Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415671.1

Orthogroup ID

OG0006024

Physical Location & Seq

Genomic Coordinates Forward (+)

186 .. 1373

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgcagaaaactgagtctaagaagagtaacagttcaggtcaattgttgcgtgacattgaggaaataagcaaagccctttacttgcatcaacctcgtccaaaggctttgttgcctcctcctcatgattcacggtccaaatcagctgaaaagacccggttttcgggttccaattcgaacccggcatttcttagggaagatttgttgcgtaaggacaagaagtcatcttcaatttggaattggaagaagcccttgaaggctctcagtcacattgggaatcggaagttcaattgttgtttttatcttcatgttcattcacttgaaggtttgcctgtgagtttcaacaatctgagtgtgtgtgtgcattggaagaggaaggatgaggtgcttcagaccagttgttcgatggtcgaagagggcatggctgaattcaatgaaactttgatgcataggtgtactgtgtatgggagtagaaatggcccaaacaattcggttaaatatgaggagaagctttgtttgatctacatttctgtgaatggggcaccggggcttgatattgggaagcattgggttgatcttacaaggctgttgccacttacttttgaggagttagagggggagaagagctttgggaaatggtcgactagctttaacctttcaggcaaggctaaaggcggtaacctaaatgttagtttggggtttttggtgacgcaggataaggttgctaatttgagtggtaatccaaatgttcctcaggttatagacgctgtgccgaaaaggtcaagtagcttggatactggtgctaggaggatgcttcgaagagttggtagcgtgccaagtaatgtaacctccaggcctgccttttcatctcagactcttgatttgaaggtttctcaggaagttatgctgaccggaggattggagctttccaagtcgattaatttcttatgtcagagacttgatgaggggaagttgggtactgtaatagagtcagattctgaagatgtggtcccactcaaacctcagccagatttggacggtttatctgctaagggaatcgaagagtatgaggatgataatgatgttgaatttaccattgtcgaagttgggacagaaatacctgagaaggaaaagttgaactctgatcgagtttctggtgatgctaatgacgtgtccgcaattgagaatatc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

396

Amino Acids

43.91

Weight (kDa)

