Rh2AG406700

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0021252
Physical Location & Seq
Forward (+)
60559991 .. 60560682
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG406700.1

Sequence Viewer

Length: 261 bp
ATGAATGGCTGTGATTCAGGGCAGTGCAGTTCTAATGGATTTCCAGAGAAGGATGGCCTGAGTGAGAGTCGGTTGATGGATCTTCTCCACGGTTCTGAATACGTGCTTACTTTTGAAGACAAGGACGATGACTGGATGCTTGTTGGTGATGTTCCTTGGGGGATGTTCACTGAGACGTGTAGGAAACTAAGGATCATGAAAGGTTCAGAAGCAATTGGACTTGCTCCAAGGGCTATGGAGAAGTGCAAGAACCGCAACTAG

Protein Analysis

86

Amino Acids

9.65

Weight (kDa)

4.86

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AUX_IAA PF02309 6 - 77 7.9e-36 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021252)

Species Orthologous Gene IDs
pyrus_communis pycom02g04640
rosa_laevigata RLG00000017768
rosa_multiflora Rmu_co8491531.1_g000001
rosa_samantha Rh2AG406700 Rh2DG221000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 253
AclWI GGATC 2 cut(s) 87, 200
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 116
AjiI CACGTC 1 cut(s) 177
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 2 cut(s) 87, 200
AoxI GGCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 123
BccI CCATC 2 cut(s) 47, 70
BcoDI GTCTC 1 cut(s) 167
BfaI CTAG 1 cut(s) 259
BmgBI CACGTC 1 cut(s) 177
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 123
BsaAI YACGTR 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 88, 155, 227
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 88, 155, 227
BseGI GGATG 3 cut(s) 58, 141, 168
BseMII CTCAG 2 cut(s) 50, 162
BseNI ACTGG 1 cut(s) 137
BsgI GTGCAG 1 cut(s) 46
BshFI GGCC 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 167
BsmBI CGTCTC 1 cut(s) 167
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 2 cut(s) 79, 192
BspACI CCGC 1 cut(s) 253
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 51, 163
BspHI TCATGA 1 cut(s) 195
BspPI GGATC 2 cut(s) 87, 200
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 3 cut(s) 88, 155, 227
BssMI GATC 2 cut(s) 79, 192
BssT1I CCWWGG 2 cut(s) 155, 227
Bst4CI ACNGT 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 103
BstDEI CTNAG 3 cut(s) 59, 171, 188
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 3 cut(s) 58, 141, 168
BstKTI GATC 2 cut(s) 82, 195
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 2 cut(s) 79, 192
BstMWI GCNNNNNNNGC 2 cut(s) 230, 252
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 88
BtrI CACGTC 1 cut(s) 177
BtsCI GGATG 3 cut(s) 58, 141, 168
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 2 cut(s) 29, 168
CciI TCATGA 1 cut(s) 195
CviAII CATG 1 cut(s) 196
CviJI RGCY 3 cut(s) 9, 57, 233
CviKI_1 RGCY 3 cut(s) 9, 57, 233
DdeI CTNAG 3 cut(s) 59, 171, 188
DpnI GATC 2 cut(s) 81, 194
DpnII GATC 2 cut(s) 79, 192
Eco130I CCWWGG 2 cut(s) 155, 227
EcoT14I CCWWGG 2 cut(s) 155, 227
ErhI CCWWGG 2 cut(s) 155, 227
Esp3I CGTCTC 1 cut(s) 167
FaeI CATG 1 cut(s) 199
FaiI YATR 2 cut(s) 197, 236
FatI CATG 1 cut(s) 195
FokI GGATG 3 cut(s) 65, 148, 175
FspBI CTAG 1 cut(s) 259
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 1 cut(s) 199
HinfI GANTC 2 cut(s) 14, 67
HphI GGTGA 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 2 cut(s) 97, 208
Hpy188III TCNNGA 2 cut(s) 44, 196
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 92
HpyCH4IV ACGT 2 cut(s) 102, 176
HpyCH4V TGCA 2 cut(s) 27, 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 252
HpyF3I CTNAG 3 cut(s) 59, 171, 188
HpySE526I ACGT 2 cut(s) 102, 176
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 2 cut(s) 79, 192
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 4 cut(s) 3, 57, 71, 118
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 259
MaeII ACGT 2 cut(s) 102, 176
MalI GATC 2 cut(s) 81, 194
MboI GATC 2 cut(s) 79, 192
MboII GAAGA 2 cut(s) 74, 128
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 1 cut(s) 79
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 76
MunI CAATTG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 230, 252
NdeII GATC 2 cut(s) 79, 192
NlaIII CATG 1 cut(s) 199
PagI TCATGA 1 cut(s) 195
PfeI GAWTC 1 cut(s) 14
PleI GAGTC 1 cut(s) 75
PpsI GAGTC 1 cut(s) 75
Ppu21I YACGTR 1 cut(s) 103
PsuI RGATCY 1 cut(s) 79
Sau3AI GATC 2 cut(s) 79, 192
SchI GAGTC 1 cut(s) 76
SetI ASST 3 cut(s) 105, 179, 205
SfaNI GCATC 1 cut(s) 126
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 253
SspMI CTAG 1 cut(s) 259
StyI CCWWGG 2 cut(s) 155, 227
TaaI ACNGT 1 cut(s) 92
TaiI ACGT 2 cut(s) 105, 179
TasI AATT 1 cut(s) 213
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 2 cut(s) 29, 175
TspDTI ATGAA 2 cut(s) 17, 212
TspRI CASTG 2 cut(s) 29, 175
XspI CTAG 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.