Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470243.1

Orthogroup ID

OG0010706

Physical Location & Seq

Genomic Coordinates Forward (+)

63 .. 1999

Gene Structure 1937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470243.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1623 bp

atgtcgtcggccggtgttgccgctctcagtccggttcactgtgagccgttgctcactggtggtaactgtcctgctatgtcgtgtatgtcgtcgagtgaatcgattttgatatacctgtctgtttcgggatcgactactcctatgagtgtgttgaaatcggattcgattgagtctgtgaagcttaggattcagacatataaggggtttgttgtgaagaagcagaagctagtgtgtggagggagggaactggctcggagtaattcgatactgagggaatatggagtgtcggatgggaatgtgatgcatttggttcttaggctgtctgatcttcaggagatcaatgttcgaactaattgtgggaaagagttaacgttccatgtggagcgtgggaaagatgttgggtatgtaaagcagaagattgcgaagaatagtaaagagtttgttgatctagaggagcaggaagttgtgttggatggaaagccacttgaggatcagaagcttattgatgacatatgtaaacagaatgatggtgtgttacatttgttggttcggaagtctgcaaaacttcgtgctagacctgttgagaagaactttgagttgtctattgtggcgtcacatgtggatgatgggaaaaaggaaattgatggagagaatgtgaagcagcaatatgatgctggtgagcaagagtttagcagaggttacaaagctgatgagatgattgagccaagaaagccgctggatagagaatttgggttggagcctgtcattgttaaccccaagattgaattgccgtctgtgatctgggatatggttgatgaaacagttgaaggactagagagtgggaatcacccaatcaggtcaatggagggtacaggaggagcatattttatggtggactcatctgggaaaaagtatgtgtctgtgtttaagccaattgatgaggagcctatggctgtgaacaatccaagagggcttccattgtcattggatggggaaggattgaaaaaggggacaagagttggagaaggggctttcagagaggttgcagcttaccttttggatcatccaaagggtgggcggcgtatgttgtatggtgatgggaaaggctttgctggagttccaccaacattcatagtgaagtgctttcatagaggattcaacaacccagaagatgtaatggtcaaaattggttccttacagaagttcatggagaatgatggaagttgtgaggacatgggccctggtgcgttcccaactgaggaagtgcataagatttctgttttggacctgagattggccaatgcggacagacacgcaggaaatatcttgctgagcaaagagggtgaagctggccagactatgctgattcccattgaccacggttactgcttgccagaaagttttgaagatgtgacattcgactggctctattggccacaagcacgcaaaccctatgctgaggaggtggttgattacataaaatcattggatgctgaggaggatattgcccttctgaagttccatggatgggagatgccaccaaaatgtgctcgcacacttcggatttcaaccatgctgctgaagaaaggagtagagagagggctcactccttttgacatagga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

541

Amino Acids

59.94

Weight (kDa)

