Rmu_co8401597.1_g000001

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8401597.1
OG0017782
Physical Location & Seq
Reverse (-)
458 .. 1279
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8401597.1_g000001.1.cds

Sequence Viewer

Length: 822 bp
ccatatctagactactatggagcctccactggcattgctctcactgttagcatatcaaattctgatgtgcaaaggttcgctgcaagctttgaagacttaaccaagtggcaccaagatgttttgtattccttacatatcacctttgatgtcaagtacatcactgttggtaacgaagcaatccccggtccctctaccgacgatgttctgaccctaatgaagtctctacaactgctgaacaattatagctcttttggggacatcaaggtgacaacctctgtgggatcaagtgttttgggggattggtatctaccgtctagtggggagttcaaaccaaatgctagcagagccatgactgacatacttggatttctatcagcgtctcaagcacctctcatgataaatgtgtacccctactatgcatatgcagctgatccggccaatgtaccgctagattatgcactcttaaacgccacctaccctatggttcatgatggctcattggaatacagtaacttgtttgatgcaatggtggactccttttactctgccatggagaaagttgactactcagacgtgagcattgtggtatccgagagtgggtggcctcgtgatgggaattacaacttcaccacaccggaacttgcagctacatacaacagtaatttcctgctacgcatcagctcagaggtgggaacacccaagagacctggtgcttctgttaagggatacatatatgagctgtttgatggtgaaagccctcactttggactcttcgatgagacctttgaacctatctatcctctgttccagtgttccttctag

Protein Analysis

273

Amino Acids

30.21

Weight (kDa)

