Rh4DG188300

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0023160
Physical Location & Seq
Forward (+)
37135584 .. 37150484
14901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG188300.1

Sequence Viewer

Length: 468 bp
ATGGTTGTATCTGAGGATAATCTCCGTGAAACTACTTCACCCAACTCTAGTCCAAGGTTTATGATGTTTCTGCCATACTTTTCAGTTGGTGGTCTAGGACTCTTCAACACCCACGCCAGTACTCTTAATGCTTCCCAAAGCCAAGTTGTAAGCATGGAGTTTGATACTTGGTCGGACAACGAATGGGATCCACCAGGACCTCATCTTAGGATCAATATCAAAGATATCTCTTCAGTTGTTTACGCCTATTGGAATGTTAGCATCATCTCGGGGAAGCTTGAAAATGCATGGATAACTTACAACGCTACTGCCAACAACCTTACTATGTTTTGGAATTTCACTGAGAAATTCAACCCTGCGTTTTTGGGGATGAATGCTTCTTCTATCATTTACCATGCTAACTTGAGAAAGGTTCTTACCGAATGGGTTACAGTCGATTTTTCTGCTTCAAGTGGAGAATTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

155

Amino Acids

17.48

Weight (kDa)

4.84

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 30 - 153 1.2e-24 Legume lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023160)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8393587.1_g000001
rosa_samantha Rh4AG189600 Rh4DG188300
rosa_wichuraiana Rw4G016170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 182, 195, 218
AcsI RAATTY 3 cut(s) 334, 347, 458
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 121
AgsI TTSAA 4 cut(s) 106, 281, 352, 450
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 277
AluI AGCT 1 cut(s) 277
AlwI GGATC 3 cut(s) 182, 195, 218
Ama87I CYCGRG 1 cut(s) 268
ApoI RAATTY 3 cut(s) 334, 347, 458
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 30
AvaI CYCGRG 1 cut(s) 268
AvaII GGWCC 1 cut(s) 197
BamHI GGATCC 1 cut(s) 187
BcgI CGANNNNNNTGC 2 cut(s) 425, 459
BciT130I CCWGG 1 cut(s) 195
BfaI CTAG 2 cut(s) 48, 95
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 270
BpuEI CTTGAG 1 cut(s) 424
BsaBI GATNNNNATC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 53
Bse1I ACTGG 1 cut(s) 117
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 375
BseJI GATNNNNATC 1 cut(s) 215
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 268
BsmI GAATGC 1 cut(s) 379
BsoBI CYCGRG 1 cut(s) 268
Bsp143I GATC 2 cut(s) 187, 210
BspCNI CTCAG 2 cut(s) 4, 334
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 3 cut(s) 182, 195, 218
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 2 cut(s) 187, 210
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 433
Bst6I CTCTTC 2 cut(s) 107, 235
BstDEI CTNAG 4 cut(s) 12, 206, 342, 465
BstF5I GGATG 1 cut(s) 375
BstKTI GATC 2 cut(s) 190, 213
BstMBI GATC 2 cut(s) 187, 210
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BtsCI GGATG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 120
CviAII CATG 3 cut(s) 154, 288, 395
CviJI RGCY 2 cut(s) 141, 277
CviKI_1 RGCY 2 cut(s) 141, 277
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 4 cut(s) 12, 206, 342, 465
DpnI GATC 2 cut(s) 189, 212
DpnII GATC 2 cut(s) 187, 210
Eam1104I CTCTTC 2 cut(s) 107, 235
EarI CTCTTC 2 cut(s) 107, 235
Eco130I CCWWGG 1 cut(s) 53
Eco32I GATATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 197
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 1 cut(s) 193
EcoRV GATATC 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 3 cut(s) 157, 291, 398
FaiI YATR 6 cut(s) 62, 76, 155, 289, 326, 396
FatI CATG 3 cut(s) 153, 287, 394
FokI GGATG 1 cut(s) 382
FspBI CTAG 2 cut(s) 48, 95
Hin1II CATG 3 cut(s) 157, 291, 398
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 1 cut(s) 99
HphI GGTGA 1 cut(s) 30
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 13, 175
Hpy8I GTNNAC 1 cut(s) 241
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 4 cut(s) 12, 206, 342, 465
Hsp92II CATG 3 cut(s) 157, 291, 398
Kzo9I GATC 2 cut(s) 187, 210
LpnPI CCDG 4 cut(s) 130, 180, 207, 369
LweI GCATC 1 cut(s) 270
MaeI CTAG 2 cut(s) 48, 95
MaeIII GTNAC 1 cut(s) 427
MalI GATC 2 cut(s) 189, 212
MboI GATC 2 cut(s) 187, 210
MboII GAAGA 3 cut(s) 94, 222, 372
MflI RGATCY 1 cut(s) 187
MluCI AATT 3 cut(s) 334, 347, 458
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 2 cut(s) 7, 210
Mph1103I ATGCAT 1 cut(s) 289
MseI TTAA 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 379
MvaI CCWGG 1 cut(s) 195
NdeII GATC 2 cut(s) 187, 210
NlaIII CATG 3 cut(s) 157, 291, 398
NlaIV GGNNCC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 289
PctI GAATGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 197
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SaqAI TTAA 1 cut(s) 126
Sau3AI GATC 2 cut(s) 187, 210
Sau96I GGNCC 1 cut(s) 197
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 195
SetI ASST 5 cut(s) 59, 202, 279, 321, 414
SfaNI GCATC 1 cut(s) 270
SinI GGWCC 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 3 cut(s) 334, 347, 458
SspMI CTAG 2 cut(s) 48, 95
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 433
TaqI TCGA 1 cut(s) 435
TasI AATT 3 cut(s) 334, 347, 458
TatI WGTACW 1 cut(s) 119
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 1 cut(s) 346
TspDTI ATGAA 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 14
TspRI CASTG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 3 cut(s) 334, 347, 458
XspI CTAG 2 cut(s) 48, 95
ZrmI AGTACT 1 cut(s) 121
Zsp2I ATGCAT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.