5.45

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46500 AT2G46500 AT2G46500
fragaria_vesca	FvH4_7g16460 FvH4_7g16460
malus_domestica	MD01G1081200.v1.1 MD07G1150000.v1.1
prunus_persica	Prupe.2G188900_v2.0.a1
pyrus_communis	pycom07g14860
rosa_chinensis	RchiOBHm_Chr1g0359561
rosa_laevigata	RLG00000027862
rosa_multiflora	Rmu_co8470243.1_g000001 Rmu_sc0002556.1_g000019 Rmu_sc0013097.1_g000002
rosa_rugosa	Rorug01G0272200
rosa_samantha	Rh1AG285400 Rh1BG251600 Rh1CG269200 Rh1DG280600
rosa_wichuraiana	Rw1G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1073
AccBSI	CCGCTC	1 cut(s)	23
AciI	CCGC	4 cut(s)	21, 734, 1078, 1304
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	3 cut(s)	136, 498, 1068
AcoI	YGGCCR	4 cut(s)	9, 1296, 1351, 1433
AcsI	RAATTY	1 cut(s)	746
AcuI	CTGAAG	3 cut(s)	314, 1535, 1601
AcyI	GRCGYC	1 cut(s)	611
AfaI	GTAC	1 cut(s)	871
AfiI	CCNNNNNNNGG	4 cut(s)	1073, 1258, 1294, 1528
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	7 cut(s)	154, 785, 827, 1003, 1159, 1406, 1569
AjnI	CCWGG	1 cut(s)	1240
AluBI	AGCT	6 cut(s)	181, 226, 499, 707, 1049, 1349
AluI	AGCT	6 cut(s)	181, 226, 499, 707, 1049, 1349
Alw21I	GWGCWC	1 cut(s)	1552
AlwI	GGATC	3 cut(s)	136, 498, 1068
AoxI	GGCC	5 cut(s)	9, 1237, 1296, 1351, 1433
ApaI	GGGCCC	1 cut(s)	1241
ApeKI	GCWGC	3 cut(s)	661, 1046, 1576
ApoI	RAATTY	1 cut(s)	746
AspS9I	GGNCC	3 cut(s)	1237, 1238, 1285
AsuHPI	GGTGA	4 cut(s)	689, 839, 1106, 1355
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	1285
BaeGI	GKGCMC	1 cut(s)	1241
BalI	TGGCCA	3 cut(s)	1298, 1353, 1435
BanII	GRGCYC	2 cut(s)	1241, 1605
Bbv12I	GWGCWC	1 cut(s)	1552
BbvCI	CCTCAGC	2 cut(s)	1458, 1494
BbvI	GCAGC	3 cut(s)	673, 1058, 1563
BccI	CCATC	9 cut(s)	284, 467, 521, 620, 638, 983, 1091, 1211, 1521
BceAI	ACGGC	2 cut(s)	31, 775
BciT130I	CCWGG	1 cut(s)	1242
BfaI	CTAG	4 cut(s)	227, 449, 573, 833
BisI	GCNGC	6 cut(s)	21, 662, 734, 1047, 1079, 1577
BlpI	GCTNAGC	1 cut(s)	1331
BlsI	GCNGC	6 cut(s)	22, 663, 735, 1048, 1080, 1578
Bme1390I	CCNGG	1 cut(s)	1242
Bme18I	GGWCC	1 cut(s)	1285
BmgT120I	GGNCC	3 cut(s)	1237, 1238, 1285
BmiI	GGNNCC	4 cut(s)	759, 945, 1192, 1239
BmrFI	CCNGG	1 cut(s)	1242
BmsI	GCATC	4 cut(s)	291, 661, 1480, 1524
BpmI	CTGGAG	1 cut(s)	1134
Bpu10I	CCTNAGC	3 cut(s)	182, 1458, 1494
Bpu1102I	GCTNAGC	1 cut(s)	1331
Bpu14I	TTCGAA	1 cut(s)	346
BpuEI	CTTGAG	1 cut(s)	506
Bsa29I	ATCGAT	1 cut(s)	101
BsaHI	GRCGYC	1 cut(s)	611
BsaJI	CCNNGG	3 cut(s)	1240, 1378, 1522
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	639, 669
Bsc4I	CCNNNNNNNGG	4 cut(s)	1073, 1258, 1294, 1528
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	3 cut(s)	61, 252, 1427
BseBI	CCWGG	1 cut(s)	1242
BseCI	ATCGAT	1 cut(s)	101
BseDI	CCNNGG	3 cut(s)	1240, 1378, 1522
BseGI	GGATG	7 cut(s)	295, 478, 628, 994, 1063, 1495, 1532
