Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010706

Physical Location & Seq

Genomic Coordinates Forward (+)

38455481 .. 38502486

Gene Structure 47006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0272200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGAAGAATCAAGAAAGAGGTACGCGGTTGTTACAGGTTCAAATCAGGGGATTGGATTTGGAACAGTTAAGCAGTTGGCCTCAAATGGGATCATGACAGTGTTAACAGCTTTAGATGAGAAGAAGGGCATTGAAGCGGTTGAAGAATTAAAAGACTCCGGCCTCTCTGACCTTGTTGTTTATCATCAGCTTGATGTAACAGACCCTGCTAGCATTGCTTCCCTTGCAGATTTTGTCAAAACCCGATTTGGGAAACTAGATATCTTGGTAAACAATGCAGGTGTTAGTGGAACCATTACAGATCCTGACGCTTTCAGAAATGCTGTTGCAGCCGCAGGTATGGCTAAGGATGGTGGAGGAGTCAACTGGAGTGAACTAATGACCCAAACATATGATCTAGCTGAAGTATGTGTCGAAACAAACTACTATGGTGCAAAGAAAGTTACCAAAGCATTCCTTCCTCTCCTCCGTCTATCTGATTCACCAAGAATTGTCAGTCTTACTTCTGGCATGGGGACATTACAGCATATACCAAATGAATGGGCCAAAGCAGTGTTAAGTGATGCCGAAATCGTTACAGAAGAGAAAGTAGAGGAGGTCTTAAGTGAGTTTCTAAAGGACTTCAAAGAAGATATGCTTGAAACCAAAGGCTGGCCTCCTACCCCCTCTGCCTATACACTCTCAAAGGCAGCCTTGAATGCATACACCAGAATTGTGGCCAAGAAGTACCCGAAGGTATGCGTCAATTGTGTTGATCCTGGATTTGTTAAAACAGATATGACCTGCAATGCCGGCATCTTATCCATCGATGAGGGTGCTACAAGTGTTGTGAGGTTGGCAATGGCTCCAAATGGCAGTCCTTCAGGTCTATACTTCTATGTACAAGAAGTCTCACCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

300

Amino Acids

32.31

Weight (kDa)

