Rroxscaffold_3G00266530

Inositol phosphate kinase with a broad substrate specificity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009410
Physical Location & Seq
Forward (+)
59784456 .. 59786904
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00266530.1

Sequence Viewer

Length: 849 bp
ATGTTTAAGGTTCCAGATCATCAAGTTGGTGGCCACATGGCCGGTAATGGAGTTCTTGGCCCTCTTGTTGATGATGCAGGGAACTTTTACAAGCCTCTTCAAAGTGATGAACGTGGAGCCAAAGAAGTGGCATTCTATACAGGATTATCAACTGAAACTAGGATTCCAGATGAAATTCGCAAGTTCTTCCCTGTCTTTCATGGCACCCGGGATTTGGAGGCATCTGATGGTTCTGGTCTGCATCCTCACCTTGTCTTGGAAGATATTGTCTCCAGCCGAACCAATCCATCTATATTAGACATTAAAATTGGTGCGAGCACATGGTACCCAGAAGCTTCTGAACAGTATATCACCAAGTGCCTTAAGAAAGATAGAGATGGCACGAGCCTGACATTGGGATTTAGATTATGTGGACTTCAGTTCTATGGAAACAAAGAAACTGGATTTTGGAAGCCGGACAGGAAGTCTGTTAATGCTTTTACTCATGATGACGTTCGCTCAGCTCTGAGGAAGTTTGTTTCTTCTAACTCGCCTTCAGATTCAGATGCCGAACCAGATTGTTCTTATGCATCAACTGTCTATGGTGGCCCTGATGGGATCGTGTCGCAATTGTTGAAACTGAAGTCATGGTTTGAGGATCAGACCATTTATCATTTCTATTCTTGCTCAATTATGATGGTGTATGATAAGGAGTCAATACTGAAAGGGAAGAATCCAAATCCTCAAATCAAACTTGTTGATTTTGCACATGTCGTGGAAGGGAAAGGTGTTATTGACCATAATTTTCTGGGTGGTCTCTGTTCCTTGATAAAGTTCCTGAAAGATGTCTTGAACAATCCTAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000823 GO:0000824 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006066 GO:0006355 GO:0006793 GO:0006796 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009555 GO:0009605 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009932 GO:0009987 GO:0010154 GO:0010183 GO:0010264 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032958 GO:0032989 GO:0033517 GO:0040007 GO:0040011 GO:0042221 GO:0042330 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0046165 GO:0046173 GO:0048229 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0050918 GO:0051171 GO:0051252 GO:0051704 GO:0051765 GO:0051766 GO:0052725 GO:0060255 GO:0060560 GO:0061458 GO:0065007 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0090406 GO:0090407 GO:0120025 GO:1901576 GO:1901615 GO:1901617 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00562 ko01100 ko04070 ko04138 ko04217 ko05034 ko05322 map00562 map01100 map04070 map04138 map04217 map05034 map05322
Pfam Domains
Protein Families
IPK

Protein Analysis

282

Amino Acids

31.35

Weight (kDa)

6.31

Isoelectric Point (pI)

