Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8503595.1

Orthogroup ID

OG0014780

Physical Location & Seq

Genomic Coordinates Reverse (-)

1503 .. 2732

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8503595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggacagcaaatatagtgcttcatcgactgacttcaaaggcggtttcagcaaatcacaatgttcggtaactttctcagccgagagcaatgctaatatgacctcctcctcacttgttgtcctctccagccctgtggtcaatggattgaactttgaggagttgctcaaagctcctgctgagatgcttggaagaggcaagcatggtagcctgtacaaggtcatcattgattatggggcgacccttgttgtcaaaaggattaaagattggacgatttcgactaatgatttcaagctgaggatgcagaggttagaccaagccaagcaccctaatgtattgtctgctcttgccttctactcctccagacaagaaaagcttctggtctatgaatatcagtacaatggaagccttttcaagctcatacacggaaaccaagggggcaaagcctttggctggactagcagactttcttgtgcagcaaccattgccgacacattagcttttatgcatgaggatcttcaaaaagatgggattgttcatggcaacttaaaatcttcgaacattttgttgaacaagaacatggagccttgcataagcgagtatggtcttatgaagatcaacgatcttgataatatattgccggggaaggtgtctgcttccagtagtgcttctaccacatttaaagcagacatttatgggtttggtgtgattcttcttgagctacttacaggcaaacttgtacagcacaacggagttgacttgacatcttgggttcactcggtggttcgagaggaatggacagcagaagtgtttgacaagtccttatattcggaaggtgcaagcgaggagaggatggtgaacttgctccaagtggctataaagtgtgtcaaccgttctccagaggccagaccgagcatgaaacaagttgctaccatgatcaataccataaaagaggatgaagacaaatccacattctttgatgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

327

Amino Acids

36.16

Weight (kDa)

