Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
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| Species | Orthologous Gene IDs |
|---|---|
| pyrus_communis | pycom02g04640 |
| rosa_laevigata | RLG00000017768 |
| rosa_multiflora | Rmu_co8491531.1_g000001 |
| rosa_samantha | Rh2AG406700 Rh2DG221000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 224 |
| AclWI | GGATC | 2 cut(s) | 58, 171 |
| AgsI | TTSAA | 1 cut(s) | 87 |
| AjiI | CACGTC | 1 cut(s) | 148 |
| Alw26I | GTCTC | 1 cut(s) | 138 |
| AlwI | GGATC | 2 cut(s) | 58, 171 |
| AoxI | GGCC | 1 cut(s) | 26 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 73 |
| AsuHPI | GGTGA | 1 cut(s) | 129 |
| BbsI | GAAGAC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 18, 41 |
| BcoDI | GTCTC | 1 cut(s) | 138 |
| BfaI | CTAG | 1 cut(s) | 230 |
| BmgBI | CACGTC | 1 cut(s) | 148 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpiI | GAAGAC | 1 cut(s) | 94 |
| BsaJI | CCNNGG | 3 cut(s) | 126, 159, 198 |
| BseDI | CCNNGG | 3 cut(s) | 126, 159, 198 |
| BseGI | GGATG | 3 cut(s) | 29, 112, 139 |
| BseMII | CTCAG | 2 cut(s) | 21, 133 |
| BsgI | GTGCAG | 1 cut(s) | 170 |
| BshFI | GGCC | 1 cut(s) | 28 |
| BsmAI | GTCTC | 1 cut(s) | 138 |
| BsmBI | CGTCTC | 1 cut(s) | 138 |
| BsnI | GGCC | 1 cut(s) | 28 |
| Bsp143I | GATC | 2 cut(s) | 50, 163 |
| BspACI | CCGC | 1 cut(s) | 224 |
| BspANI | GGCC | 1 cut(s) | 28 |
| BspCNI | CTCAG | 2 cut(s) | 22, 134 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BspPI | GGATC | 2 cut(s) | 58, 171 |
| BssECI | CCNNGG | 3 cut(s) | 126, 159, 198 |
| BssMI | GATC | 2 cut(s) | 50, 163 |
| BssT1I | CCWWGG | 3 cut(s) | 126, 159, 198 |
| Bst4CI | ACNGT | 1 cut(s) | 63 |
| BstDEI | CTNAG | 2 cut(s) | 30, 142 |
| BstF5I | GGATG | 3 cut(s) | 29, 112, 139 |
| BstKTI | GATC | 2 cut(s) | 53, 166 |
| BstMAI | GTCTC | 1 cut(s) | 138 |
| BstMBI | GATC | 2 cut(s) | 50, 163 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 201, 223 |
| BstV2I | GAAGAC | 1 cut(s) | 94 |
| BstX2I | RGATCY | 1 cut(s) | 50 |
| BstYI | RGATCY | 1 cut(s) | 50 |
| BsuRI | GGCC | 1 cut(s) | 28 |
| BtrI | CACGTC | 1 cut(s) | 148 |
| BtsCI | GGATG | 3 cut(s) | 29, 112, 139 |
| BtsIMutI | CAGTG | 1 cut(s) | 139 |
| CciI | TCATGA | 1 cut(s) | 166 |
| CviAII | CATG | 1 cut(s) | 167 |
| CviJI | RGCY | 2 cut(s) | 28, 204 |
| CviKI_1 | RGCY | 2 cut(s) | 28, 204 |
| DdeI | CTNAG | 2 cut(s) | 30, 142 |
| DpnI | GATC | 2 cut(s) | 52, 165 |
| DpnII | GATC | 2 cut(s) | 50, 163 |
| Eco130I | CCWWGG | 3 cut(s) | 126, 159, 198 |
| EcoT14I | CCWWGG | 3 cut(s) | 126, 159, 198 |
| ErhI | CCWWGG | 3 cut(s) | 126, 159, 198 |
| Esp3I | CGTCTC | 1 cut(s) | 138 |
| FaeI | CATG | 1 cut(s) | 170 |
| FaiI | YATR | 2 cut(s) | 168, 207 |
| FatI | CATG | 1 cut(s) | 166 |
| FokI | GGATG | 3 cut(s) | 36, 119, 146 |
| FspBI | CTAG | 1 cut(s) | 230 |
| HaeIII | GGCC | 1 cut(s) | 28 |
| Hin1II | CATG | 1 cut(s) | 170 |
| HinfI | GANTC | 1 cut(s) | 38 |
| HphI | GGTGA | 1 cut(s) | 129 |
| Hpy166II | GTNNAC | 1 cut(s) | 139 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 179 |
| Hpy188III | TCNNGA | 2 cut(s) | 15, 167 |
| Hpy8I | GTNNAC | 1 cut(s) | 139 |
| HpyAV | CCTTC | 1 cut(s) | 14 |
| HpyCH4III | ACNGT | 1 cut(s) | 63 |
| HpyCH4IV | ACGT | 1 cut(s) | 147 |
| HpyCH4V | TGCA | 2 cut(s) | 151, 217 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 201, 223 |
| HpyF3I | CTNAG | 2 cut(s) | 30, 142 |
| HpySE526I | ACGT | 1 cut(s) | 147 |
| Hsp92II | CATG | 1 cut(s) | 170 |
| Kzo9I | GATC | 2 cut(s) | 50, 163 |
| LmnI | GCTCC | 1 cut(s) | 200 |
| LpnPI | CCDG | 3 cut(s) | 28, 42, 137 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 1 cut(s) | 230 |
| MaeII | ACGT | 1 cut(s) | 147 |
| MalI | GATC | 2 cut(s) | 52, 165 |
| MboI | GATC | 2 cut(s) | 50, 163 |
| MboII | GAAGA | 2 cut(s) | 45, 99 |
| MfeI | CAATTG | 1 cut(s) | 184 |
| MflI | RGATCY | 1 cut(s) | 50 |
| MluCI | AATT | 1 cut(s) | 184 |
| MlyI | GAGTC | 1 cut(s) | 47 |
| MroXI | GAANNNNTTC | 1 cut(s) | 73 |
| MunI | CAATTG | 1 cut(s) | 184 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 201, 223 |
| NdeII | GATC | 2 cut(s) | 50, 163 |
| NlaIII | CATG | 1 cut(s) | 170 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PdmI | GAANNNNTTC | 1 cut(s) | 73 |
| PleI | GAGTC | 1 cut(s) | 46 |
| PpsI | GAGTC | 1 cut(s) | 46 |
| PsuI | RGATCY | 1 cut(s) | 50 |
| Sau3AI | GATC | 2 cut(s) | 50, 163 |
| SchI | GAGTC | 1 cut(s) | 47 |
| SetI | ASST | 2 cut(s) | 150, 176 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| Sse9I | AATT | 1 cut(s) | 184 |
| SsiI | CCGC | 1 cut(s) | 224 |
| SspMI | CTAG | 1 cut(s) | 230 |
| StyI | CCWWGG | 3 cut(s) | 126, 159, 198 |
| TaaI | ACNGT | 1 cut(s) | 63 |
| TaiI | ACGT | 1 cut(s) | 150 |
| TasI | AATT | 1 cut(s) | 184 |
| TscAI | CASTG | 1 cut(s) | 146 |
| TspDTI | ATGAA | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 146 |
| XmnI | GAANNNNTTC | 1 cut(s) | 73 |
| XspI | CTAG | 1 cut(s) | 230 |