24.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IPK PF03770 83 - 274 1.6e-47 Inositol polyphosphate kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 2 cut(s) 203, 324
AclWI GGATC 2 cut(s) 605, 645
AcoI YGGCCR 2 cut(s) 31, 39
AcsI RAATTY 1 cut(s) 174
AcuI CTGAAG 3 cut(s) 401, 519, 641
AdeI CACNNNGTG 1 cut(s) 357
AfaI GTAC 1 cut(s) 326
AfiI CCNNNNNNNGG 3 cut(s) 214, 256, 394
AflII CTTAAG 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 748
AgsI TTSAA 3 cut(s) 101, 616, 832
AhdI GACNNNNNGTC 1 cut(s) 463
AluBI AGCT 2 cut(s) 335, 503
AluI AGCT 2 cut(s) 335, 503
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 2 cut(s) 274, 800
AlwI GGATC 2 cut(s) 605, 645
Ama87I CYCGRG 1 cut(s) 207
AoxI GGCC 4 cut(s) 31, 39, 58, 586
ApoI RAATTY 1 cut(s) 174
Asp718I GGTACC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 59, 587
AsuC2I CCSGG 2 cut(s) 208, 209
AsuHPI GGTGA 2 cut(s) 239, 343
AvaI CYCGRG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 33
BanI GGYRCC 2 cut(s) 203, 324
BauI CACGAG 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 320
BccI CCATC 5 cut(s) 221, 295, 371, 587, 670
BcnI CCSGG 2 cut(s) 208, 209
BcoDI GTCTC 2 cut(s) 274, 800
BfaI CTAG 1 cut(s) 159
BfrI CTTAAG 1 cut(s) 362
BlpI GCTNAGC 1 cut(s) 499
Bme1390I CCNGG 2 cut(s) 208, 209
BmeRI GACNNNNNGTC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 59, 587
BmiI GGNNCC 4 cut(s) 12, 118, 205, 326
BmrFI CCNGG 2 cut(s) 208, 209
BmsI GCATC 5 cut(s) 64, 230, 250, 535, 578
BpmI CTGGAG 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 499
BpuMI CCSGG 2 cut(s) 208, 209
BsaI GGTCTC 1 cut(s) 800
BsaJI CCNNGG 1 cut(s) 207
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 256, 394
Bse118I RCCGGY 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 214, 256, 394
BseMII CTCAG 2 cut(s) 497, 513
BseNI ACTGG 1 cut(s) 445
BshFI GGCC 4 cut(s) 33, 41, 60, 588
BshNI GGYRCC 2 cut(s) 203, 324
BsiHKAI GWGCWC 1 cut(s) 320
BsiHKCI CYCGRG 1 cut(s) 207
BsiSI CCGG 3 cut(s) 42, 208, 455
BslI CCNNNNNNNGG 3 cut(s) 214, 256, 394
BsmAI GTCTC 2 cut(s) 274, 800
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 4 cut(s) 33, 41, 60, 588
Bso31I GGTCTC 1 cut(s) 800
BsoBI CYCGRG 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 3 cut(s) 16, 597, 637
Bsp1720I GCTNAGC 1 cut(s) 499
BspANI GGCC 4 cut(s) 33, 41, 60, 588
BspCNI CTCAG 2 cut(s) 498, 512
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 4 cut(s) 12, 118, 205, 326
BspPI GGATC 2 cut(s) 605, 645
BspT107I GGYRCC 2 cut(s) 203, 324
BspTI CTTAAG 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 800
BsrFI RCCGGY 1 cut(s) 41
BsrI ACTGG 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 3 cut(s) 16, 597, 637
BssSI CACGAG 1 cut(s) 382
Bst2BI CACGAG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 345, 577
Bst6I CTCTTC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 499, 506, 840
BstF5I GGATG 1 cut(s) 241
BstKTI GATC 3 cut(s) 19, 600, 640
BstMAI GTCTC 2 cut(s) 274, 800
BstMBI GATC 3 cut(s) 16, 597, 637
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 2 cut(s) 206, 207
BstXI CCANNNNNNTGG 1 cut(s) 127
BsuRI GGCC 4 cut(s) 33, 41, 60, 588
BtsCI GGATG 1 cut(s) 241
Cac8I GCNNGC 1 cut(s) 316
CciI TCATGA 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 59, 587
Cfr9I CCCGGG 1 cut(s) 207
Csp6I GTAC 1 cut(s) 325
CviAII CATG 6 cut(s) 37, 200, 321, 485, 627, 749
CviQI GTAC 1 cut(s) 325
DdeI CTNAG 3 cut(s) 499, 506, 840
DpnI GATC 3 cut(s) 18, 599, 639
