Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015510.1

Orthogroup ID

OG0017782

Physical Location & Seq

Genomic Coordinates Forward (+)

3503 .. 4552

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015510.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

atggctggacgactggggctacttgcttgggtgatcttcatcctgtccgcttcagcaatctttaacaacaactcagtccttcaagctgcagctcttaccaatgacatcggcgcaaactatcatatccatgacagtactggtgctagcggtaatttttgcaaggtgttcgagattttggtcaaatgtggcataagaaatgtgagggtcttttcagatgagatcaatgccccatatctagactactatggagcctccactggcattgctctcactgttagcatatcaaattctgatgtgcaaaggttcgctgcaagctttgaagacttaaccaagtggcaccaagatgttttgtattccttacatatcacctttgatgtcaagtacatcactgttggtaacgaagcaatccccggtccctctaccgacgatgttctgaccctaatgaagtctctacaactgctgaacaattatagctcttttggggacatcaaggtgacaacctctgtgggatcaagtgttttgggggattggtatctaccgtctagtggggagttcaaaccaaatgctagcagagccatgactgacatacttggatttctatcagcgtctcaagcacctctcatgataaatgtgtacccctactatgcatatgcagctgatccggccaatgtaccgctagattatgcactcttaaacgccacctaccctatggttcatgatggctcattggaatacagtaacttgtttgatgcaatggtggactccttttactctgccatggagaaagttgactactcagacgtgagcattgtggtatccgagagtgggtggcctcgtgatgggaattacaacttcaccacaccggaacttgcagctacatacaacagtaatttcctgctacgcatcagctcagaggtgggaacacccaagagacctggtgcttctgttaagggatacatatatgagctgtttgatggtgaaagccctcactttggactcttcgatgagacctttgaacctatctatcctctgttccagtgttccttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004338 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0008422 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

349

Amino Acids

38.34

Weight (kDa)

