Prokaryotic RING finger family 4
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0077461 |
| rosa_laevigata | RLG00000036700 |
| rosa_multiflora | Rmu_co8463923.1_g000001 |
| rosa_rugosa | Rorug05G0455300 |
| rosa_samantha | Rh5AG453400 Rh5BG531800 Rh5DG543700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 241 |
| AcsI | RAATTY | 1 cut(s) | 141 |
| AcuI | CTGAAG | 2 cut(s) | 33, 189 |
| AfaI | GTAC | 2 cut(s) | 61, 186 |
| AluBI | AGCT | 1 cut(s) | 103 |
| AluI | AGCT | 1 cut(s) | 103 |
| Alw26I | GTCTC | 2 cut(s) | 227, 238 |
| Ama87I | CYCGRG | 1 cut(s) | 255 |
| ApoI | RAATTY | 1 cut(s) | 141 |
| AvaI | CYCGRG | 1 cut(s) | 255 |
| BaeGI | GKGCMC | 1 cut(s) | 256 |
| BccI | CCATC | 1 cut(s) | 82 |
| BcoDI | GTCTC | 2 cut(s) | 227, 238 |
| BmeT110I | CYCGRG | 1 cut(s) | 255 |
| BmsI | GCATC | 1 cut(s) | 30 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 87, 119 |
| BsaI | GGTCTC | 1 cut(s) | 238 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 235, 265 |
| BseGI | GGATG | 1 cut(s) | 88 |
| BseRI | GAGGAG | 1 cut(s) | 146 |
| BseSI | GKGCMC | 1 cut(s) | 256 |
| BsiHKCI | CYCGRG | 1 cut(s) | 255 |
| BsmAI | GTCTC | 2 cut(s) | 227, 238 |
| BsmBI | CGTCTC | 1 cut(s) | 227 |
| Bso31I | GGTCTC | 1 cut(s) | 238 |
| BsoBI | CYCGRG | 1 cut(s) | 255 |
| Bsp1286I | GDGCHC | 1 cut(s) | 256 |
| Bsp143I | GATC | 1 cut(s) | 189 |
| BspACI | CCGC | 1 cut(s) | 241 |
| BspTNI | GGTCTC | 1 cut(s) | 238 |
| BssMI | GATC | 1 cut(s) | 189 |
| Bst4CI | ACNGT | 3 cut(s) | 64, 201, 238 |
| Bst6I | CTCTTC | 1 cut(s) | 123 |
| BstF5I | GGATG | 1 cut(s) | 88 |
| BstKTI | GATC | 1 cut(s) | 192 |
| BstMAI | GTCTC | 2 cut(s) | 227, 238 |
| BstMBI | GATC | 1 cut(s) | 189 |
| BstSLI | GKGCMC | 1 cut(s) | 256 |
| BtsCI | GGATG | 1 cut(s) | 88 |
| Csp6I | GTAC | 2 cut(s) | 60, 185 |
| CviAII | CATG | 2 cut(s) | 118, 148 |
| CviJI | RGCY | 1 cut(s) | 103 |
| CviKI_1 | RGCY | 1 cut(s) | 103 |
| CviQI | GTAC | 2 cut(s) | 60, 185 |
| DpnI | GATC | 1 cut(s) | 191 |
| DpnII | GATC | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 1 cut(s) | 123 |
| EarI | CTCTTC | 1 cut(s) | 123 |
| Eco31I | GGTCTC | 1 cut(s) | 238 |
| Eco32I | GATATC | 1 cut(s) | 218 |
| Eco57I | CTGAAG | 2 cut(s) | 33, 189 |
| Eco88I | CYCGRG | 1 cut(s) | 255 |
| EcoRV | GATATC | 1 cut(s) | 218 |
| Esp3I | CGTCTC | 1 cut(s) | 227 |
| FaeI | CATG | 2 cut(s) | 121, 151 |
| FaiI | YATR | 2 cut(s) | 119, 149 |
| FatI | CATG | 2 cut(s) | 117, 147 |
| FokI | GGATG | 1 cut(s) | 95 |
| Hin1II | CATG | 2 cut(s) | 121, 151 |
| HinfI | GANTC | 2 cut(s) | 69, 152 |
| Hpy188I | TCNGA | 5 cut(s) | 13, 68, 74, 109, 169 |
| HpyAV | CCTTC | 2 cut(s) | 11, 206 |
| HpyCH4III | ACNGT | 3 cut(s) | 64, 201, 238 |
| HpyCH4IV | ACGT | 1 cut(s) | 183 |
| HpyCH4V | TGCA | 1 cut(s) | 147 |
| HpySE526I | ACGT | 1 cut(s) | 183 |
| Hsp92II | CATG | 2 cut(s) | 121, 151 |
| Kzo9I | GATC | 1 cut(s) | 189 |
| LpnPI | CCDG | 1 cut(s) | 25 |
| LweI | GCATC | 1 cut(s) | 30 |
| MaeII | ACGT | 1 cut(s) | 183 |
| MalI | GATC | 1 cut(s) | 191 |
| MboI | GATC | 1 cut(s) | 189 |
| MboII | GAAGA | 4 cut(s) | 26, 87, 140, 221 |
| MhlI | GDGCHC | 1 cut(s) | 256 |
| MluCI | AATT | 2 cut(s) | 111, 141 |
| MlyI | GAGTC | 1 cut(s) | 161 |
| MnlI | CCTC | 5 cut(s) | 28, 46, 89, 124, 172 |
| NdeII | GATC | 1 cut(s) | 189 |
| NlaIII | CATG | 2 cut(s) | 121, 151 |
| PfeI | GAWTC | 1 cut(s) | 69 |
| PleI | GAGTC | 1 cut(s) | 160 |
| PpsI | GAGTC | 1 cut(s) | 160 |
| RsaI | GTAC | 2 cut(s) | 61, 186 |
| RsaNI | GTAC | 2 cut(s) | 60, 185 |
| Sau3AI | GATC | 1 cut(s) | 189 |
| SchI | GAGTC | 1 cut(s) | 161 |
| SduI | GDGCHC | 1 cut(s) | 256 |
| SetI | ASST | 4 cut(s) | 57, 105, 186, 250 |
| SfaNI | GCATC | 1 cut(s) | 30 |
| SgeI | CNNG | 7 cut(s) | 52, 130, 160, 205, 234, 241, 261 |
| Sse9I | AATT | 2 cut(s) | 111, 141 |
| SsiI | CCGC | 1 cut(s) | 241 |
| TaaI | ACNGT | 3 cut(s) | 64, 201, 238 |
| TaiI | ACGT | 1 cut(s) | 186 |
| TasI | AATT | 2 cut(s) | 111, 141 |
| TatI | WGTACW | 1 cut(s) | 59 |
| TfiI | GAWTC | 1 cut(s) | 69 |
| TspDTI | ATGAA | 1 cut(s) | 148 |
| TspGWI | ACGGA | 1 cut(s) | 210 |
| XapI | RAATTY | 1 cut(s) | 141 |