DpnII GATC 3 cut(s) 16, 597, 637
DraIII CACNNNGTG 1 cut(s) 357
DriI GACNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 2 cut(s) 31, 39
Eam1104I CTCTTC 1 cut(s) 102
Eam1105I GACNNNNNGTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 102
Eco31I GGTCTC 1 cut(s) 800
Eco57I CTGAAG 3 cut(s) 401, 519, 641
Eco88I CYCGRG 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 571
FaeI CATG 6 cut(s) 40, 203, 324, 488, 630, 752
FatI CATG 6 cut(s) 36, 199, 320, 484, 626, 748
FokI GGATG 1 cut(s) 228
FspBI CTAG 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 256
HaeIII GGCC 4 cut(s) 33, 41, 60, 588
HapII CCGG 3 cut(s) 42, 208, 455
Hin1II CATG 6 cut(s) 40, 203, 324, 488, 630, 752
HindIII AAGCTT 1 cut(s) 333
HinfI GANTC 4 cut(s) 163, 539, 692, 712
HpaII CCGG 3 cut(s) 42, 208, 455
HphI GGTGA 2 cut(s) 239, 343
Hpy166II GTNNAC 1 cut(s) 413
Hpy188I TCNGA 6 cut(s) 226, 340, 507, 538, 544, 642
Hpy188III TCNNGA 5 cut(s) 14, 167, 485, 817, 829
Hpy8I GTNNAC 1 cut(s) 413
HpyAV CCTTC 2 cut(s) 543, 752
HpyCH4III ACNGT 2 cut(s) 345, 577
HpyCH4IV ACGT 2 cut(s) 112, 492
HpyCH4V TGCA 4 cut(s) 77, 241, 569, 746
HpyF3I CTNAG 3 cut(s) 499, 506, 840
HpySE526I ACGT 2 cut(s) 112, 492
Hsp92II CATG 6 cut(s) 40, 203, 324, 488, 630, 752
KpnI GGTACC 1 cut(s) 328
Kzo9I GATC 3 cut(s) 16, 597, 637
LmnI GCTCC 1 cut(s) 116
LweI GCATC 5 cut(s) 64, 230, 250, 535, 578
MaeI CTAG 1 cut(s) 159
MaeII ACGT 2 cut(s) 112, 492
MalI GATC 3 cut(s) 18, 599, 639
MboI GATC 3 cut(s) 16, 597, 637
MboII GAAGA 5 cut(s) 89, 178, 272, 513, 721
MfeI CAATTG 1 cut(s) 608
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 5 cut(s) 174, 306, 608, 669, 781
MluNI TGGCCA 1 cut(s) 33
MlyI GAGTC 1 cut(s) 701
MnlI CCTC 7 cut(s) 72, 105, 211, 255, 501, 628, 732
Mox20I TGGCCA 1 cut(s) 33
Mph1103I ATGCAT 1 cut(s) 571
MscI TGGCCA 1 cut(s) 33
MseI TTAA 4 cut(s) 6, 303, 363, 471
Msp20I TGGCCA 1 cut(s) 33
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 3 cut(s) 42, 208, 455
MspR9I CCNGG 2 cut(s) 208, 209
MunI CAATTG 1 cut(s) 608
Mva1269I GAATGC 1 cut(s) 131
NciI CCSGG 2 cut(s) 208, 209
NdeII GATC 3 cut(s) 16, 597, 637
NlaIII CATG 6 cut(s) 40, 203, 324, 488, 630, 752
NlaIV GGNNCC 4 cut(s) 12, 118, 205, 326
NsiI ATGCAT 1 cut(s) 571
NspI RCATGY 1 cut(s) 752
PagI TCATGA 1 cut(s) 484
PciI ACATGT 1 cut(s) 748
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 3 cut(s) 163, 539, 712
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PscI ACATGT 1 cut(s) 748
PspN4I GGNNCC 4 cut(s) 12, 118, 205, 326
PspPI GGNCC 2 cut(s) 59, 587
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SaqAI TTAA 4 cut(s) 6, 303, 363, 471
Sau3AI GATC 3 cut(s) 16, 597, 637
Sau96I GGNCC 2 cut(s) 59, 587
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 2 cut(s) 208, 209
SduI GDGCHC 1 cut(s) 320
SetI ASST 7 cut(s) 12, 115, 252, 337, 495, 505, 769
SfaNI GCATC 5 cut(s) 64, 230, 250, 535, 578
SmaI CCCGGG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 5 cut(s) 174, 306, 608, 669, 781
SspMI CTAG 1 cut(s) 159
StyD4I CCNGG 2 cut(s) 206, 207
TaaI ACNGT 2 cut(s) 345, 577
TaiI ACGT 2 cut(s) 115, 495
TasI AATT 5 cut(s) 174, 306, 608, 669, 781
TfiI GAWTC 3 cut(s) 163, 539, 712
Tru1I TTAA 4 cut(s) 6, 303, 363, 471
Tru9I TTAA 4 cut(s) 6, 303, 363, 471
TspDTI ATGAA 3 cut(s) 123, 186, 188
TspMI CCCGGG 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 362
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 752
XmaI CCCGGG 1 cut(s) 207
XspI CTAG 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.