Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8463923.1

Orthogroup ID

OG0019931

Physical Location & Seq

Genomic Coordinates Forward (+)

47 .. 1667

Gene Structure 1621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8463923.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggattctgcaatagatctcttctctggtttgtcatcaaagcatcttcaacctgatgtgtggacgtataatataatgattcttggattttgtaaaggaggcctattaggtgaagctgaagaattgtttacagaaatgaaggagaaaggctgttctccagatggctgtacctataacacaattatccgaggttttatcaatatcaatgagacatcaagggctacgggacttattcaagaaatgcgtgataggggtttctctgcagatgcatcaactctgcacttgattgttgatttattgtcgaaggatacagtagatccttgctgcacctttagcaacctcagatgttctgtgaatcctgtctgggcgatatttccttctttgttgctacttcaaaagggcatcacagatatggaggacaggaaacaaaaagaggtttgtactgtcagattcagaagaaaggatgagatggagagaggaaagctctctgaaattgacatggaaagagaagaggagtgtggaatttgcatggaggtgaacaataaagttgtgttgcttaactgcagtcattcattgcgtctgaagtgtttgaggacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051865 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

199

Amino Acids

22.53

Weight (kDa)

5.34

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019931)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0077461
rosa_laevigata	RLG00000036700
rosa_multiflora	Rmu_co8463923.1_g000001
rosa_rugosa	Rorug05G0455300
rosa_samantha	Rh5AG453400 Rh5BG531800 Rh5DG543700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	311
AcsI	RAATTY	1 cut(s)	522
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	169, 442
AgsI	TTSAA	3 cut(s)	50, 236, 395
AluBI	AGCT	2 cut(s)	116, 484
AluI	AGCT	2 cut(s)	116, 484
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	311
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	324
ApoI	RAATTY	1 cut(s)	522
AsuHPI	GGTGA	2 cut(s)	122, 547
BbvI	GCAGC	1 cut(s)	311
BccI	CCATC	2 cut(s)	155, 463
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	203
BfmI	CTRYAG	2 cut(s)	261, 562
BfuI	GTATCC	1 cut(s)	301
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
BmsI	GCATC	4 cut(s)	52, 256, 278, 411
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
BpmI	CTGGAG	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	1 cut(s)	469
BseMI	GCAATG	1 cut(s)	572
BseMII	CTCAG	1 cut(s)	355
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	311
BsgI	GTGCAG	2 cut(s)	263, 310
BshFI	GGCC	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	240
BsnI	GGCC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	16, 316
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	354
BspMAI	CTGCAG	2 cut(s)	265, 566
BspPI	GGATC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	572
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	16, 316
Bst4CI	ACNGT	2 cut(s)	313, 445
Bst6I	CTCTTC	2 cut(s)	26, 504
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	469
BstKTI	GATC	2 cut(s)	19, 319
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	16, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	333
BstSFI	CTRYAG	2 cut(s)	261, 562
BstV1I	GCAGC	1 cut(s)	311
BstX2I	RGATCY	2 cut(s)	16, 316
BstYI	RGATCY	2 cut(s)	16, 316
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	469
CseI	GACGC	1 cut(s)	566
Csp6I	GTAC	2 cut(s)	168, 441
CviAII	CATG	2 cut(s)	499, 529
CviJI	RGCY	6 cut(s)	102, 116, 150, 165, 221, 484
CviKI_1	RGCY	6 cut(s)	102, 116, 150, 165, 221, 484
CviQI	GTAC	2 cut(s)	168, 441
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	2 cut(s)	18, 318
DpnII	GATC	2 cut(s)	16, 316
Eam1104I	CTCTTC	2 cut(s)	26, 504
EarI	CTCTTC	2 cut(s)	26, 504
Eco147I	AGGCCT	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	271
FaeI	CATG	2 cut(s)	502, 532
FaiI	YATR	6 cut(s)	69, 74, 174, 413, 500, 530
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	2 cut(s)	498, 528
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	325
GluI	GCNGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	141
HaeIII	GGCC	1 cut(s)	102
HgaI	GACGC	1 cut(s)	566
Hin1II	CATG	2 cut(s)	502, 532
HinfI	GANTC	4 cut(s)	5, 79, 355, 450
HphI	GGTGA	2 cut(s)	122, 547
Hpy166II	GTNNAC	3 cut(s)	63, 129, 538
Hpy188I	TCNGA	6 cut(s)	188, 344, 449, 455, 490, 582
Hpy188III	TCNNGA	2 cut(s)	158, 236
Hpy8I	GTNNAC	3 cut(s)	63, 129, 538
HpyAV	CCTTC	3 cut(s)	133, 298, 387
HpyCH4III	ACNGT	2 cut(s)	313, 445
HpyCH4IV	ACGT	2 cut(s)	65, 596
HpyCH4V	TGCA	7 cut(s)	11, 263, 269, 280, 327, 528, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	333
HpyF3I	CTNAG	1 cut(s)	341
HpySE526I	ACGT	2 cut(s)	65, 596
Hsp92II	CATG	2 cut(s)	502, 532
Kzo9I	GATC	2 cut(s)	16, 316
LpnPI	CCDG	6 cut(s)	12, 66, 171, 349, 372, 406
Lsp1109I	GCAGC	1 cut(s)	311
LweI	GCATC	4 cut(s)	52, 256, 278, 411
MaeII	ACGT	2 cut(s)	65, 596
MalI	GATC	2 cut(s)	18, 318
MboI	GATC	2 cut(s)	16, 316
MboII	GAAGA	5 cut(s)	13, 38, 131, 468, 521
MflI	RGATCY	2 cut(s)	16, 316
MluCI	AATT	4 cut(s)	122, 180, 492, 522
MnlI	CCTC	9 cut(s)	92, 182, 350, 409, 427, 470, 505, 526, 585
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	1 cut(s)	558
MslI	CAYNNNNRTG	2 cut(s)	410, 533
MwoI	GCNNNNNNNGC	1 cut(s)	333
NdeII	GATC	2 cut(s)	16, 316
NlaIII	CATG	2 cut(s)	502, 532
NsiI	ATGCAT	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	102
PfeI	GAWTC	4 cut(s)	5, 79, 355, 450
PkrI	GCNGC	1 cut(s)	326
PstI	CTGCAG	2 cut(s)	265, 566
PsuI	RGATCY	2 cut(s)	16, 316
RsaI	GTAC	2 cut(s)	169, 442
RsaNI	GTAC	2 cut(s)	168, 441
RseI	CAYNNNNRTG	2 cut(s)	410, 533
SaqAI	TTAA	1 cut(s)	558
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	2 cut(s)	16, 316
SfaNI	GCATC	4 cut(s)	52, 256, 278, 411
SfcI	CTRYAG	2 cut(s)	261, 562
SmiMI	CAYNNNNRTG	2 cut(s)	410, 533
Sse9I	AATT	4 cut(s)	122, 180, 492, 522
SseBI	AGGCCT	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	313, 445
TaiI	ACGT	2 cut(s)	68, 599
TaqI	TCGA	1 cut(s)	302
TasI	AATT	4 cut(s)	122, 180, 492, 522
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	4 cut(s)	5, 79, 355, 450
Tru1I	TTAA	1 cut(s)	558
Tru9I	TTAA	1 cut(s)	558
TseI	GCWGC	1 cut(s)	324
TspDTI	ATGAA	2 cut(s)	152, 561
XapI	RAATTY	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.