Rmu_co8438539.1_g000001

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8438539.1
OG0022281
Physical Location & Seq
Forward (+)
1 .. 576
576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8438539.1_g000001.1.cds

Sequence Viewer

Length: 312 bp
atagtaaactggaaaactcatttgaaatttccagaagaagcaaagctatctccagaggcaaaagatcttattagtaaactcttgtgtcatgtcaaccaaaggttgggaacaaatggcgcaagtgaaataaaggttcatccttggtttgaaggtactgaatgggaaaagctttatcaaatggatgctgcatttattcctgaggtcaatgatgatctggatactcaaaattttgaaaagtttgaagaggctgacaaccaagctcagtcttcagccaaaaccggtccctggagaaaggtaagctttggaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_C

Protein Analysis

103

Amino Acids

11.82

Weight (kDa)

5.13

Isoelectric Point (pI)

19.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022281)

Species Orthologous Gene IDs
malus_domestica MD10G1242900.v1.1
pyrus_communis pycom05g24910 pycom10g20180
rosa_multiflora Rmu_co8438539.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AcsI RAATTY 3 cut(s) 26, 226, 306
AcuI CTGAAG 1 cut(s) 252
AfaI GTAC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 103, 285
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 4 cut(s) 25, 149, 233, 242
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 4 cut(s) 46, 169, 260, 300
AluI AGCT 4 cut(s) 46, 169, 260, 300
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 3 cut(s) 26, 226, 306
AsiGI ACCGGT 1 cut(s) 278
AspLEI GCGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 281
AvaII GGWCC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 286
BciVI GTATCC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 211
BglII AGATCT 1 cut(s) 64
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 286
BmsI GCATC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 2 cut(s) 36, 307
BsaJI CCNNGG 2 cut(s) 140, 284
BsaWI WCCGGW 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 285
Bse118I RCCGGY 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 14
Bse21I CCTNAGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 140, 284
BseGI GGATG 2 cut(s) 136, 187
BseLI CCNNNNNNNGG 2 cut(s) 103, 285
BseMII CTCAG 2 cut(s) 189, 275
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 172
BshTI ACCGGT 1 cut(s) 278
BsiSI CCGG 1 cut(s) 279
BslFI GGGAC 1 cut(s) 267
BslI CCNNNNNNNGG 2 cut(s) 103, 285
BsmFI GGGAC 1 cut(s) 267
Bsp143I GATC 2 cut(s) 64, 211
BspCNI CTCAG 2 cut(s) 190, 274
BspLI GGNNCC 1 cut(s) 283
BsrFI RCCGGY 1 cut(s) 278
BsrI ACTGG 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 140, 284
BssMI GATC 2 cut(s) 64, 211
BssT1I CCWWGG 1 cut(s) 140
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 237
BstDEI CTNAG 2 cut(s) 198, 261
BstF5I GGATG 2 cut(s) 136, 187
BstHHI GCGC 1 cut(s) 119
BstKTI GATC 2 cut(s) 67, 214
BstMBI GATC 2 cut(s) 64, 211
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstV1I GCAGC 1 cut(s) 172
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
Bsu36I CCTNAGG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 136, 187
CfoI GCGC 1 cut(s) 119
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 153
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 1 cut(s) 89
CviJI RGCY 6 cut(s) 46, 169, 248, 260, 272, 300
CviKI_1 RGCY 6 cut(s) 46, 169, 248, 260, 272, 300
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 2 cut(s) 198, 261
DpnI GATC 2 cut(s) 66, 213
DpnII GATC 2 cut(s) 64, 211
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
Eco130I CCWWGG 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 1 cut(s) 252
Eco81I CCTNAGG 1 cut(s) 198
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 140
ErhI CCWWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 92
FaiI YATR 1 cut(s) 90
FalI AAGNNNNNCTT 1 cut(s) 284
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 186
FokI GGATG 2 cut(s) 123, 194
Fsp4HI GCNGC 1 cut(s) 186
GlaI GCGC 1 cut(s) 118
GluI GCNGC 1 cut(s) 186
GsuI CTGGAG 2 cut(s) 36, 307
HapII CCGG 1 cut(s) 279
HhaI GCGC 1 cut(s) 119
Hin1II CATG 1 cut(s) 92
Hin6I GCGC 1 cut(s) 117
HinP1I GCGC 1 cut(s) 117
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 2 cut(s) 167, 298
HpaII CCGG 1 cut(s) 279
Hpy166II GTNNAC 3 cut(s) 7, 77, 94
Hpy188III TCNNGA 4 cut(s) 32, 53, 197, 215
Hpy8I GTNNAC 3 cut(s) 7, 77, 94
HpyAV CCTTC 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 2 cut(s) 198, 261
Hsp92II CATG 1 cut(s) 92
HspAI GCGC 1 cut(s) 117
Kzo9I GATC 2 cut(s) 64, 211
LpnPI CCDG 7 cut(s) 45, 66, 200, 210, 271, 292, 298
Lsp1109I GCAGC 1 cut(s) 172
LweI GCATC 1 cut(s) 172
MalI GATC 2 cut(s) 66, 213
MboI GATC 2 cut(s) 64, 211
MboII GAAGA 3 cut(s) 47, 254, 258
MflI RGATCY 1 cut(s) 64
MluCI AATT 3 cut(s) 26, 226, 306
MnlI CCTC 3 cut(s) 49, 193, 238
MseI TTAA 1 cut(s) 310
MspI CCGG 1 cut(s) 279
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
NdeII GATC 2 cut(s) 64, 211
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 1 cut(s) 283
PflMI CCANNNNNTGG 1 cut(s) 103
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 281
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 2 cut(s) 64, 211
Sau96I GGNCC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 286
SetI ASST 9 cut(s) 48, 104, 135, 154, 171, 204, 262, 297, 302
SfaNI GCATC 1 cut(s) 172
SinI GGWCC 1 cut(s) 281
Sse9I AATT 3 cut(s) 26, 226, 306
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 140
TasI AATT 3 cut(s) 26, 226, 306
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 3 cut(s) 26, 226, 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.