BseLI	CCNNNNNNNGG	4 cut(s)	1073, 1258, 1294, 1528
BseMII	CTCAG	7 cut(s)	40, 260, 1248, 1280, 1322, 1449, 1485
BseNI	ACTGG	3 cut(s)	61, 252, 1427
BseRI	GAGGAG	5 cut(s)	467, 891, 956, 1475, 1511
BseSI	GKGCMC	1 cut(s)	1241
BseX3I	CGGCCG	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	673, 1058, 1563
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	5 cut(s)	11, 1239, 1298, 1353, 1435
BshVI	ATCGAT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	1552
BsiSI	CCGG	2 cut(s)	12, 32
BslFI	GGGAC	1 cut(s)	1024
BslI	CCNNNNNNNGG	4 cut(s)	1073, 1258, 1294, 1528
BsmFI	GGGAC	1 cut(s)	1024
BsnI	GGCC	5 cut(s)	11, 1239, 1298, 1353, 1435
Bsp119I	TTCGAA	1 cut(s)	346
Bsp120I	GGGCCC	1 cut(s)	1237
Bsp1286I	GDGCHC	3 cut(s)	1241, 1552, 1605
Bsp143I	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
Bsp1720I	GCTNAGC	1 cut(s)	1331
Bsp19I	CCATGG	1 cut(s)	1522
BspACI	CCGC	4 cut(s)	21, 734, 1078, 1304
BspANI	GGCC	5 cut(s)	11, 1239, 1298, 1353, 1435
BspCNI	CTCAG	7 cut(s)	39, 261, 1249, 1281, 1323, 1450, 1486
BspDI	ATCGAT	1 cut(s)	101
BspLI	GGNNCC	4 cut(s)	759, 945, 1192, 1239
BspPI	GGATC	3 cut(s)	136, 498, 1068
BspT104I	TTCGAA	1 cut(s)	346
BsrBI	CCGCTC	1 cut(s)	23
BsrFI	RCCGGY	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	61, 252, 1427
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	3 cut(s)	1240, 1378, 1522
BssMI	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
BssNI	GRCGYC	1 cut(s)	611
BssT1I	CCWWGG	1 cut(s)	1522
Bst2UI	CCWGG	1 cut(s)	1242
Bst4CI	ACNGT	4 cut(s)	41, 68, 823, 1382
BstACI	GRCGYC	1 cut(s)	611
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	4 cut(s)	1351, 1391, 1444, 1552
BstDEI	CTNAG	9 cut(s)	26, 182, 269, 314, 1257, 1289, 1331, 1458, 1494
BstDSI	CCRYGG	2 cut(s)	1378, 1522
BstF5I	GGATG	7 cut(s)	295, 478, 628, 994, 1063, 1495, 1532
BstKTI	GATC	7 cut(s)	131, 328, 339, 448, 493, 801, 1063
BstMBI	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 730, 1432
BstNI	CCWGG	1 cut(s)	1242
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	1240
BstSLI	GKGCMC	1 cut(s)	1241
BstV1I	GCAGC	3 cut(s)	673, 1058, 1563
BstZI	CGGCCG	1 cut(s)	9
Bsu15I	ATCGAT	1 cut(s)	101
BsuRI	GGCC	5 cut(s)	11, 1239, 1298, 1353, 1435
BsuTUI	ATCGAT	1 cut(s)	101
BtgI	CCRYGG	2 cut(s)	1378, 1522
BtsCI	GGATG	7 cut(s)	295, 478, 628, 994, 1063, 1495, 1532
BtsIMutI	CAGTG	2 cut(s)	37, 54
Cac8I	GCNNGC	4 cut(s)	1351, 1391, 1444, 1552
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	1237, 1238, 1285
ClaI	ATCGAT	1 cut(s)	101
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	1 cut(s)	870
CviAII	CATG	6 cut(s)	377, 617, 1207, 1234, 1523, 1573
CviQI	GTAC	1 cut(s)	870
DdeI	CTNAG	9 cut(s)	26, 182, 269, 314, 1257, 1289, 1331, 1458, 1494
DpnI	GATC	7 cut(s)	130, 327, 338, 447, 492, 800, 1062
DpnII	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