4.93

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	8 - 174	1.2e-22	short chain dehydrogenase
adh_short_C2	PF13561	15 - 98	6.2e-16	Enoyl-(Acyl carrier protein) reductase
adh_short_C2	PF13561	216 - 263	1.9e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010706)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46500 AT2G46500 AT2G46500
fragaria_vesca	FvH4_7g16460 FvH4_7g16460
malus_domestica	MD01G1081200.v1.1 MD07G1150000.v1.1
prunus_persica	Prupe.2G188900_v2.0.a1
pyrus_communis	pycom07g14860
rosa_chinensis	RchiOBHm_Chr1g0359561
rosa_laevigata	RLG00000027862
rosa_multiflora	Rmu_co8470243.1_g000001 Rmu_sc0002556.1_g000019 Rmu_sc0013097.1_g000002
rosa_rugosa	Rorug01G0272200
rosa_samantha	Rh1AG285400 Rh1BG251600 Rh1CG269200 Rh1DG280600
rosa_wichuraiana	Rw1G025380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	3 cut(s)	269, 326, 791
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	26, 137, 333
AclWI	GGATC	3 cut(s)	98, 296, 749
AcoI	YGGCCR	1 cut(s)	717
AcuI	CTGAAG	2 cut(s)	423, 846
AfaI	GTAC	3 cut(s)	23, 728, 882
AfiI	CCNNNNNNNGG	3 cut(s)	87, 249, 651
AflII	CTTAAG	1 cut(s)	601
AgsI	TTSAA	6 cut(s)	42, 134, 143, 625, 641, 697
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	3 cut(s)	110, 190, 401
AluI	AGCT	3 cut(s)	110, 190, 401
Alw26I	GTCTC	1 cut(s)	895
AlwI	GGATC	3 cut(s)	98, 296, 749
AlwNI	CAGNNNCTG	2 cut(s)	206, 305
AoxI	GGCC	5 cut(s)	78, 160, 543, 653, 717
ApeKI	GCWGC	2 cut(s)	329, 689
AspS9I	GGNCC	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	474, 885
AsuNHI	GCTAGC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	719
BbvI	GCAGC	2 cut(s)	341, 701
BccI	CCATC	2 cut(s)	344, 812
BcgI	CGANNNNNNTGC	2 cut(s)	797, 831
BciT130I	CCWGG	1 cut(s)	759
BcoDI	GTCTC	1 cut(s)	895
BfaI	CTAG	3 cut(s)	210, 257, 398
BfrI	CTTAAG	1 cut(s)	601
BfuAI	ACCTGC	3 cut(s)	269, 326, 791
BisI	GCNGC	3 cut(s)	330, 333, 690
BlsI	GCNGC	3 cut(s)	331, 334, 691
Bme1390I	CCNGG	1 cut(s)	759
BmgT120I	GGNCC	1 cut(s)	543
BmiI	GGNNCC	2 cut(s)	292, 846
BmrFI	CCNGG	1 cut(s)	759
BmsI	GCATC	2 cut(s)	553, 804
BmtI	GCTAGC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	388
Bpu10I	CCTNAGC	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	807
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 249, 651
Bse118I	RCCGGY	1 cut(s)	791
Bse1I	ACTGG	1 cut(s)	371
Bse3DI	GCAATG	3 cut(s)	213, 793, 846
BseBI	CCWGG	1 cut(s)	759
BseCI	ATCGAT	1 cut(s)	807
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	3 cut(s)	87, 249, 651
BseMI	GCAATG	3 cut(s)	213, 793, 846
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	3 cut(s)	372, 455, 608
BseXI	GCAGC	2 cut(s)	341, 701
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	5 cut(s)	80, 162, 545, 655, 719
BshVI	ATCGAT	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	159, 792
BslFI	GGGAC	1 cut(s)	529
BslI	CCNNNNNNNGG	3 cut(s)	87, 249, 651
BsmAI	GTCTC	1 cut(s)	895
BsmFI	GGGAC	1 cut(s)	529
BsmI	GAATGC	2 cut(s)	452, 703
BsnI	GGCC	5 cut(s)	80, 162, 545, 655, 719
Bsp1407I	TGTACA	1 cut(s)	880
Bsp143I	GATC	4 cut(s)	90, 301, 394, 754
BspACI	CCGC	3 cut(s)	26, 137, 333
BspANI	GGCC	5 cut(s)	80, 162, 545, 655, 719
BspDI	ATCGAT	1 cut(s)	807
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	2 cut(s)	292, 846
BspMI	ACCTGC	3 cut(s)	269, 326, 791
BspOI	GCTAGC	1 cut(s)	213
BspPI	GGATC	3 cut(s)	98, 296, 749
BspTI	CTTAAG	1 cut(s)	601
BsrDI	GCAATG	3 cut(s)	213, 793, 846
BsrFI	RCCGGY	1 cut(s)	791
BsrGI	TGTACA	1 cut(s)	880
BsrI	ACTGG	1 cut(s)	371
BssAI	RCCGGY	1 cut(s)	791
BssMI	GATC	4 cut(s)	90, 301, 394, 754
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	2 cut(s)	67, 100
Bst6I	CTCTTC	1 cut(s)	576
BstAFI	CTTAAG	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	880
BstC8I	GCNNGC	3 cut(s)	211, 653, 793
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	4 cut(s)	93, 304, 397, 757
BstMAI	GTCTC	1 cut(s)	895
BstMBI	GATC	4 cut(s)	90, 301, 394, 754
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 224, 329, 341, 698, 792
BstNI	CCWGG	1 cut(s)	759
BstSCI	CCNGG	1 cut(s)	757
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	341, 701
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	2 cut(s)	540, 715
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	807
BsuRI	GGCC	5 cut(s)	80, 162, 545, 655, 719
BsuTUI	ATCGAT	1 cut(s)	807
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	105, 558
BveI	ACCTGC	3 cut(s)	269, 326, 791
Cac8I	GCNNGC	3 cut(s)	211, 653, 793
CaiI	CAGNNNCTG	2 cut(s)	206, 305
CciI	TCATGA	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	543
ClaI	ATCGAT	1 cut(s)	807