6.49

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006024)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26160 AT5G26160 AT5G26160
fragaria_vesca	FvH4_2g31410 FvH4_2g31410
malus_domestica	MD08G1067600.v1.1 MD15G1054100.v1.1
prunus_persica	Prupe.1G407600_v2.0.a1 Prupe.1G407600_v2.0.a1 Prupe.1G407600_v2.0.a1 Prupe.1G407600_v2.0.a1
pyrus_communis	pycom08g05630 pycom15g05100
rosa_chinensis	RchiOBHm_Chr6g0311411
rosa_laevigata	RLG00000010409
rosa_multiflora	Rmu_co8415671.1_g000001 Rmu_co8482975.1_g000001 Rmu_sc0006915.1_g000007
rosa_roxburghii	Rroxscaffold_7G00157640
rosa_rugosa	Rorug06G0388700 Rorug06G0388800 Rorug06G0388900
rosa_samantha	Rh6AG503100 Rh6BG513700 Rh6CG519500 Rh6DG505700
rosa_wichuraiana	Rw6G043810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	638
AciI	CCGC	2 cut(s)	672, 1173
AcsI	RAATTY	2 cut(s)	425, 1085
AcuI	CTGAAG	2 cut(s)	371, 1017
AfaI	GTAC	2 cut(s)	454, 976
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	1167
AgsI	TTSAA	9 cut(s)	228, 253, 286, 320, 340, 430, 883, 1085, 1135
AhdI	GACNNNNNGTC	1 cut(s)	217
AjiI	CACGTC	1 cut(s)	1168
AjnI	CCWGG	1 cut(s)	848
AluBI	AGCT	6 cut(s)	143, 508, 624, 645, 786, 922
AluI	AGCT	6 cut(s)	143, 508, 624, 645, 786, 922
Alw26I	GTCTC	1 cut(s)	946
AlwNI	CAGNNNCTG	1 cut(s)	995
AoxI	GGCC	2 cut(s)	475, 851
ApoI	RAATTY	2 cut(s)	425, 1085
ArsI	GACNNNNNNTTYG	6 cut(s)	142, 174, 382, 414, 862, 894
AseI	ATTAAT	1 cut(s)	936
AspS9I	GGNCC	3 cut(s)	132, 476, 1006
AsuC2I	CCSGG	3 cut(s)	154, 179, 543
AsuHPI	GGTGA	2 cut(s)	715, 1166
AsuII	TTCGAA	2 cut(s)	173, 814
AvaII	GGWCC	2 cut(s)	132, 1006
AxyI	CCTNAGG	1 cut(s)	750
BaeGI	GKGCMC	1 cut(s)	541
BanI	GGYRCC	1 cut(s)	538
BbvCI	CCTCAGC	1 cut(s)	1020
BccI	CCATC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	74, 108
BciT130I	CCWGG	1 cut(s)	850
BciVI	GTATCC	1 cut(s)	784
BcnI	CCSGG	3 cut(s)	154, 179, 543
BcoDI	GTCTC	1 cut(s)	946
BfaI	CTAG	2 cut(s)	642, 801
BfuI	GTATCC	1 cut(s)	784
Bme1390I	CCNGG	4 cut(s)	154, 179, 543, 850
Bme18I	GGWCC	2 cut(s)	132, 1006
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgBI	CACGTC	1 cut(s)	1168
BmgT120I	GGNCC	3 cut(s)	132, 476, 1006
BmiI	GGNNCC	3 cut(s)	166, 540, 1008
BmrFI	CCNGG	4 cut(s)	154, 179, 543, 850
BmsI	GCATC	4 cut(s)	94, 432, 798, 1147
BpmI	CTGGAG	1 cut(s)	832
Bpu10I	CCTNAGC	2 cut(s)	1020, 1047
Bpu14I	TTCGAA	2 cut(s)	173, 814
BpuMI	CCSGG	3 cut(s)	154, 179, 543
BsaJI	CCNNGG	1 cut(s)	542
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	2 cut(s)	393, 799
Bse21I	CCTNAGG	1 cut(s)	750
BseBI	CCWGG	1 cut(s)	850
BseDI	CCNNGG	1 cut(s)	542
BseGI	GGATG	3 cut(s)	382, 813, 1075
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	7 cut(s)	274, 338, 764, 881, 905, 1034, 1110
BseNI	ACTGG	2 cut(s)	393, 799
BseRI	GAGGAG	4 cut(s)	105, 108, 515, 617
BseSI	GKGCMC	1 cut(s)	541
BshFI	GGCC	2 cut(s)	477, 853
