Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000020.1

Orthogroup ID

OG0017782

Physical Location & Seq

Genomic Coordinates Reverse (-)

52081 .. 52986

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000020.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggctggacgactggggctacttgcttgggtgatcttcatcctgtccgcttcagcaatcgttaacaacaactcagtccttcttcaagctgcagctctttccaatgacatcggcgcaaactatcatatccatgacagtactggtgctagcggtaatttttccaaggtgttcgatattttggtcaaatgtggcataagaaatttgagggtcttttcagatgagatcaatgctccatatctagactactatggagcctccactggcattgctctcactgttagcatatcaaattctgatgtgcaaaggttcgctgcaagctttgaagacttaaccaagtggcaccaagatgttttgtattccttacatatcacctttgatgtcaagtacatcactgttggtaacgaagcaatccccggtccctctaccgacgatgttctgaccctaatgaagtctctacaactgctgaacaattatagctcttttggggacatcaaggtgacaacctctgtgggatcaagtgttttgggggattggtatctaccgtctagtggggagttcaaaccaaatgctagcagagccatgactgacatacttggatttctatcagcgtctcaagcacctctcatgataaatgtgtacccctactatgcatatgcagctgatccggccaatgtgccgctagattatgcactcttaaacgccacctaccctatggttcatgatggctcattggaatacagtaacttgtttgatgcaatggtggactccttttactctgccatggagaaagttgactactcagacgtgagcattgtggtatccgagagtgggtggcctcgtgatgggaattacaacttcaccacaccggaacttgcagctacatacaacagtaatttcctgctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

301

Amino Acids

32.84

Weight (kDa)

4.4

Isoelectric Point (pI)