CseI	GACGC	2 cut(s)	317, 730
Csp6I	GTAC	3 cut(s)	22, 727, 881
CviAII	CATG	2 cut(s)	94, 511
CviQI	GTAC	3 cut(s)	22, 727, 881
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	4 cut(s)	92, 303, 396, 756
DpnII	GATC	4 cut(s)	90, 301, 394, 754
EaeI	YGGCCR	1 cut(s)	717
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
Eco32I	GATATC	1 cut(s)	262
Eco57I	CTGAAG	2 cut(s)	423, 846
EcoRII	CCWGG	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	703
FaeI	CATG	2 cut(s)	97, 514
FalI	AAGNNNNNCTT	6 cut(s)	441, 473, 621, 653, 677, 709
FaqI	GGGAC	1 cut(s)	529
FatI	CATG	2 cut(s)	93, 510
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	330, 333, 690
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	330, 333, 690
FspBI	CTAG	3 cut(s)	210, 257, 398
GluI	GCNGC	3 cut(s)	330, 333, 690
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	5 cut(s)	80, 162, 545, 655, 719
HapII	CCGG	2 cut(s)	159, 792
HgaI	GACGC	2 cut(s)	317, 730
Hin1II	CATG	2 cut(s)	97, 514
HincII	GTYRAC	2 cut(s)	105, 364
HindII	GTYRAC	2 cut(s)	105, 364
HinfI	GANTC	4 cut(s)	8, 155, 360, 479
HpaI	GTTAAC	1 cut(s)	105
HpaII	CCGG	2 cut(s)	159, 792
HphI	GGTGA	2 cut(s)	474, 885
Hpy166II	GTNNAC	4 cut(s)	105, 271, 364, 374
Hpy188I	TCNGA	3 cut(s)	169, 317, 478
Hpy188III	TCNNGA	3 cut(s)	12, 94, 305
Hpy8I	GTNNAC	4 cut(s)	105, 271, 364, 374
HpyAV	CCTTC	4 cut(s)	118, 467, 727, 870
HpyCH4III	ACNGT	2 cut(s)	67, 100
HpyCH4V	TGCA	6 cut(s)	227, 278, 329, 434, 701, 786
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 224, 329, 341, 698, 792
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	97, 514
KroI	GCCGGC	1 cut(s)	791
KroNI	GCCGGC	1 cut(s)	793
KspAI	GTTAAC	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	90, 301, 394, 754
LmnI	GCTCC	1 cut(s)	850
Lsp1109I	GCAGC	2 cut(s)	341, 701
LweI	GCATC	2 cut(s)	553, 804
MaeI	CTAG	3 cut(s)	210, 257, 398
MaeIII	GTNAC	4 cut(s)	31, 196, 442, 574
MalI	GATC	4 cut(s)	92, 303, 396, 756
MboI	GATC	4 cut(s)	90, 301, 394, 754
MboII	GAAGA	5 cut(s)	17, 133, 155, 593, 641
MfeI	CAATTG	1 cut(s)	745
MflI	RGATCY	1 cut(s)	301
MlsI	TGGCCA	1 cut(s)	719
MluCI	AATT	4 cut(s)	146, 489, 711, 745
MluNI	TGGCCA	1 cut(s)	719
MlyI	GAGTC	2 cut(s)	149, 369
Mox20I	TGGCCA	1 cut(s)	719
Mph1103I	ATGCAT	1 cut(s)	703
MroNI	GCCGGC	1 cut(s)	791
MscI	TGGCCA	1 cut(s)	719
MseI	TTAA	7 cut(s)	69, 104, 149, 557, 602, 768, 901
MslI	CAYNNNNRTG	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	719
MspCI	CTTAAG	1 cut(s)	601
MspI	CCGG	2 cut(s)	159, 792
MspR9I	CCNGG	1 cut(s)	759
MunI	CAATTG	1 cut(s)	745
Mva1269I	GAATGC	2 cut(s)	452, 703
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	6 cut(s)	215, 224, 329, 341, 698, 792
NaeI	GCCGGC	1 cut(s)	793
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	4 cut(s)	90, 301, 394, 754
NgoMIV	GCCGGC	1 cut(s)	791
NheI	GCTAGC	1 cut(s)	209
NlaIII	CATG	2 cut(s)	97, 514
NlaIV	GGNNCC	2 cut(s)	292, 846
NsiI	ATGCAT	1 cut(s)	703
PagI	TCATGA	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	269
PctI	GAATGC	2 cut(s)	452, 703
PdiI	GCCGGC	1 cut(s)	793
PfeI	GAWTC	2 cut(s)	8, 479
PflMI	CCANNNNNTGG	1 cut(s)	651
PfoI	TCCNGGA	1 cut(s)	757
PkrI	GCNGC	3 cut(s)	331, 334, 691
PleI	GAGTC	2 cut(s)	149, 368
PpsI	GAGTC	2 cut(s)	149, 368
Psp6I	CCWGG	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	757
PspN4I	GGNNCC	2 cut(s)	292, 846
PspPI	GGNCC	1 cut(s)	543
PstNI	CAGNNNCTG	2 cut(s)	206, 305
PsuI	RGATCY	1 cut(s)	301
RsaI	GTAC	3 cut(s)	23, 728, 882
RsaNI	GTAC	3 cut(s)	22, 727, 881
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	7 cut(s)	69, 104, 149, 557, 602, 768, 901
SatI	GCNGC	3 cut(s)	330, 333, 690
Sau3AI	GATC	4 cut(s)	90, 301, 394, 754
Sau96I	GGNCC	1 cut(s)	543
SchI	GAGTC	2 cut(s)	149, 369
ScrFI	CCNGG	1 cut(s)	759
SfaNI	GCATC	2 cut(s)	553, 804
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	601
SmoI	CTYRAG	1 cut(s)	601
Sse9I	AATT	4 cut(s)	146, 489, 711, 745
SsiI	CCGC	3 cut(s)	26, 137, 333
SspMI	CTAG	3 cut(s)	210, 257, 398
StyD4I	CCNGG	1 cut(s)	757
TaaI	ACNGT	2 cut(s)	67, 100
TaqI	TCGA	2 cut(s)	414, 807
TasI	AATT	4 cut(s)	146, 489, 711, 745
TatI	WGTACW	1 cut(s)	880
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	2 cut(s)	8, 479
Tru1I	TTAA	7 cut(s)	69, 104, 149, 557, 602, 768, 901
Tru9I	TTAA	7 cut(s)	69, 104, 149, 557, 602, 768, 901
TscAI	CASTG	2 cut(s)	105, 558
TseI	GCWGC	2 cut(s)	329, 689
TspDTI	ATGAA	1 cut(s)	552
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	2 cut(s)	105, 558
Van91I	CCANNNNNTGG	1 cut(s)	651
Vha464I	CTTAAG	1 cut(s)	601
XspI	CTAG	3 cut(s)	210, 257, 398
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.