4.48

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017782)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150161
rosa_laevigata	RLG00000020472
rosa_multiflora	Rmu_co8401597.1_g000001 Rmu_sc0015510.1_g000001 Rmu_ssc0000020.1_g000012
rosa_roxburghii	Rroxscaffold_2G00097390
rosa_rugosa	Rorug02G0419400
rosa_samantha	Rh2AG478300 Rh2BG490900 Rh2CG464500 Rh2DG499700
rosa_wichuraiana	Rw2G039050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	336
AciI	CCGC	3 cut(s)	48, 147, 674
AclWI	GGATC	2 cut(s)	517, 653
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	36
AfaI	GTAC	4 cut(s)	136, 383, 635, 672
AfiI	CCNNNNNNNGG	4 cut(s)	545, 825, 839, 992
AgsI	TTSAA	4 cut(s)	83, 320, 556, 1016
AjiI	CACGTC	1 cut(s)	802
AjnI	CCWGG	1 cut(s)	934
AluBI	AGCT	8 cut(s)	86, 92, 315, 474, 656, 875, 909, 967
AluI	AGCT	8 cut(s)	86, 92, 315, 474, 656, 875, 909, 967
Alw26I	GTCTC	4 cut(s)	453, 612, 925, 1001
AlwI	GGATC	2 cut(s)	517, 653
AoxI	GGCC	2 cut(s)	663, 830
ApeKI	GCWGC	5 cut(s)	86, 89, 308, 653, 872
ApoI	RAATTY	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	5 cut(s)	43, 358, 505, 847, 989
AsuNHI	GCTAGC	2 cut(s)	143, 566
AvaII	GGWCC	1 cut(s)	413
BanI	GGYRCC	1 cut(s)	336
BauI	CACGAG	1 cut(s)	834
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	5 cut(s)	73, 101, 295, 665, 884
BccI	CCATC	3 cut(s)	713, 833, 968
BcgI	CGANNNNNNTGC	2 cut(s)	148, 182
BciT130I	CCWGG	1 cut(s)	936
BciVI	GTATCC	2 cut(s)	826, 947
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	4 cut(s)	453, 612, 925, 1001
BfaI	CTAG	6 cut(s)	144, 236, 543, 567, 677, 1048
BfmI	CTRYAG	1 cut(s)	87
BfuI	GTATCC	2 cut(s)	826, 947
BisI	GCNGC	5 cut(s)	87, 90, 309, 654, 873
BlsI	GCNGC	5 cut(s)	88, 91, 310, 655, 874
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	411, 936
Bme18I	GGWCC	1 cut(s)	413
BmgBI	CACGTC	1 cut(s)	802
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	3 cut(s)	250, 338, 415
BmrFI	CCNGG	2 cut(s)	411, 936
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	2 cut(s)	739, 912
BmtI	GCTAGC	2 cut(s)	147, 570
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	594
BpuMI	CCSGG	1 cut(s)	411
BsaBI	GATNNNNATC	3 cut(s)	38, 531, 598
BsaI	GGTCTC	2 cut(s)	925, 1001
BsaJI	CCNNGG	2 cut(s)	409, 777
BsaWI	WCCGGW	1 cut(s)	862
Bsc4I	CCNNNNNNNGG	4 cut(s)	545, 825, 839, 992
Bse1I	ACTGG	4 cut(s)	18, 142, 262, 1036
Bse3DI	GCAATG	2 cut(s)	261, 759
Bse8I	GATNNNNATC	3 cut(s)	38, 531, 598
BseBI	CCWGG	1 cut(s)	936
BseDI	CCNNGG	2 cut(s)	409, 777
BseGI	GGATG	1 cut(s)	39
BseJI	GATNNNNATC	3 cut(s)	38, 531, 598
BseLI	CCNNNNNNNGG	4 cut(s)	545, 825, 839, 992
BseMI	GCAATG	2 cut(s)	261, 759
BseMII	CTCAG	3 cut(s)	87, 810, 924
BseNI	ACTGG	4 cut(s)	18, 142, 262, 1036
BseXI	GCAGC	5 cut(s)	73, 101, 295, 665, 884
BshFI	GGCC	2 cut(s)	665, 832
BshNI	GGYRCC	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	411, 662, 863
BslFI	GGGAC	2 cut(s)	399, 497
BslI	CCNNNNNNNGG	4 cut(s)	545, 825, 839, 992
BsmAI	GTCTC	4 cut(s)	453, 612, 925, 1001
BsmBI	CGTCTC	1 cut(s)	612
BsmFI	GGGAC	2 cut(s)	399, 497
BsnI	GGCC	2 cut(s)	665, 832
Bso31I	GGTCTC	2 cut(s)	925, 1001
Bsp143I	GATC	4 cut(s)	33, 219, 509, 658
Bsp19I	CCATGG	1 cut(s)	777
BspACI	CCGC	3 cut(s)	48, 147, 674
BspANI	GGCC	2 cut(s)	665, 832
BspCNI	CTCAG	3 cut(s)	86, 809, 923