29.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150161
rosa_laevigata	RLG00000020472
rosa_multiflora	Rmu_co8401597.1_g000001 Rmu_sc0015510.1_g000001 Rmu_ssc0000020.1_g000012
rosa_roxburghii	Rroxscaffold_2G00097390
rosa_rugosa	Rorug02G0419400
rosa_samantha	Rh2AG478300 Rh2BG490900 Rh2CG464500 Rh2DG499700
rosa_wichuraiana	Rw2G039050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	339
AciI	CCGC	3 cut(s)	48, 150, 677
AclWI	GGATC	2 cut(s)	520, 656
AcoI	YGGCCR	1 cut(s)	666
AcsI	RAATTY	2 cut(s)	199, 289
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	3 cut(s)	139, 386, 638
AfiI	CCNNNNNNNGG	3 cut(s)	548, 828, 842
AgsI	TTSAA	3 cut(s)	86, 323, 559
AjiI	CACGTC	1 cut(s)	805
AluBI	AGCT	6 cut(s)	89, 95, 318, 477, 659, 878
AluI	AGCT	6 cut(s)	89, 95, 318, 477, 659, 878
Alw26I	GTCTC	2 cut(s)	456, 615
AlwI	GGATC	2 cut(s)	520, 656
AoxI	GGCC	2 cut(s)	666, 833
ApeKI	GCWGC	5 cut(s)	89, 92, 311, 656, 875
ApoI	RAATTY	2 cut(s)	199, 289
AspLEI	GCGC	1 cut(s)	116
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	414
AsuHPI	GGTGA	4 cut(s)	43, 361, 508, 850
AsuNHI	GCTAGC	2 cut(s)	146, 569
AvaII	GGWCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	339
BauI	CACGAG	1 cut(s)	837
BbsI	GAAGAC	1 cut(s)	330
BbvI	GCAGC	5 cut(s)	76, 104, 298, 668, 887
BccI	CCATC	2 cut(s)	716, 836
BciVI	GTATCC	1 cut(s)	829
BcnI	CCSGG	1 cut(s)	414
BcoDI	GTCTC	2 cut(s)	456, 615
BfaI	CTAG	5 cut(s)	147, 239, 546, 570, 680
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	6 cut(s)	90, 93, 312, 657, 677, 876
BlsI	GCNGC	6 cut(s)	91, 94, 313, 658, 678, 877
BmcAI	AGTACT	1 cut(s)	139
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	805
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	3 cut(s)	253, 341, 418
BmrFI	CCNGG	1 cut(s)	414
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	742
BmtI	GCTAGC	2 cut(s)	150, 573
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	597
BpuMI	CCSGG	1 cut(s)	414
BsaBI	GATNNNNATC	3 cut(s)	38, 534, 601
BsaJI	CCNNGG	3 cut(s)	162, 412, 780
BsaWI	WCCGGW	1 cut(s)	865
Bsc4I	CCNNNNNNNGG	3 cut(s)	548, 828, 842
Bse1I	ACTGG	3 cut(s)	18, 145, 265
Bse3DI	GCAATG	2 cut(s)	264, 762
Bse8I	GATNNNNATC	3 cut(s)	38, 534, 601
BseDI	CCNNGG	3 cut(s)	162, 412, 780
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	3 cut(s)	38, 534, 601
BseLI	CCNNNNNNNGG	3 cut(s)	548, 828, 842
BseMI	GCAATG	2 cut(s)	264, 762
BseMII	CTCAG	2 cut(s)	87, 813
BseNI	ACTGG	3 cut(s)	18, 145, 265
BseXI	GCAGC	5 cut(s)	76, 104, 298, 668, 887
BshFI	GGCC	2 cut(s)	668, 835
BshNI	GGYRCC	1 cut(s)	339
BsiSI	CCGG	3 cut(s)	414, 665, 866
BslFI	GGGAC	2 cut(s)	402, 500
BslI	CCNNNNNNNGG	3 cut(s)	548, 828, 842
BsmAI	GTCTC	2 cut(s)	456, 615
BsmBI	CGTCTC	1 cut(s)	615
BsmFI	GGGAC	2 cut(s)	402, 500
BsnI	GGCC	2 cut(s)	668, 835
Bsp143I	GATC	4 cut(s)	33, 222, 512, 661
Bsp19I	CCATGG	1 cut(s)	780
BspACI	CCGC	3 cut(s)	48, 150, 677
BspANI	GGCC	2 cut(s)	668, 835
BspCNI	CTCAG	2 cut(s)	86, 812
BspHI	TCATGA	2 cut(s)	624, 718
BspLI	GGNNCC	3 cut(s)	253, 341, 418
BspMAI	CTGCAG	1 cut(s)	94
BspOI	GCTAGC	2 cut(s)	150, 573
BspPI	GGATC	2 cut(s)	520, 656
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	264, 762
BsrI	ACTGG	3 cut(s)	18, 145, 265
BssECI	CCNNGG	3 cut(s)	162, 412, 780
BssMI	GATC	4 cut(s)	33, 222, 512, 661
BssSI	CACGAG	1 cut(s)	837
BssT1I	CCWWGG	2 cut(s)	162, 780
Bst2BI	CACGAG	1 cut(s)	837
Bst4CI	ACNGT	6 cut(s)	137, 277, 394, 543, 740, 890
BstC8I	GCNNGC	3 cut(s)	148, 316, 571
BstDEI	CTNAG	2 cut(s)	73, 799
BstDSI	CCRYGG	1 cut(s)	780
BstF5I	GGATG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	116
BstKTI	GATC	4 cut(s)	36, 225, 515, 664
BstMAI	GTCTC	2 cut(s)	456, 615
BstMBI	GATC	4 cut(s)	33, 222, 512, 661
BstMWI	GCNNNNNNNGC	4 cut(s)	575, 614, 656, 665
BstSCI	CCNGG	1 cut(s)	412
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	5 cut(s)	76, 104, 298, 668, 887
BstV2I	GAAGAC	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	2 cut(s)	668, 835
BtgI	CCRYGG	1 cut(s)	780
BtrI	CACGTC	1 cut(s)	805
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	258, 273, 390
Cac8I	GCNNGC	3 cut(s)	148, 316, 571
CciI	TCATGA	2 cut(s)	624, 718
CfoI	GCGC	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	416
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	3 cut(s)	138, 385, 637
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 489, 524
CviAII	CATG	5 cut(s)	131, 580, 625, 719, 781
CviQI	GTAC	3 cut(s)	138, 385, 637
DdeI	CTNAG	2 cut(s)	73, 799
DpnI	GATC	4 cut(s)	35, 224, 514, 663
DpnII	GATC	4 cut(s)	33, 222, 512, 661