EaeI	YGGCCR	4 cut(s)	9, 1296, 1351, 1433
EagI	CGGCCG	1 cut(s)	9
EclXI	CGGCCG	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	1522
Eco24I	GRGCYC	2 cut(s)	1241, 1605
Eco47I	GGWCC	1 cut(s)	1285
Eco52I	CGGCCG	1 cut(s)	9
Eco57I	CTGAAG	3 cut(s)	314, 1535, 1601
EcoO109I	RGGNCCY	1 cut(s)	1238
EcoRII	CCWGG	1 cut(s)	1240
EcoT14I	CCWWGG	1 cut(s)	1522
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	1241, 1605
ErhI	CCWWGG	1 cut(s)	1522
FaeI	CATG	6 cut(s)	380, 620, 1210, 1237, 1526, 1576
FaqI	GGGAC	1 cut(s)	1024
FatI	CATG	6 cut(s)	376, 616, 1206, 1233, 1522, 1572
FauNDI	CATATG	1 cut(s)	512
Fnu4HI	GCNGC	6 cut(s)	21, 662, 734, 1047, 1079, 1577
FokI	GGATG	7 cut(s)	302, 485, 635, 1001, 1050, 1502, 1539
FriOI	GRGCYC	2 cut(s)	1241, 1605
Fsp4HI	GCNGC	6 cut(s)	21, 662, 734, 1047, 1079, 1577
FspBI	CTAG	4 cut(s)	227, 449, 573, 833
GluI	GCNGC	6 cut(s)	21, 662, 734, 1047, 1079, 1577
GsuI	CTGGAG	1 cut(s)	1134
HaeIII	GGCC	5 cut(s)	11, 1239, 1298, 1353, 1435
HapII	CCGG	2 cut(s)	12, 32
HgaI	GACGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	611
Hin1II	CATG	6 cut(s)	380, 620, 1210, 1237, 1526, 1576
HincII	GTYRAC	2 cut(s)	369, 772
HindII	GTYRAC	2 cut(s)	369, 772
HindIII	AAGCTT	2 cut(s)	179, 497
HinfI	GANTC	8 cut(s)	98, 161, 170, 187, 844, 896, 1155, 1366
HpaI	GTTAAC	2 cut(s)	369, 772
HpaII	CCGG	2 cut(s)	12, 32
HphI	GGTGA	4 cut(s)	689, 839, 1106, 1355
Hpy166II	GTNNAC	6 cut(s)	37, 369, 518, 772, 895, 958
Hpy188III	TCNNGA	3 cut(s)	126, 332, 449
Hpy8I	GTNNAC	6 cut(s)	37, 369, 518, 772, 895, 958
Hpy99I	CGWCG	2 cut(s)	10, 94
HpyAV	CCTTC	4 cut(s)	821, 989, 1019, 1520
HpyCH4III	ACNGT	4 cut(s)	41, 68, 823, 1382
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	304, 560, 1046, 1267
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 730, 1432
HpyF3I	CTNAG	9 cut(s)	26, 182, 269, 314, 1257, 1289, 1331, 1458, 1494
HpySE526I	ACGT	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	611
Hsp92II	CATG	6 cut(s)	380, 620, 1210, 1237, 1526, 1576
KspAI	GTTAAC	2 cut(s)	369, 772
Kzo9I	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
LmnI	GCTCC	5 cut(s)	382, 454, 757, 878, 943
Lsp1109I	GCAGC	3 cut(s)	673, 1058, 1563
LweI	GCATC	4 cut(s)	291, 661, 1480, 1524
MaeI	CTAG	4 cut(s)	227, 449, 573, 833
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	6 cut(s)	62, 534, 612, 698, 1382, 1411
MalI	GATC	7 cut(s)	130, 327, 338, 447, 492, 800, 1062
MbiI	CCGCTC	1 cut(s)	23
MboI	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
MboII	GAAGA	8 cut(s)	226, 320, 427, 436, 598, 1181, 1418, 1594
MfeI	CAATTG	1 cut(s)	933
MhlI	GDGCHC	3 cut(s)	1241, 1552, 1605
MlsI	TGGCCA	3 cut(s)	1298, 1353, 1435
MluCI	AATT	7 cut(s)	259, 352, 639, 746, 785, 933, 1185
MluNI	TGGCCA	3 cut(s)	1298, 1353, 1435
MlyI	GAGTC	2 cut(s)	179, 890