BspHI	TCATGA	2 cut(s)	621, 715
BspLI	GGNNCC	3 cut(s)	250, 338, 415
BspMAI	CTGCAG	1 cut(s)	91
BspOI	GCTAGC	2 cut(s)	147, 570
BspPI	GGATC	2 cut(s)	517, 653
BspT107I	GGYRCC	1 cut(s)	336
BspTNI	GGTCTC	2 cut(s)	925, 1001
BsrDI	GCAATG	2 cut(s)	261, 759
BsrI	ACTGG	4 cut(s)	18, 142, 262, 1036
BssECI	CCNNGG	2 cut(s)	409, 777
BssMI	GATC	4 cut(s)	33, 219, 509, 658
BssSI	CACGAG	1 cut(s)	834
BssT1I	CCWWGG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	834
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	6 cut(s)	134, 274, 391, 540, 737, 887
Bst6I	CTCTTC	1 cut(s)	1004
BstC8I	GCNNGC	3 cut(s)	145, 313, 568
BstDEI	CTNAG	3 cut(s)	73, 796, 910
BstDSI	CCRYGG	1 cut(s)	777
BstF5I	GGATG	1 cut(s)	39
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	4 cut(s)	36, 222, 512, 661
BstMAI	GTCTC	4 cut(s)	453, 612, 925, 1001
BstMBI	GATC	4 cut(s)	33, 219, 509, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	572, 611, 653, 662
BstNI	CCWGG	1 cut(s)	936
BstSCI	CCNGG	2 cut(s)	409, 934
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	73, 101, 295, 665, 884
BstV2I	GAAGAC	1 cut(s)	327
BsuI	GTATCC	2 cut(s)	826, 947
BsuRI	GGCC	2 cut(s)	665, 832
BtgI	CCRYGG	1 cut(s)	777
BtrI	CACGTC	1 cut(s)	802
BtsCI	GGATG	1 cut(s)	39
BtsIMutI	CAGTG	4 cut(s)	255, 270, 387, 1043
Cac8I	GCNNGC	3 cut(s)	145, 313, 568
CciI	TCATGA	2 cut(s)	621, 715
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	413
CseI	GACGC	1 cut(s)	594
CsiI	ACCWGGT	1 cut(s)	934
Csp6I	GTAC	4 cut(s)	135, 382, 634, 671
CspCI	CAANNNNNGTGG	4 cut(s)	244, 279, 486, 521
CviAII	CATG	5 cut(s)	128, 577, 622, 716, 778
CviQI	GTAC	4 cut(s)	135, 382, 634, 671
DdeI	CTNAG	3 cut(s)	73, 796, 910
DpnI	GATC	4 cut(s)	35, 221, 511, 660
DpnII	GATC	4 cut(s)	33, 219, 509, 658
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	1004
EarI	CTCTTC	1 cut(s)	1004
Eco130I	CCWWGG	1 cut(s)	777
Eco31I	GGTCTC	2 cut(s)	925, 1001
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	934
EcoT14I	CCWWGG	1 cut(s)	777
EcoT22I	ATGCAT	1 cut(s)	649
ErhI	CCWWGG	1 cut(s)	777
Esp3I	CGTCTC	1 cut(s)	612
FaeI	CATG	5 cut(s)	131, 580, 625, 719, 781
FaqI	GGGAC	2 cut(s)	399, 497
FatI	CATG	5 cut(s)	127, 576, 621, 715, 777
FauNDI	CATATG	1 cut(s)	649
Fnu4HI	GCNGC	5 cut(s)	87, 90, 309, 654, 873
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	87, 90, 309, 654, 873
FspBI	CTAG	6 cut(s)	144, 236, 543, 567, 677, 1048
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	5 cut(s)	87, 90, 309, 654, 873
HaeIII	GGCC	2 cut(s)	665, 832
HapII	CCGG	3 cut(s)	411, 662, 863
HgaI	GACGC	1 cut(s)	594
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	5 cut(s)	131, 580, 625, 719, 781
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	1 cut(s)	313
HinfI	GANTC	2 cut(s)	761, 996
HpaII	CCGG	3 cut(s)	411, 662, 863
HphI	GGTGA	5 cut(s)	43, 358, 505, 847, 989
Hpy166II	GTNNAC	3 cut(s)	634, 760, 790
Hpy188I	TCNGA	6 cut(s)	214, 292, 435, 799, 820, 913
Hpy188III	TCNNGA	5 cut(s)	169, 236, 622, 716, 836
Hpy8I	GTNNAC	3 cut(s)	634, 760, 790
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	1 cut(s)	89
HpyCH4III	ACNGT	6 cut(s)	134, 274, 391, 540, 737, 887
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	9 cut(s)	89, 159, 298, 311, 647, 653, 686, 752, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	572, 611, 653, 662