6.67

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014780)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g50440
malus_domestica	MD09G1036300.v1.1 MD17G1037900.v1.1
prunus_persica	Prupe.3G281400_v2.0.a1
pyrus_communis	pycom111g02910
rosa_chinensis	RchiOBHm_Chr2g0170861
rosa_laevigata	RLG00000021987
rosa_multiflora	Rmu_co8503595.1_g000001 Rmu_sc0009938.1_g000006 Rmu_sc0042424.1_g000001
rosa_roxburghii	Rroxscaffold_2G00081010
rosa_rugosa	Rorug02G0551800
rosa_samantha	Rh2AG624600 Rh2BG635200 Rh2CG604000 Rh2DG646800
rosa_wichuraiana	Rw2G051740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AclWI	GGATC	1 cut(s)	519
AdeI	CACNNNGTG	1 cut(s)	778
AfaI	GTAC	3 cut(s)	212, 395, 738
AfiI	CCNNNNNNNGG	2 cut(s)	214, 450
AgsI	TTSAA	6 cut(s)	37, 148, 289, 412, 518, 568
AluBI	AGCT	6 cut(s)	170, 292, 373, 415, 497, 718
AluI	AGCT	6 cut(s)	170, 292, 373, 415, 497, 718
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	1 cut(s)	900
ApeKI	GCWGC	1 cut(s)	473
Asp700I	GAANNNNTTC	1 cut(s)	372
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	865
AsuII	TTCGAA	1 cut(s)	554
BbsI	GAAGAC	1 cut(s)	963
BbvCI	CCTCAGC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	485
BccI	CCATC	2 cut(s)	518, 844
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BclI	TGATCA	1 cut(s)	933
BcnI	CCSGG	1 cut(s)	639
BfaI	CTAG	1 cut(s)	456
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	639
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	1 cut(s)	639
BmsI	GCATC	2 cut(s)	171, 288
BpiI	GAAGAC	1 cut(s)	963
BpmI	CTGGAG	3 cut(s)	109, 343, 879
Bpu10I	CCTNAGC	1 cut(s)	293
Bpu14I	TTCGAA	1 cut(s)	554
BpuEI	CTTGAG	1 cut(s)	734
BpuMI	CCSGG	1 cut(s)	639
BsaJI	CCNNGG	2 cut(s)	430, 638
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 450
Bse1I	ACTGG	1 cut(s)	657
Bse3DI	GCAATG	2 cut(s)	94, 480
BseDI	CCNNGG	2 cut(s)	430, 638
BseGI	GGATG	3 cut(s)	303, 855, 958
BseLI	CCNNNNNNNGG	2 cut(s)	214, 450
BseMI	GCAATG	2 cut(s)	94, 480
BseMII	CTCAG	3 cut(s)	90, 168, 284
BseNI	ACTGG	1 cut(s)	657
BseRI	GAGGAG	5 cut(s)	94, 97, 170, 346, 857
BseXI	GCAGC	1 cut(s)	485
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	1 cut(s)	902
BsiSI	CCGG	1 cut(s)	638
BslI	CCNNNNNNNGG	2 cut(s)	214, 450
BsnI	GGCC	1 cut(s)	902
Bsp119I	TTCGAA	1 cut(s)	554
Bsp1407I	TGTACA	2 cut(s)	210, 736
Bsp143I	GATC	4 cut(s)	511, 612, 619, 933
BspACI	CCGC	1 cut(s)	42
BspANI	GGCC	1 cut(s)	902
BspCNI	CTCAG	3 cut(s)	89, 169, 285
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	1 cut(s)	519
BspT104I	TTCGAA	1 cut(s)	554
BsrDI	GCAATG	2 cut(s)	94, 480
BsrGI	TGTACA	2 cut(s)	210, 736
BsrI	ACTGG	1 cut(s)	657
BssECI	CCNNGG	2 cut(s)	430, 638
BssMI	GATC	4 cut(s)	511, 612, 619, 933
BssT1I	CCWWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	890
Bst6I	CTCTTC	1 cut(s)	184
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstAUI	TGTACA	2 cut(s)	210, 736
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	197, 838
BstDEI	CTNAG	3 cut(s)	76, 177, 293
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	3 cut(s)	303, 855, 958
BstKTI	GATC	4 cut(s)	514, 615, 622, 936
BstMBI	GATC	4 cut(s)	511, 612, 619, 933
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 298, 456, 482
BstSCI	CCNGG	1 cut(s)	637
BstV1I	GCAGC	1 cut(s)	485
BstV2I	GAAGAC	1 cut(s)	963
BstX2I	RGATCY	1 cut(s)	511
BstXI	CCANNNNNNTGG	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	511
BsuRI	GGCC	1 cut(s)	902
BtsCI	GGATG	3 cut(s)	303, 855, 958
Cac8I	GCNNGC	2 cut(s)	197, 838
Csp6I	GTAC	3 cut(s)	211, 394, 737
CspCI	CAANNNNNGTGG	1 cut(s)	955
CviAII	CATG	6 cut(s)	200, 506, 536, 577, 913, 931
CviQI	GTAC	3 cut(s)	211, 394, 737
DdeI	CTNAG	3 cut(s)	76, 177, 293
DpnI	GATC	4 cut(s)	513, 614, 621, 935
DpnII	GATC	4 cut(s)	511, 612, 619, 933
DraI	TTTAAA	1 cut(s)	679
DraIII	CACNNNGTG	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	430
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	430
EcoT22I	ATGCAT	1 cut(s)	507
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	6 cut(s)	203, 509, 539, 580, 916, 934
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	6 cut(s)	199, 505, 535, 576, 912, 930
FbaI	TGATCA	1 cut(s)	933
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	3 cut(s)	310, 862, 965
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	456
GluI	GCNGC	1 cut(s)	474
GsuI	CTGGAG	3 cut(s)	109, 343, 879
HaeIII	GGCC	1 cut(s)	902
HapII	CCGG	1 cut(s)	638
Hin1II	CATG	6 cut(s)	203, 509, 539, 580, 916, 934
HincII	GTYRAC	2 cut(s)	754, 886
HindII	GTYRAC	2 cut(s)	754, 886
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	1 cut(s)	706
HpaII	CCGG	1 cut(s)	638
HphI	GGTGA	1 cut(s)	865
Hpy166II	GTNNAC	4 cut(s)	754, 772, 856, 886
Hpy188I	TCNGA	1 cut(s)	829
Hpy188III	TCNNGA	5 cut(s)	360, 623, 713, 785, 896
Hpy8I	GTNNAC	4 cut(s)	754, 772, 856, 886
HpyAV	CCTTC	3 cut(s)	358, 637, 824
HpyCH4III	ACNGT	1 cut(s)	890
HpyCH4V	TGCA	5 cut(s)	301, 473, 505, 588, 836
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 298, 456, 482
HpyF3I	CTNAG	3 cut(s)	76, 177, 293
Hsp92II	CATG	6 cut(s)	203, 509, 539, 580, 916, 934
Ksp22I	TGATCA	1 cut(s)	933
Kzo9I	GATC	4 cut(s)	511, 612, 619, 933
LmnI	GCTCC	3 cut(s)	175, 580, 867
Lsp1109I	GCAGC	1 cut(s)	485
LweI	GCATC	2 cut(s)	171, 288
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	4 cut(s)	513, 614, 621, 935
MboI	GATC	4 cut(s)	511, 612, 619, 933
MboII	GAAGA	6 cut(s)	201, 506, 543, 622, 701, 968
MflI	RGATCY	1 cut(s)	511
Mph1103I	ATGCAT	1 cut(s)	507
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	258, 545, 678
MslI	CAYNNNNRTG	1 cut(s)	327
MspI	CCGG	1 cut(s)	638
MspR9I	CCNGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	4 cut(s)	48, 298, 456, 482
NciI	CCSGG	1 cut(s)	639
NdeII	GATC	4 cut(s)	511, 612, 619, 933
NlaIII	CATG	6 cut(s)	203, 509, 539, 580, 916, 934
NlaIV	GGNNCC	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	507
NspV	TTCGAA	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	706
PkrI	GCNGC	1 cut(s)	475
PspN4I	GGNNCC	1 cut(s)	582
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	3 cut(s)	212, 395, 738
RsaNI	GTAC	3 cut(s)	211, 394, 737
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	258, 545, 678
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	4 cut(s)	511, 612, 619, 933
ScrFI	CCNGG	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	171, 288
SfuI	TTCGAA	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	713
SmoI	CTYRAG	1 cut(s)	713
SsiI	CCGC	1 cut(s)	42
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	1 cut(s)	890
TaqI	TCGA	4 cut(s)	26, 275, 554, 784
TaqII	GACCGA	1 cut(s)	922
TatI	WGTACW	3 cut(s)	210, 393, 736
TfiI	GAWTC	1 cut(s)	706
Tru1I	TTAA	3 cut(s)	258, 545, 678
Tru9I	TTAA	3 cut(s)	258, 545, 678
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	6 cut(s)	12, 399, 524, 623, 929, 969
TspGWI	ACGGA	2 cut(s)	438, 762
XagI	CCTNNNNNAGG	1 cut(s)	212
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.