Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8452449.1

Orthogroup ID

OG0009410

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 423

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8452449.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 323 bp

atgtttaaggttccagatcatcaagttggtggccacatggccggtaatggagttcttggccctcttgttgatgatgcagggaacttttacaagcctcttcaaagtgatgaacgcggagccaaagaagtggcattctatacaggattatcaactgaaactaggattccagacgaaattcgcaagttcttccctgtctttcatggcacccgggatttggaggcatctgatggttctggtctgcatcctcaccttgtcttggaagatattgtctccagccgaaccaatccatctatattagacattaaaattggtgcgagcacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000823 GO:0000824 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006793 GO:0006796 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010154 GO:0010183 GO:0010264 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032958 GO:0032989 GO:0033517 GO:0040007 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046165 GO:0046173 GO:0048229 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051252 GO:0051704 GO:0051765 GO:0051766 GO:0052725 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090406 GO:0090407 GO:0120025 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 ko04138 ko04217 ko05034 ko05322 map00562 map01100 map04070 map04138 map04217 map05034 map05322

Pfam Domains

Protein Families

IPK

Protein Analysis

107

Amino Acids

11.59

Weight (kDa)

5.38

Isoelectric Point (pI)

21.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009410)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07370 AT5G07370 AT5G07370 AT5G07370 AT5G61760 AT5G61760
fragaria_vesca	FvH4_5g09980
malus_domestica	MD00G1076800.v1.1 MD06G1128700.v1.1
prunus_persica	Prupe.5G138600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0188281
rosa_laevigata	RLG00000004711
rosa_multiflora	Rmu_co8452449.1_g000001 Rmu_sc0008750.1_g000008
rosa_roxburghii	Rroxscaffold_3G00266530
rosa_rugosa	Rorug06G0489700
rosa_samantha	Rh7AG094100 Rh7BG095500 Rh7BG095700 Rh7CG095900 Rh7DG096100
rosa_wichuraiana	Rw7G008110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	1 cut(s)	114
AciI	CCGC	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	31, 39
AcsI	RAATTY	1 cut(s)	174
AfiI	CCNNNNNNNGG	2 cut(s)	214, 256
AgsI	TTSAA	1 cut(s)	101
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	274
Ama87I	CYCGRG	1 cut(s)	207
AoxI	GGCC	3 cut(s)	31, 39, 58
ApoI	RAATTY	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	2 cut(s)	208, 209
AsuHPI	GGTGA	1 cut(s)	239
AvaI	CYCGRG	1 cut(s)	207
BalI	TGGCCA	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	320
BccI	CCATC	2 cut(s)	221, 295
BcnI	CCSGG	2 cut(s)	208, 209
BcoDI	GTCTC	1 cut(s)	274
BfaI	CTAG	1 cut(s)	159
Bme1390I	CCNGG	2 cut(s)	208, 209
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	3 cut(s)	12, 118, 205
BmrFI	CCNGG	2 cut(s)	208, 209
BmsI	GCATC	3 cut(s)	64, 230, 250
BpmI	CTGGAG	1 cut(s)	256
BpuMI	CCSGG	2 cut(s)	208, 209
BsaJI	CCNNGG	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 256
Bse118I	RCCGGY	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	207
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	214, 256
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	3 cut(s)	33, 41, 60
BshNI	GGYRCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	42, 208
BslI	CCNNNNNNNGG	2 cut(s)	214, 256
BsmAI	GTCTC	1 cut(s)	274
BsmI	GAATGC	1 cut(s)	131
BsnI	GGCC	3 cut(s)	33, 41, 60
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	114
BspANI	GGCC	3 cut(s)	33, 41, 60
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	12, 118, 205
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	41
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	1 cut(s)	16
Bst6I	CTCTTC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	241
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	274
BstMBI	GATC	1 cut(s)	16
BstSCI	CCNGG	2 cut(s)	206, 207
BstUI	CGCG	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	33, 41, 60
BtsCI	GGATG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	59
Cfr9I	CCCGGG	1 cut(s)	207
CviAII	CATG	3 cut(s)	37, 200, 321
CviJI	RGCY	6 cut(s)	33, 41, 60, 94, 119, 276
CviKI_1	RGCY	6 cut(s)	33, 41, 60, 94, 119, 276
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EaeI	YGGCCR	2 cut(s)	31, 39
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco88I	CYCGRG	1 cut(s)	207
FaeI	CATG	2 cut(s)	40, 203
FaiI	YATR	5 cut(s)	38, 138, 201, 293, 322
FatI	CATG	2 cut(s)	36, 199
FokI	GGATG	1 cut(s)	228
FspBI	CTAG	1 cut(s)	159
GsuI	CTGGAG	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	33, 41, 60
HapII	CCGG	2 cut(s)	42, 208
Hin1II	CATG	2 cut(s)	40, 203
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	42, 208
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	226
Hpy188III	TCNNGA	2 cut(s)	14, 167
HpyCH4V	TGCA	2 cut(s)	77, 241
Hsp92II	CATG	2 cut(s)	40, 203
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	9 cut(s)	27, 55, 63, 126, 180, 204, 219, 221, 286
LweI	GCATC	3 cut(s)	64, 230, 250
MaeI	CTAG	1 cut(s)	159
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	3 cut(s)	89, 178, 272
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	33
MluCI	AATT	2 cut(s)	174, 306
MluNI	TGGCCA	1 cut(s)	33
MnlI	CCTC	4 cut(s)	72, 105, 211, 255
Mox20I	TGGCCA	1 cut(s)	33
MscI	TGGCCA	1 cut(s)	33
MseI	TTAA	2 cut(s)	6, 303
Msp20I	TGGCCA	1 cut(s)	33
MspI	CCGG	2 cut(s)	42, 208
MspR9I	CCNGG	2 cut(s)	208, 209
Mva1269I	GAATGC	1 cut(s)	131
MvnI	CGCG	1 cut(s)	114
NciI	CCSGG	2 cut(s)	208, 209
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	2 cut(s)	40, 203
NlaIV	GGNNCC	3 cut(s)	12, 118, 205
PctI	GAATGC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	12, 118, 205
PspPI	GGNCC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	6, 303
Sau3AI	GATC	1 cut(s)	16
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	2 cut(s)	208, 209
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	2 cut(s)	12, 252
SfaNI	GCATC	3 cut(s)	64, 230, 250
SmaI	CCCGGG	1 cut(s)	209
Sse9I	AATT	2 cut(s)	174, 306
SsiI	CCGC	1 cut(s)	114
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	206, 207
TasI	AATT	2 cut(s)	174, 306
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	6, 303
Tru9I	TTAA	2 cut(s)	6, 303
TspDTI	ATGAA	2 cut(s)	123, 188
TspMI	CCCGGG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	174
XmaI	CCCGGG	1 cut(s)	207
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.