
352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG167000.1

Sequence Viewer

Length: 243 bp
ATGGGCATTGTGGAAGATGGAGATGATGATGGGAATGATACTAGAACAGTGGTTGCTGATTTTGATGCTGATGTGGGGAAAAGTGTTGAGCTTGATTTCTTAATTAAGTTTTTGTTTCATGTGGTTGTTGAGTACTGTTTGGAAGAGTTTCCTGAGGAGATCAAGCGTTTTCGTGGTATGATTGCATCCGCGGATATCGCTAAGCCCCATACTTGGTCCCATTGCTCGGGATATGAAGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000177 GO:0000178 GO:0000957 GO:0000958 GO:0000959 GO:0000960 GO:0000962 GO:0000963 GO:0000965 GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005759 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006396 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007005 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009056 GO:0009057 GO:0009628 GO:0009651 GO:0009653 GO:0009892 GO:0009893 GO:0009894 GO:0009896 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010928 GO:0010929 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019439 GO:0023051 GO:0023056 GO:0030307 GO:0031123 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0032392 GO:0032502 GO:0032508 GO:0032989 GO:0032990 GO:0032991 GO:0034458 GO:0034641 GO:0034655 GO:0035945 GO:0035946 GO:0040008 GO:0042623 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043954 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045025 GO:0045927 GO:0045935 GO:0046483 GO:0046700 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070035 GO:0070584 GO:0070827 GO:0071025 GO:0071026 GO:0071103 GO:0071704 GO:0071840 GO:0080036 GO:0080038 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098798 GO:0140053 GO:0140097 GO:0140098 GO:1901000 GO:1901002 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1902494 GO:1902584 GO:1905354 GO:2000070 GO:2000827
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Helicase_C SUV3_C

Protein Analysis

80

Amino Acids

9.0

Weight (kDa)

4.34

Isoelectric Point (pI)

14.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DExH18_N PF23703 36 - 57 8.7e-06 DExH-box ATP-dependent RNA helicase DExH18, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020056)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8386795.1_g000001 Rmu_sc0000979.1_g000011 Rmu_ssc0000177.1_g000022
rosa_roxburghii Rroxscaffold_4G00313050
rosa_rugosa Rorug01G0147700.1 Rorug01G0150300.1
rosa_samantha Rh1DG167000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 191
AciI CCGC 2 cut(s) 189, 191
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 213, 226
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 147
AspS9I GGNCC 1 cut(s) 216
AvaI CYCGRG 1 cut(s) 226
AvaII GGWCC 1 cut(s) 216
AxyI CCTNAGG 1 cut(s) 153
BccI CCATC 2 cut(s) 11, 23
BfaI CTAG 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 201
BmcAI AGTACT 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 216
BmeT110I CYCGRG 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 1 cut(s) 218
BmsI GCATC 2 cut(s) 55, 194
Bpu1102I GCTNAGC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 226
Bse21I CCTNAGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 213, 226
BseMI GCAATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 202
BslI CCNNNNNNNGG 2 cut(s) 213, 226
BsmFI GGGAC 1 cut(s) 202
BsoBI CYCGRG 1 cut(s) 226
Bsp143I GATC 1 cut(s) 159
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 2 cut(s) 189, 191
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 49, 137
Bst6I CTCTTC 1 cut(s) 138
BstDEI CTNAG 2 cut(s) 153, 201
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 191
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstUI CGCG 1 cut(s) 191
Bsu36I CCTNAGG 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 54
Cfr13I GGNCC 1 cut(s) 216
Cfr42I CCGCGG 1 cut(s) 192
Csp6I GTAC 1 cut(s) 133
CviAII CATG 1 cut(s) 119
CviJI RGCY 2 cut(s) 91, 205
CviKI_1 RGCY 2 cut(s) 91, 205
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 2 cut(s) 153, 201
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 138
EarI CTCTTC 1 cut(s) 138
Eco32I GATATC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 153
Eco88I CYCGRG 1 cut(s) 226
EcoRV GATATC 1 cut(s) 196
FaeI CATG 1 cut(s) 122
FaiI YATR 4 cut(s) 120, 179, 210, 234
FaqI GGGAC 1 cut(s) 202
FatI CATG 1 cut(s) 118
FokI GGATG 1 cut(s) 172
FspBI CTAG 1 cut(s) 42
Hin1II CATG 1 cut(s) 122
Hpy188III TCNNGA 2 cut(s) 152, 228
HpyCH4III ACNGT 2 cut(s) 49, 137
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 2 cut(s) 153, 201
Hsp92II CATG 1 cut(s) 122
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 1 cut(s) 159
LpnPI CCDG 1 cut(s) 165
LweI GCATC 2 cut(s) 55, 194
MaeI CTAG 1 cut(s) 42
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 2 cut(s) 26, 155
MluCI AATT 1 cut(s) 102
MnlI CCTC 1 cut(s) 148
MroXI GAANNNNTTC 1 cut(s) 147
MseI TTAA 2 cut(s) 101, 105
MspA1I CMGCKG 1 cut(s) 191
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeII GATC 1 cut(s) 159
NlaIII CATG 1 cut(s) 122
NlaIV GGNNCC 1 cut(s) 218
PacI TTAATTAA 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 216
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 2 cut(s) 101, 105
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 216
ScaI AGTACT 1 cut(s) 134
SetI ASST 1 cut(s) 93
SfaNI GCATC 2 cut(s) 55, 194
Sfr303I CCGCGG 1 cut(s) 192
SgeI CNNG 9 cut(s) 54, 104, 131, 164, 175, 185, 202, 225, 238
SgrBI CCGCGG 1 cut(s) 192
SinI GGWCC 1 cut(s) 216
Sse9I AATT 1 cut(s) 102
SsiI CCGC 2 cut(s) 189, 191
SspMI CTAG 1 cut(s) 42
TaaI ACNGT 2 cut(s) 49, 137
TasI AATT 1 cut(s) 102
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 2 cut(s) 101, 105
Tru9I TTAA 2 cut(s) 101, 105
TscAI CASTG 1 cut(s) 54
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 1 cut(s) 216
XmnI GAANNNNTTC 1 cut(s) 147
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.