BshNI	GGYRCC	1 cut(s)	538
BsiSI	CCGG	4 cut(s)	154, 179, 542, 909
BslFI	GGGAC	2 cut(s)	992, 1120
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	946
BsmFI	GGGAC	2 cut(s)	992, 1120
BsnI	GGCC	2 cut(s)	477, 853
Bsp119I	TTCGAA	2 cut(s)	173, 814
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	3 cut(s)	516, 571, 1141
BspACI	CCGC	2 cut(s)	672, 1173
BspANI	GGCC	2 cut(s)	477, 853
BspCNI	CTCAG	8 cut(s)	4, 273, 339, 763, 880, 904, 1033, 1111
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	3 cut(s)	166, 540, 1008
BspQI	GCTCTTC	1 cut(s)	614
BspT104I	TTCGAA	2 cut(s)	173, 814
BspT107I	GGYRCC	1 cut(s)	538
BsrI	ACTGG	2 cut(s)	393, 799
BssECI	CCNNGG	1 cut(s)	542
BssMI	GATC	3 cut(s)	516, 571, 1141
Bst2UI	CCWGG	1 cut(s)	850
Bst4CI	ACNGT	5 cut(s)	32, 132, 457, 979, 1037
Bst6I	CTCTTC	6 cut(s)	17, 362, 405, 614, 811, 1053
BstBI	TTCGAA	2 cut(s)	173, 814
BstC8I	GCNNGC	2 cut(s)	830, 855
BstEII	GGTNACC	1 cut(s)	674
BstF5I	GGATG	3 cut(s)	382, 813, 1075
BstKTI	GATC	3 cut(s)	519, 574, 1144
BstMAI	GTCTC	1 cut(s)	946
BstMBI	GATC	3 cut(s)	516, 571, 1141
BstNI	CCWGG	1 cut(s)	850
BstPI	GGTNACC	1 cut(s)	674
BstSCI	CCNGG	4 cut(s)	152, 177, 541, 848
BstSLI	GKGCMC	1 cut(s)	541
Bsu36I	CCTNAGG	1 cut(s)	750
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	2 cut(s)	477, 853
BtrI	CACGTC	1 cut(s)	1168
BtsCI	GGATG	3 cut(s)	382, 813, 1075
Cac8I	GCNNGC	2 cut(s)	830, 855
CaiI	CAGNNNCTG	1 cut(s)	995
CciI	TCATGA	1 cut(s)	121
Cfr13I	GGNCC	3 cut(s)	132, 476, 1006
CseI	GACGC	2 cut(s)	715, 770
Csp6I	GTAC	2 cut(s)	453, 975
CviAII	CATG	3 cut(s)	122, 305, 418
CviQI	GTAC	2 cut(s)	453, 975
DpnI	GATC	3 cut(s)	518, 573, 1143
DpnII	GATC	3 cut(s)	516, 571, 1141
DriI	GACNNNNNGTC	1 cut(s)	217
Eam1104I	CTCTTC	6 cut(s)	17, 362, 405, 614, 811, 1053
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	6 cut(s)	17, 362, 405, 614, 811, 1053
Eco147I	AGGCCT	1 cut(s)	853
Eco47I	GGWCC	2 cut(s)	132, 1006
Eco57I	CTGAAG	2 cut(s)	371, 1017
Eco81I	CCTNAGG	1 cut(s)	750
Eco91I	GGTNACC	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	848
EcoT22I	ATGCAT	1 cut(s)	447
FaeI	CATG	3 cut(s)	125, 308, 421
FalI	AAGNNNNNCTT	2 cut(s)	233, 265
FaqI	GGGAC	2 cut(s)	992, 1120
FatI	CATG	3 cut(s)	121, 304, 417
FblI	GTMKAC	1 cut(s)	638
FokI	GGATG	3 cut(s)	389, 820, 1082
FspBI	CTAG	2 cut(s)	642, 801
GsuI	CTGGAG	1 cut(s)	832
HaeIII	GGCC	2 cut(s)	477, 853
HapII	CCGG	4 cut(s)	154, 179, 542, 909
HgaI	GACGC	2 cut(s)	715, 770
Hin1II	CATG	3 cut(s)	125, 308, 421
HincII	GTYRAC	1 cut(s)	639
HindII	GTYRAC	1 cut(s)	639
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	7 cut(s)	14, 125, 274, 871, 986, 992, 1053
HpaII	CCGG	4 cut(s)	154, 179, 542, 909
HphI	GGTGA	2 cut(s)	715, 1166
Hpy166II	GTNNAC	2 cut(s)	453, 639
Hpy188I	TCNGA	8 cut(s)	279, 348, 390, 870, 951, 991, 997, 1141
Hpy188III	TCNNGA	3 cut(s)	122, 875, 893
Hpy8I	GTNNAC	2 cut(s)	453, 639