EaeI	YGGCCR	1 cut(s)	666
Eco130I	CCWWGG	2 cut(s)	162, 780
Eco47I	GGWCC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	36
EcoT14I	CCWWGG	2 cut(s)	162, 780
EcoT22I	ATGCAT	1 cut(s)	652
ErhI	CCWWGG	2 cut(s)	162, 780
Esp3I	CGTCTC	1 cut(s)	615
FaeI	CATG	5 cut(s)	134, 583, 628, 722, 784
FaqI	GGGAC	2 cut(s)	402, 500
FatI	CATG	5 cut(s)	130, 579, 624, 718, 780
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	6 cut(s)	90, 93, 312, 657, 677, 876
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	6 cut(s)	90, 93, 312, 657, 677, 876
FspBI	CTAG	5 cut(s)	147, 239, 546, 570, 680
GlaI	GCGC	1 cut(s)	115
GluI	GCNGC	6 cut(s)	90, 93, 312, 657, 677, 876
HaeIII	GGCC	2 cut(s)	668, 835
HapII	CCGG	3 cut(s)	414, 665, 866
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	1 cut(s)	116
Hin1II	CATG	5 cut(s)	134, 583, 628, 722, 784
Hin6I	GCGC	1 cut(s)	114
HinP1I	GCGC	1 cut(s)	114
HincII	GTYRAC	2 cut(s)	64, 793
HindII	GTYRAC	2 cut(s)	64, 793
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	1 cut(s)	764
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	3 cut(s)	414, 665, 866
HphI	GGTGA	4 cut(s)	43, 361, 508, 850
Hpy166II	GTNNAC	4 cut(s)	64, 637, 763, 793
Hpy188I	TCNGA	5 cut(s)	217, 295, 438, 802, 823
Hpy188III	TCNNGA	4 cut(s)	239, 625, 719, 839
Hpy8I	GTNNAC	4 cut(s)	64, 637, 763, 793
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	6 cut(s)	137, 277, 394, 543, 740, 890
HpyCH4IV	ACGT	1 cut(s)	804
HpyCH4V	TGCA	8 cut(s)	92, 301, 314, 650, 656, 689, 755, 875
HpyF10VI	GCNNNNNNNGC	4 cut(s)	575, 614, 656, 665
HpyF3I	CTNAG	2 cut(s)	73, 799
HpySE526I	ACGT	1 cut(s)	804
Hsp92II	CATG	5 cut(s)	134, 583, 628, 722, 784
HspAI	GCGC	1 cut(s)	114
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	33, 222, 512, 661
LmnI	GCTCC	2 cut(s)	235, 251
LpnPI	CCDG	6 cut(s)	56, 126, 246, 427, 678, 879
Lsp1109I	GCAGC	5 cut(s)	76, 104, 298, 668, 887
LweI	GCATC	1 cut(s)	742
MaeI	CTAG	5 cut(s)	147, 239, 546, 570, 680
MaeII	ACGT	1 cut(s)	804
MaeIII	GTNAC	3 cut(s)	398, 496, 740
MalI	GATC	4 cut(s)	35, 224, 514, 663
MboI	GATC	4 cut(s)	33, 222, 512, 661
MboII	GAAGA	3 cut(s)	28, 74, 335
MluCI	AATT	6 cut(s)	154, 199, 289, 469, 847, 892
MlyI	GAGTC	1 cut(s)	758
MnlI	CCTC	6 cut(s)	198, 265, 430, 514, 630, 846
Mph1103I	ATGCAT	1 cut(s)	652
MseI	TTAA	3 cut(s)	63, 329, 695
MslI	CAYNNNNRTG	3 cut(s)	129, 345, 494
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	3 cut(s)	414, 665, 866
MspR9I	CCNGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	4 cut(s)	575, 614, 656, 665
NciI	CCSGG	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	780
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	4 cut(s)	33, 222, 512, 661
NheI	GCTAGC	2 cut(s)	146, 569
NlaIII	CATG	5 cut(s)	134, 583, 628, 722, 784
NlaIV	GGNNCC	3 cut(s)	253, 341, 418
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	652
PagI	TCATGA	2 cut(s)	624, 718
PkrI	GCNGC	6 cut(s)	91, 94, 313, 658, 678, 877
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PspN4I	GGNNCC	3 cut(s)	253, 341, 418
PspPI	GGNCC	1 cut(s)	416
PstI	CTGCAG	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	139, 386, 638
RsaNI	GTAC	3 cut(s)	138, 385, 637
RseI	CAYNNNNRTG	3 cut(s)	129, 345, 494
SaqAI	TTAA	3 cut(s)	63, 329, 695
SatI	GCNGC	6 cut(s)	90, 93, 312, 657, 677, 876
Sau3AI	GATC	4 cut(s)	33, 222, 512, 661
Sau96I	GGNCC	1 cut(s)	416
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	742
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	3 cut(s)	129, 345, 494
SmlI	CTYRAG	1 cut(s)	612
SmoI	CTYRAG	1 cut(s)	612
Sse9I	AATT	6 cut(s)	154, 199, 289, 469, 847, 892
SsiI	CCGC	3 cut(s)	48, 150, 677
SspMI	CTAG	5 cut(s)	147, 239, 546, 570, 680
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	2 cut(s)	162, 780
TaaI	ACNGT	6 cut(s)	137, 277, 394, 543, 740, 890
TaiI	ACGT	1 cut(s)	807
TaqI	TCGA	1 cut(s)	171
TasI	AATT	6 cut(s)	154, 199, 289, 469, 847, 892
TatI	WGTACW	2 cut(s)	137, 384
TauI	GCSGC	1 cut(s)	679
Tru1I	TTAA	3 cut(s)	63, 329, 695
Tru9I	TTAA	3 cut(s)	63, 329, 695
TscAI	CASTG	3 cut(s)	265, 280, 397
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	5 cut(s)	89, 92, 311, 656, 875
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	3 cut(s)	28, 461, 707
TspRI	CASTG	3 cut(s)	265, 280, 397
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	2 cut(s)	199, 289
XbaI	TCTAGA	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	2 cut(s)	137, 709
XspI	CTAG	5 cut(s)	147, 239, 546, 570, 680
ZrmI	AGTACT	1 cut(s)	139
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.