Rmu_co8393587.1_g000001

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8393587.1
OG0023160
Physical Location & Seq
Reverse (-)
309 .. 857
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8393587.1_g000001.1.cds

Sequence Viewer

Length: 549 bp
atgtatgccgagcctttgcacttatgggacagtactactgggtcactcgccgacttcagtactcatttcactttcatggtcgacactggtaatagcgaaatcttcagtgatggagttgcctttttcctatctcccgtgggttatcagtttctgccatacttttcagttggtggtctaggactcttcaacacccacgccagtactcttaatgcttcccaaagccaagttgtaagcatggagtttgatacttggtcggacaacgaatgggatccaccaggacctcatcttaggatcaatatcaaagatatctcttcagttgtttacgccgattggaatgttagcatcatctcggggaagcttggaaatacatggataacttacaacgctactgccaacaaccttactatgttttggactttcactgagaaattcaaccctgcgtttttggggatgaatgcttcttctatcatttaccatgctaacttgagaaaggttcttaccgaatgggttacagtcgatttttctgcttcaagtggagaattctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

182

Amino Acids

20.29

Weight (kDa)

4.48

Isoelectric Point (pI)

25.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023160)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8393587.1_g000001
rosa_samantha Rh4AG189600 Rh4DG188300
rosa_wichuraiana Rw4G016170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 81
AclWI GGATC 3 cut(s) 263, 276, 299
AcsI RAATTY 2 cut(s) 428, 539
AcuI CTGAAG 3 cut(s) 40, 88, 297
AfaI GTAC 3 cut(s) 34, 61, 202
AgsI TTSAA 3 cut(s) 187, 433, 531
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 358
AluI AGCT 1 cut(s) 358
AlwI GGATC 3 cut(s) 263, 276, 299
AlwNI CAGNNNCTG 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 349
ApoI RAATTY 2 cut(s) 428, 539
AspS9I GGNCC 1 cut(s) 278
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 1 cut(s) 278
BamHI GGATCC 1 cut(s) 268
BccI CCATC 1 cut(s) 104
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 1 cut(s) 176
BmcAI AGTACT 3 cut(s) 34, 61, 202
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 276
BmrI ACTGGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 351
BmuI ACTGGG 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 135
Bse1I ACTGG 3 cut(s) 43, 91, 198
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 456
BseJI GATNNNNATC 1 cut(s) 296
BseMII CTCAG 1 cut(s) 414
BseNI ACTGG 3 cut(s) 43, 91, 198
BsiHKCI CYCGRG 1 cut(s) 349
BslFI GGGAC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 41
BsmI GAATGC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 349
Bsp143I GATC 2 cut(s) 268, 291
BspCNI CTCAG 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 3 cut(s) 263, 276, 299
BsrI ACTGG 3 cut(s) 43, 91, 198
BssECI CCNNGG 1 cut(s) 135
BssMI GATC 2 cut(s) 268, 291
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 32, 514
Bst6I CTCTTC 2 cut(s) 188, 316
BstDEI CTNAG 3 cut(s) 287, 423, 546
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 456
BstKTI GATC 2 cut(s) 271, 294
BstMBI GATC 2 cut(s) 268, 291
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 84, 112, 420
CaiI CAGNNNCTG 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 278
Csp6I GTAC 3 cut(s) 33, 60, 201
CviAII CATG 4 cut(s) 76, 235, 369, 476
CviJI RGCY 3 cut(s) 13, 222, 358
CviKI_1 RGCY 3 cut(s) 13, 222, 358
CviQI GTAC 3 cut(s) 33, 60, 201
DdeI CTNAG 3 cut(s) 287, 423, 546
DpnI GATC 2 cut(s) 270, 293
DpnII GATC 2 cut(s) 268, 291
Eam1104I CTCTTC 2 cut(s) 188, 316
EarI CTCTTC 2 cut(s) 188, 316
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 278
Eco57I CTGAAG 3 cut(s) 40, 88, 297
Eco88I CYCGRG 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 278
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 274
EcoRV GATATC 1 cut(s) 307
FaeI CATG 4 cut(s) 79, 238, 372, 479
FaiI YATR 8 cut(s) 6, 25, 77, 157, 236, 370, 407, 477
FaqI GGGAC 1 cut(s) 41
FatI CATG 4 cut(s) 75, 234, 368, 475
FblI GTMKAC 1 cut(s) 81
FokI GGATG 1 cut(s) 463
FspBI CTAG 1 cut(s) 176
Hin1II CATG 4 cut(s) 79, 238, 372, 479
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 82, 322
Hpy188I TCNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 82, 322
HpyCH4III ACNGT 2 cut(s) 32, 514
HpyCH4V TGCA 1 cut(s) 19
HpyF3I CTNAG 3 cut(s) 287, 423, 546
Hsp92II CATG 4 cut(s) 79, 238, 372, 479
Kzo9I GATC 2 cut(s) 268, 291
LpnPI CCDG 6 cut(s) 24, 72, 211, 261, 288, 450
LweI GCATC 1 cut(s) 351
MaeI CTAG 1 cut(s) 176
MaeIII GTNAC 2 cut(s) 42, 508
MalI GATC 2 cut(s) 270, 293
MboI GATC 2 cut(s) 268, 291
MboII GAAGA 4 cut(s) 94, 175, 303, 453
MflI RGATCY 1 cut(s) 268
MluCI AATT 2 cut(s) 428, 539
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 1 cut(s) 291
MseI TTAA 1 cut(s) 207
MslI CAYNNNNRTG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 276
NdeII GATC 2 cut(s) 268, 291
NlaIII CATG 4 cut(s) 79, 238, 372, 479
NlaIV GGNNCC 1 cut(s) 270
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 42
PctI GAATGC 1 cut(s) 460
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
PpuMI RGGWCCY 1 cut(s) 278
Psp5II RGGWCCY 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 278
PspPPI RGGWCCY 1 cut(s) 278
PstNI CAGNNNCTG 1 cut(s) 151
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 3 cut(s) 34, 61, 202
RsaNI GTAC 3 cut(s) 33, 60, 201
RseI CAYNNNNRTG 1 cut(s) 74
SalI GTCGAC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 207
Sau3AI GATC 2 cut(s) 268, 291
Sau96I GGNCC 1 cut(s) 278
ScaI AGTACT 3 cut(s) 34, 61, 202
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 276
SetI ASST 4 cut(s) 283, 360, 402, 495
SfaNI GCATC 1 cut(s) 351
SinI GGWCC 1 cut(s) 278
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 2 cut(s) 428, 539
SspMI CTAG 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 32, 514
TaqI TCGA 2 cut(s) 81, 516
TasI AATT 2 cut(s) 428, 539
TatI WGTACW 3 cut(s) 32, 59, 200
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 91, 112, 427
TseFI GTSAC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 42
TspDTI ATGAA 2 cut(s) 64, 467
TspRI CASTG 3 cut(s) 91, 112, 427
VpaK11BI GGWCC 1 cut(s) 278
XapI RAATTY 2 cut(s) 428, 539
XmiI GTMKAC 1 cut(s) 81
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 3 cut(s) 34, 61, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.