HpyAV	CCTTC	5 cut(s)	247, 314, 367, 877, 1117
HpyCH4III	ACNGT	5 cut(s)	32, 132, 457, 979, 1037
HpyCH4IV	ACGT	1 cut(s)	1167
HpyCH4V	TGCA	4 cut(s)	4, 85, 361, 445
HpySE526I	ACGT	1 cut(s)	1167
Hsp92II	CATG	3 cut(s)	125, 308, 421
Kzo9I	GATC	3 cut(s)	516, 571, 1141
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	919
LweI	GCATC	4 cut(s)	94, 432, 798, 1147
MaeI	CTAG	2 cut(s)	642, 801
MaeII	ACGT	1 cut(s)	1167
MaeIII	GTNAC	6 cut(s)	26, 50, 263, 674, 703, 841
MalI	GATC	3 cut(s)	518, 573, 1143
MboI	GATC	3 cut(s)	516, 571, 1141
MfeI	CAATTG	3 cut(s)	41, 286, 1176
MhlI	GDGCHC	1 cut(s)	541
MlyI	GAGTC	3 cut(s)	23, 865, 995
Mph1103I	ATGCAT	1 cut(s)	447
MseI	TTAA	3 cut(s)	492, 648, 936
MslI	CAYNNNNRTG	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	4 cut(s)	154, 179, 542, 909
MspR9I	CCNGG	4 cut(s)	154, 179, 543, 850
MunI	CAATTG	3 cut(s)	41, 286, 1176
MvaI	CCWGG	1 cut(s)	850
NciI	CCSGG	3 cut(s)	154, 179, 543
NdeII	GATC	3 cut(s)	516, 571, 1141
NlaIII	CATG	3 cut(s)	125, 308, 421
NlaIV	GGNNCC	3 cut(s)	166, 540, 1008
NmuCI	GTSAC	3 cut(s)	50, 263, 703
NsiI	ATGCAT	1 cut(s)	447
NspV	TTCGAA	2 cut(s)	173, 814
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	853
PciSI	GCTCTTC	1 cut(s)	614
PfeI	GAWTC	4 cut(s)	125, 274, 992, 1053
PleI	GAGTC	3 cut(s)	22, 865, 994
PpsI	GAGTC	3 cut(s)	22, 865, 994
PshBI	ATTAAT	1 cut(s)	936
Psp6I	CCWGG	1 cut(s)	848
PspEI	GGTNACC	1 cut(s)	674
PspGI	CCWGG	1 cut(s)	848
PspN4I	GGNNCC	3 cut(s)	166, 540, 1008
PspPI	GGNCC	3 cut(s)	132, 476, 1006
PstNI	CAGNNNCTG	1 cut(s)	995
PvuII	CAGCTG	1 cut(s)	143
RsaI	GTAC	2 cut(s)	454, 976
RsaNI	GTAC	2 cut(s)	453, 975
RseI	CAYNNNNRTG	1 cut(s)	527
SalI	GTCGAC	1 cut(s)	637
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	3 cut(s)	492, 648, 936
Sau3AI	GATC	3 cut(s)	516, 571, 1141
Sau96I	GGNCC	3 cut(s)	132, 476, 1006
SchI	GAGTC	3 cut(s)	23, 865, 995
ScrFI	CCNGG	4 cut(s)	154, 179, 543, 850
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	4 cut(s)	94, 432, 798, 1147
SfuI	TTCGAA	2 cut(s)	173, 814
SinI	GGWCC	2 cut(s)	132, 1006
SmiMI	CAYNNNNRTG	1 cut(s)	527
SseBI	AGGCCT	1 cut(s)	853
SsiI	CCGC	2 cut(s)	672, 1173
SspMI	CTAG	2 cut(s)	642, 801
StuI	AGGCCT	1 cut(s)	853
StyD4I	CCNGG	4 cut(s)	152, 177, 541, 848
TaaI	ACNGT	5 cut(s)	32, 132, 457, 979, 1037
TaiI	ACGT	1 cut(s)	1170
TaqI	TCGA	9 cut(s)	173, 401, 408, 638, 814, 932, 1056, 1098, 1144
TatI	WGTACW	1 cut(s)	452
TfiI	GAWTC	4 cut(s)	125, 274, 992, 1053
Tru1I	TTAA	3 cut(s)	492, 648, 936
Tru9I	TTAA	3 cut(s)	492, 648, 936
TseFI	GTSAC	3 cut(s)	50, 263, 703
Tsp45I	GTSAC	3 cut(s)	50, 263, 703
TspDTI	ATGAA	4 cut(s)	293, 299, 447, 852
VpaK11BI	GGWCC	2 cut(s)	132, 1006
VspI	ATTAAT	1 cut(s)	936
XapI	RAATTY	2 cut(s)	425, 1085
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	638
XspI	CTAG	2 cut(s)	642, 801
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.