MmeI	TCCRAC	4 cut(s)	267, 450, 735, 1000
Mox20I	TGGCCA	3 cut(s)	1298, 1353, 1435
Mph1103I	ATGCAT	1 cut(s)	306
MscI	TGGCCA	3 cut(s)	1298, 1353, 1435
MseI	TTAA	3 cut(s)	368, 771, 927
MslI	CAYNNNNRTG	2 cut(s)	621, 1543
Msp20I	TGGCCA	3 cut(s)	1298, 1353, 1435
MspA1I	CMGCKG	1 cut(s)	736
MspI	CCGG	2 cut(s)	12, 32
MspR9I	CCNGG	1 cut(s)	1242
MunI	CAATTG	1 cut(s)	933
MvaI	CCWGG	1 cut(s)	1242
MwoI	GCNNNNNNNGC	3 cut(s)	17, 730, 1432
NcoI	CCATGG	1 cut(s)	1522
NdeI	CATATG	1 cut(s)	512
NdeII	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
NlaIII	CATG	6 cut(s)	380, 620, 1210, 1237, 1526, 1576
NlaIV	GGNNCC	4 cut(s)	759, 945, 1192, 1239
NmuCI	GTSAC	2 cut(s)	612, 1411
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	620
NspV	TTCGAA	1 cut(s)	346
PciI	ACATGT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 98
PfeI	GAWTC	6 cut(s)	98, 161, 187, 844, 1155, 1366
PflMI	CCANNNNNTGG	1 cut(s)	1073
PkrI	GCNGC	6 cut(s)	22, 663, 735, 1048, 1080, 1578
PleI	GAGTC	2 cut(s)	178, 890
PpsI	GAGTC	2 cut(s)	178, 890
PscI	ACATGT	1 cut(s)	616
Psp1406I	AACGTT	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	1240
PspGI	CCWGG	1 cut(s)	1240
PspN4I	GGNNCC	4 cut(s)	759, 945, 1192, 1239
PspOMI	GGGCCC	1 cut(s)	1237
PspPI	GGNCC	3 cut(s)	1237, 1238, 1285
RsaI	GTAC	1 cut(s)	871
RsaNI	GTAC	1 cut(s)	870
RseI	CAYNNNNRTG	2 cut(s)	621, 1543
SaqAI	TTAA	3 cut(s)	368, 771, 927
SatI	GCNGC	6 cut(s)	21, 662, 734, 1047, 1079, 1577
Sau3AI	GATC	7 cut(s)	128, 325, 336, 445, 490, 798, 1060
Sau96I	GGNCC	3 cut(s)	1237, 1238, 1285
SchI	GAGTC	2 cut(s)	179, 890
ScrFI	CCNGG	1 cut(s)	1242
SduI	GDGCHC	3 cut(s)	1241, 1552, 1605
SfaNI	GCATC	4 cut(s)	291, 661, 1480, 1524
SfuI	TTCGAA	1 cut(s)	346
SinI	GGWCC	1 cut(s)	1285
SmiMI	CAYNNNNRTG	2 cut(s)	621, 1543
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	7 cut(s)	259, 352, 639, 746, 785, 933, 1185
SsiI	CCGC	4 cut(s)	21, 734, 1078, 1304
SspMI	CTAG	4 cut(s)	227, 449, 573, 833
StyD4I	CCNGG	1 cut(s)	1240
StyI	CCWWGG	1 cut(s)	1522
TaaI	ACNGT	4 cut(s)	41, 68, 823, 1382
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	7 cut(s)	92, 101, 131, 164, 263, 346, 1419
TasI	AATT	7 cut(s)	259, 352, 639, 746, 785, 933, 1185
TauI	GCSGC	3 cut(s)	23, 736, 1081
TfiI	GAWTC	6 cut(s)	98, 161, 187, 844, 1155, 1366
Tru1I	TTAA	3 cut(s)	368, 771, 927
Tru9I	TTAA	3 cut(s)	368, 771, 927
TscAI	CASTG	2 cut(s)	44, 61
TseFI	GTSAC	2 cut(s)	612, 1411
TseI	GCWGC	3 cut(s)	661, 1046, 1576
Tsp45I	GTSAC	2 cut(s)	612, 1411
TspDTI	ATGAA	4 cut(s)	831, 1120, 1136, 1195
TspRI	CASTG	2 cut(s)	44, 61
Van91I	CCANNNNNTGG	1 cut(s)	1073
VpaK11BI	GGWCC	1 cut(s)	1285
XapI	RAATTY	1 cut(s)	746
XbaI	TCTAGA	1 cut(s)	448
XceI	RCATGY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XspI	CTAG	4 cut(s)	227, 449, 573, 833
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.