Prokaryotic RING finger family 4
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0077461 |
| rosa_laevigata | RLG00000036700 |
| rosa_multiflora | Rmu_co8463923.1_g000001 |
| rosa_rugosa | Rorug05G0455300 |
| rosa_samantha | Rh5AG453400 Rh5BG531800 Rh5DG543700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 16, 255 |
| AfaI | GTAC | 1 cut(s) | 175 |
| AflIII | ACRYGT | 1 cut(s) | 75 |
| AgsI | TTSAA | 1 cut(s) | 128 |
| AluBI | AGCT | 1 cut(s) | 217 |
| AluI | AGCT | 1 cut(s) | 217 |
| Alw21I | GWGCWC | 1 cut(s) | 73 |
| ApoI | RAATTY | 2 cut(s) | 16, 255 |
| AsuHPI | GGTGA | 1 cut(s) | 280 |
| Bbv12I | GWGCWC | 1 cut(s) | 73 |
| BccI | CCATC | 1 cut(s) | 196 |
| BfmI | CTRYAG | 2 cut(s) | 31, 295 |
| BmsI | GCATC | 1 cut(s) | 144 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 201, 233 |
| Bse3DI | GCAATG | 1 cut(s) | 305 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseMI | GCAATG | 1 cut(s) | 305 |
| BseRI | GAGGAG | 1 cut(s) | 260 |
| BsiHKAI | GWGCWC | 1 cut(s) | 73 |
| Bsp1286I | GDGCHC | 1 cut(s) | 73 |
| BspMAI | CTGCAG | 2 cut(s) | 35, 299 |
| BsrDI | GCAATG | 1 cut(s) | 305 |
| Bst4CI | ACNGT | 1 cut(s) | 178 |
| Bst6I | CTCTTC | 1 cut(s) | 237 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstNSI | RCATGY | 1 cut(s) | 79 |
| BstSFI | CTRYAG | 2 cut(s) | 31, 295 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| CseI | GACGC | 1 cut(s) | 299 |
| Csp6I | GTAC | 1 cut(s) | 174 |
| CviAII | CATG | 3 cut(s) | 76, 232, 262 |
| CviJI | RGCY | 1 cut(s) | 217 |
| CviKI_1 | RGCY | 1 cut(s) | 217 |
| CviQI | GTAC | 1 cut(s) | 174 |
| Eam1104I | CTCTTC | 1 cut(s) | 237 |
| EarI | CTCTTC | 1 cut(s) | 237 |
| FaeI | CATG | 3 cut(s) | 79, 235, 265 |
| FaiI | YATR | 5 cut(s) | 62, 77, 146, 233, 263 |
| FatI | CATG | 3 cut(s) | 75, 231, 261 |
| FokI | GGATG | 1 cut(s) | 209 |
| HgaI | GACGC | 1 cut(s) | 299 |
| Hin1II | CATG | 3 cut(s) | 79, 235, 265 |
| HinfI | GANTC | 1 cut(s) | 183 |
| HphI | GGTGA | 1 cut(s) | 280 |
| Hpy166II | GTNNAC | 1 cut(s) | 271 |
| Hpy188I | TCNGA | 4 cut(s) | 182, 188, 223, 315 |
| Hpy8I | GTNNAC | 1 cut(s) | 271 |
| HpyAV | CCTTC | 1 cut(s) | 120 |
| HpyCH4III | ACNGT | 1 cut(s) | 178 |
| HpyCH4IV | ACGT | 1 cut(s) | 329 |
| HpyCH4V | TGCA | 3 cut(s) | 33, 261, 297 |
| HpySE526I | ACGT | 1 cut(s) | 329 |
| Hsp92II | CATG | 3 cut(s) | 79, 235, 265 |
| LpnPI | CCDG | 3 cut(s) | 19, 81, 139 |
| LweI | GCATC | 1 cut(s) | 144 |
| MaeII | ACGT | 1 cut(s) | 329 |
| MboII | GAAGA | 3 cut(s) | 51, 201, 254 |
| MhlI | GDGCHC | 1 cut(s) | 73 |
| MluCI | AATT | 3 cut(s) | 16, 225, 255 |
| MnlI | CCTC | 6 cut(s) | 142, 160, 203, 238, 259, 318 |
| MseI | TTAA | 2 cut(s) | 6, 291 |
| MslI | CAYNNNNRTG | 2 cut(s) | 143, 266 |
| NlaIII | CATG | 3 cut(s) | 79, 235, 265 |
| NspI | RCATGY | 1 cut(s) | 79 |
| PciI | ACATGT | 1 cut(s) | 75 |
| PfeI | GAWTC | 1 cut(s) | 183 |
| PscI | ACATGT | 1 cut(s) | 75 |
| PstI | CTGCAG | 2 cut(s) | 35, 299 |
| RsaI | GTAC | 1 cut(s) | 175 |
| RsaNI | GTAC | 1 cut(s) | 174 |
| RseI | CAYNNNNRTG | 2 cut(s) | 143, 266 |
| SaqAI | TTAA | 2 cut(s) | 6, 291 |
| SduI | GDGCHC | 1 cut(s) | 73 |
| SetI | ASST | 4 cut(s) | 171, 219, 270, 332 |
| SfaNI | GCATC | 1 cut(s) | 144 |
| SfcI | CTRYAG | 2 cut(s) | 31, 295 |
| SgeI | CNNG | 8 cut(s) | 46, 68, 88, 102, 108, 166, 244, 274 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 143, 266 |
| Sse9I | AATT | 3 cut(s) | 16, 225, 255 |
| TaaI | ACNGT | 1 cut(s) | 178 |
| TaiI | ACGT | 1 cut(s) | 332 |
| TasI | AATT | 3 cut(s) | 16, 225, 255 |
| TatI | WGTACW | 1 cut(s) | 173 |
| TfiI | GAWTC | 1 cut(s) | 183 |
| Tru1I | TTAA | 2 cut(s) | 6, 291 |
| Tru9I | TTAA | 2 cut(s) | 6, 291 |
| TspDTI | ATGAA | 2 cut(s) | 16, 294 |
| TspGWI | ACGGA | 1 cut(s) | 106 |
| XapI | RAATTY | 2 cut(s) | 16, 255 |
| XceI | RCATGY | 1 cut(s) | 79 |