4.26

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017782)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0150161
rosa_laevigata RLG00000020472
rosa_multiflora Rmu_co8401597.1_g000001 Rmu_sc0015510.1_g000001 Rmu_ssc0000020.1_g000012
rosa_roxburghii Rroxscaffold_2G00097390
rosa_rugosa Rorug02G0419400
rosa_samantha Rh2AG478300 Rh2BG490900 Rh2CG464500 Rh2DG499700
rosa_wichuraiana Rw2G039050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AciI CCGC 1 cut(s) 446
AclWI GGATC 2 cut(s) 289, 425
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 3 cut(s) 155, 407, 444
AfiI CCNNNNNNNGG 4 cut(s) 317, 597, 611, 764
AgsI TTSAA 3 cut(s) 92, 328, 788
AjiI CACGTC 1 cut(s) 574
AjnI CCWGG 1 cut(s) 706
AluBI AGCT 6 cut(s) 87, 246, 428, 647, 681, 739
AluI AGCT 6 cut(s) 87, 246, 428, 647, 681, 739
Alw26I GTCTC 4 cut(s) 225, 384, 697, 773
AlwI GGATC 2 cut(s) 289, 425
AoxI GGCC 2 cut(s) 435, 602
ApeKI GCWGC 3 cut(s) 80, 425, 644
ApoI RAATTY 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 185
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 4 cut(s) 130, 277, 619, 761
AsuNHI GCTAGC 1 cut(s) 338
AvaII GGWCC 1 cut(s) 185
BanI GGYRCC 1 cut(s) 108
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 67, 437, 656
BccI CCATC 3 cut(s) 485, 605, 740
BciT130I CCWGG 1 cut(s) 708
BciVI GTATCC 2 cut(s) 598, 719
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 4 cut(s) 225, 384, 697, 773
BfaI CTAG 5 cut(s) 8, 315, 339, 449, 820
BfuI GTATCC 2 cut(s) 598, 719
BisI GCNGC 3 cut(s) 81, 426, 645
BlsI GCNGC 3 cut(s) 82, 427, 646
Bme1390I CCNGG 2 cut(s) 183, 708
Bme18I GGWCC 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 3 cut(s) 22, 110, 187
BmrFI CCNGG 2 cut(s) 183, 708
BmsI GCATC 2 cut(s) 511, 684
BmtI GCTAGC 1 cut(s) 342
BpiI GAAGAC 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 366
BpuMI CCSGG 1 cut(s) 183
BsaBI GATNNNNATC 2 cut(s) 303, 370
BsaI GGTCTC 2 cut(s) 697, 773
BsaJI CCNNGG 2 cut(s) 181, 549
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 4 cut(s) 317, 597, 611, 764
Bse1I ACTGG 2 cut(s) 34, 808
Bse3DI GCAATG 2 cut(s) 33, 531
Bse8I GATNNNNATC 2 cut(s) 303, 370
BseBI CCWGG 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 181, 549
BseJI GATNNNNATC 2 cut(s) 303, 370
BseLI CCNNNNNNNGG 4 cut(s) 317, 597, 611, 764
BseMI GCAATG 2 cut(s) 33, 531
BseMII CTCAG 2 cut(s) 582, 696
BseNI ACTGG 2 cut(s) 34, 808
BseXI GCAGC 3 cut(s) 67, 437, 656
BshFI GGCC 2 cut(s) 437, 604
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 3 cut(s) 183, 434, 635
BslFI GGGAC 2 cut(s) 171, 269
BslI CCNNNNNNNGG 4 cut(s) 317, 597, 611, 764
BsmAI GTCTC 4 cut(s) 225, 384, 697, 773
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 2 cut(s) 171, 269
BsnI GGCC 2 cut(s) 437, 604
Bso31I GGTCTC 2 cut(s) 697, 773
Bsp143I GATC 2 cut(s) 281, 430
Bsp19I CCATGG 1 cut(s) 549
BspACI CCGC 1 cut(s) 446
BspANI GGCC 2 cut(s) 437, 604
BspCNI CTCAG 2 cut(s) 581, 695
BspHI TCATGA 2 cut(s) 393, 487
BspLI GGNNCC 3 cut(s) 22, 110, 187
BspOI GCTAGC 1 cut(s) 342
BspPI GGATC 2 cut(s) 289, 425
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 2 cut(s) 697, 773
BsrDI GCAATG 2 cut(s) 33, 531
BsrI ACTGG 2 cut(s) 34, 808
BssECI CCNNGG 2 cut(s) 181, 549
BssMI GATC 2 cut(s) 281, 430
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 5 cut(s) 46, 163, 312, 509, 659
Bst6I CTCTTC 1 cut(s) 776
BstC8I GCNNGC 2 cut(s) 85, 340
BstDEI CTNAG 2 cut(s) 568, 682
BstDSI CCRYGG 1 cut(s) 549
BstKTI GATC 2 cut(s) 284, 433
BstMAI GTCTC 4 cut(s) 225, 384, 697, 773
BstMBI GATC 2 cut(s) 281, 430
BstMWI GCNNNNNNNGC 4 cut(s) 344, 383, 425, 434
BstNI CCWGG 1 cut(s) 708
BstSCI CCNGG 2 cut(s) 181, 706
BstV1I GCAGC 3 cut(s) 67, 437, 656
BstV2I GAAGAC 1 cut(s) 99
BsuI GTATCC 2 cut(s) 598, 719
BsuRI GGCC 2 cut(s) 437, 604
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 574
BtsIMutI CAGTG 4 cut(s) 27, 42, 159, 815
Cac8I GCNNGC 2 cut(s) 85, 340
CciI TCATGA 2 cut(s) 393, 487
Cfr13I GGNCC 1 cut(s) 185
CseI GACGC 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 3 cut(s) 154, 406, 443
CspCI CAANNNNNGTGG 4 cut(s) 16, 51, 258, 293
CviAII CATG 4 cut(s) 349, 394, 488, 550
CviQI GTAC 3 cut(s) 154, 406, 443
DdeI CTNAG 2 cut(s) 568, 682