HpyF3I	CTNAG	3 cut(s)	73, 796, 910
HpySE526I	ACGT	1 cut(s)	801
Hsp92II	CATG	5 cut(s)	131, 580, 625, 719, 781
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	33, 219, 509, 658
LmnI	GCTCC	1 cut(s)	248
LpnPI	CCDG	9 cut(s)	56, 123, 243, 424, 675, 876, 908, 921, 948
Lsp1109I	GCAGC	5 cut(s)	73, 101, 295, 665, 884
LweI	GCATC	2 cut(s)	739, 912
MabI	ACCWGGT	1 cut(s)	934
MaeI	CTAG	6 cut(s)	144, 236, 543, 567, 677, 1048
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	3 cut(s)	395, 493, 737
MalI	GATC	4 cut(s)	35, 221, 511, 660
MboI	GATC	4 cut(s)	33, 219, 509, 658
MboII	GAAGA	3 cut(s)	28, 332, 991
MluCI	AATT	5 cut(s)	151, 286, 466, 844, 889
MlyI	GAGTC	2 cut(s)	755, 990
MnlI	CCTC	9 cut(s)	195, 262, 427, 511, 627, 843, 907, 996, 1038
Mph1103I	ATGCAT	1 cut(s)	649
MseI	TTAA	4 cut(s)	63, 326, 692, 948
MslI	CAYNNNNRTG	3 cut(s)	126, 342, 491
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	3 cut(s)	411, 662, 863
MspR9I	CCNGG	2 cut(s)	411, 936
MvaI	CCWGG	1 cut(s)	936
MwoI	GCNNNNNNNGC	4 cut(s)	572, 611, 653, 662
NciI	CCSGG	1 cut(s)	411
NcoI	CCATGG	1 cut(s)	777
NdeI	CATATG	1 cut(s)	649
NdeII	GATC	4 cut(s)	33, 219, 509, 658
NheI	GCTAGC	2 cut(s)	143, 566
NlaIII	CATG	5 cut(s)	131, 580, 625, 719, 781
NlaIV	GGNNCC	3 cut(s)	250, 338, 415
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	649
PagI	TCATGA	2 cut(s)	621, 715
PkrI	GCNGC	5 cut(s)	88, 91, 310, 655, 874
PleI	GAGTC	2 cut(s)	755, 990
PpsI	GAGTC	2 cut(s)	755, 990
Psp6I	CCWGG	1 cut(s)	934
PspGI	CCWGG	1 cut(s)	934
PspN4I	GGNNCC	3 cut(s)	250, 338, 415
PspPI	GGNCC	1 cut(s)	413
PstI	CTGCAG	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	656
RsaI	GTAC	4 cut(s)	136, 383, 635, 672
RsaNI	GTAC	4 cut(s)	135, 382, 634, 671
RseI	CAYNNNNRTG	3 cut(s)	126, 342, 491
SaqAI	TTAA	4 cut(s)	63, 326, 692, 948
SatI	GCNGC	5 cut(s)	87, 90, 309, 654, 873
Sau3AI	GATC	4 cut(s)	33, 219, 509, 658
Sau96I	GGNCC	1 cut(s)	413
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	2 cut(s)	755, 990
ScrFI	CCNGG	2 cut(s)	411, 936
SexAI	ACCWGGT	1 cut(s)	934
SfaNI	GCATC	2 cut(s)	739, 912
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	3 cut(s)	126, 342, 491
SmlI	CTYRAG	1 cut(s)	609
SmoI	CTYRAG	1 cut(s)	609
Sse9I	AATT	5 cut(s)	151, 286, 466, 844, 889
SsiI	CCGC	3 cut(s)	48, 147, 674
SspMI	CTAG	6 cut(s)	144, 236, 543, 567, 677, 1048
StyD4I	CCNGG	2 cut(s)	409, 934
StyI	CCWWGG	1 cut(s)	777
TaaI	ACNGT	6 cut(s)	134, 274, 391, 540, 737, 887
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	2 cut(s)	168, 1002
TasI	AATT	5 cut(s)	151, 286, 466, 844, 889
TatI	WGTACW	2 cut(s)	134, 381
Tru1I	TTAA	4 cut(s)	63, 326, 692, 948
Tru9I	TTAA	4 cut(s)	63, 326, 692, 948
TscAI	CASTG	4 cut(s)	262, 277, 394, 1043
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	5 cut(s)	86, 89, 308, 653, 872
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	3 cut(s)	28, 458, 704
TspRI	CASTG	4 cut(s)	262, 277, 394, 1043
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	286
XbaI	TCTAGA	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	2 cut(s)	134, 706
XspI	CTAG	6 cut(s)	144, 236, 543, 567, 677, 1048
ZrmI	AGTACT	1 cut(s)	136
Zsp2I	ATGCAT	1 cut(s)	649

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.