DpnI GATC 2 cut(s) 283, 432
DpnII GATC 2 cut(s) 281, 430
EaeI YGGCCR 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 776
EarI CTCTTC 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 549
Eco31I GGTCTC 2 cut(s) 697, 773
Eco47I GGWCC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 706
EcoT14I CCWWGG 1 cut(s) 549
EcoT22I ATGCAT 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 549
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 4 cut(s) 352, 397, 491, 553
FaqI GGGAC 2 cut(s) 171, 269
FatI CATG 4 cut(s) 348, 393, 487, 549
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 3 cut(s) 81, 426, 645
Fsp4HI GCNGC 3 cut(s) 81, 426, 645
FspBI CTAG 5 cut(s) 8, 315, 339, 449, 820
GluI GCNGC 3 cut(s) 81, 426, 645
HaeIII GGCC 2 cut(s) 437, 604
HapII CCGG 3 cut(s) 183, 434, 635
HgaI GACGC 1 cut(s) 366
Hin1II CATG 4 cut(s) 352, 397, 491, 553
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 2 cut(s) 533, 768
HpaII CCGG 3 cut(s) 183, 434, 635
HphI GGTGA 4 cut(s) 130, 277, 619, 761
Hpy166II GTNNAC 3 cut(s) 406, 532, 562
Hpy188I TCNGA 5 cut(s) 64, 207, 571, 592, 685
Hpy188III TCNNGA 4 cut(s) 8, 394, 488, 608
Hpy8I GTNNAC 3 cut(s) 406, 532, 562
Hpy99I CGWCG 1 cut(s) 200
HpyCH4III ACNGT 5 cut(s) 46, 163, 312, 509, 659
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 7 cut(s) 70, 83, 419, 425, 458, 524, 644
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 383, 425, 434
HpyF3I CTNAG 2 cut(s) 568, 682
HpySE526I ACGT 1 cut(s) 573
Hsp92II CATG 4 cut(s) 352, 397, 491, 553
Kzo9I GATC 2 cut(s) 281, 430
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 7 cut(s) 15, 196, 447, 648, 680, 693, 720
Lsp1109I GCAGC 3 cut(s) 67, 437, 656
LweI GCATC 2 cut(s) 511, 684
MabI ACCWGGT 1 cut(s) 706
MaeI CTAG 5 cut(s) 8, 315, 339, 449, 820
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 167, 265, 509
MalI GATC 2 cut(s) 283, 432
MboI GATC 2 cut(s) 281, 430
MboII GAAGA 2 cut(s) 104, 763
MluCI AATT 4 cut(s) 58, 238, 616, 661
MlyI GAGTC 2 cut(s) 527, 762
MnlI CCTC 8 cut(s) 34, 199, 283, 399, 615, 679, 768, 810
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 3 cut(s) 98, 464, 720
MslI CAYNNNNRTG 2 cut(s) 114, 263
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 3 cut(s) 183, 434, 635
MspR9I CCNGG 2 cut(s) 183, 708
MvaI CCWGG 1 cut(s) 708
MwoI GCNNNNNNNGC 4 cut(s) 344, 383, 425, 434
NciI CCSGG 1 cut(s) 183
NcoI CCATGG 1 cut(s) 549
NdeI CATATG 1 cut(s) 421
NdeII GATC 2 cut(s) 281, 430
NheI GCTAGC 1 cut(s) 338
NlaIII CATG 4 cut(s) 352, 397, 491, 553
NlaIV GGNNCC 3 cut(s) 22, 110, 187
NmuCI GTSAC 1 cut(s) 265
NsiI ATGCAT 1 cut(s) 421
PagI TCATGA 2 cut(s) 393, 487
PkrI GCNGC 3 cut(s) 82, 427, 646
PleI GAGTC 2 cut(s) 527, 762
PpsI GAGTC 2 cut(s) 527, 762
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 3 cut(s) 22, 110, 187
PspPI GGNCC 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 3 cut(s) 155, 407, 444
RsaNI GTAC 3 cut(s) 154, 406, 443
RseI CAYNNNNRTG 2 cut(s) 114, 263
SaqAI TTAA 3 cut(s) 98, 464, 720
SatI GCNGC 3 cut(s) 81, 426, 645
Sau3AI GATC 2 cut(s) 281, 430
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 2 cut(s) 527, 762
ScrFI CCNGG 2 cut(s) 183, 708
SexAI ACCWGGT 1 cut(s) 706
SfaNI GCATC 2 cut(s) 511, 684
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 2 cut(s) 114, 263
SmlI CTYRAG 1 cut(s) 381
SmoI CTYRAG 1 cut(s) 381
Sse9I AATT 4 cut(s) 58, 238, 616, 661
SsiI CCGC 1 cut(s) 446
SspMI CTAG 5 cut(s) 8, 315, 339, 449, 820
StyD4I CCNGG 2 cut(s) 181, 706
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 5 cut(s) 46, 163, 312, 509, 659
TaiI ACGT 1 cut(s) 576
TaqI TCGA 1 cut(s) 774
TasI AATT 4 cut(s) 58, 238, 616, 661
TatI WGTACW 1 cut(s) 153
Tru1I TTAA 3 cut(s) 98, 464, 720
Tru9I TTAA 3 cut(s) 98, 464, 720
TscAI CASTG 4 cut(s) 34, 49, 166, 815
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 3 cut(s) 80, 425, 644
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 230, 476
TspRI CASTG 4 cut(s) 34, 49, 166, 815
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 58
XbaI TCTAGA 1 cut(s) 7
XcmI CCANNNNNNNNNTGG 1 cut(s) 478
XspI CTAG 5 cut(s) 8, 315, 339, 449, 820
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.