Rmu_sc0000029.1_g000054

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000029.1
OG0021290
Physical Location & Seq
Forward (+)
234378 .. 235289
912 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000029.1_g000054.1.cds

Sequence Viewer

Length: 543 bp
atgtcgaatgaacctagactcgactttcccatgcttgactcaataggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaggcacctaacccggatcttgtgttcgtgcgaacacctgcaaagcatgctcaagcacttatcttgatgcgacgccatatggaaaaggcactcagattagagtatatgtcgatcaagaatgccagagagctatgggtagcactagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaacctgcgccttgctgatttcaagtctgaagaaaaccgcaagtttggtgtggatacacgtggtggtaatgccacacgtgggagagggggtcgtggtatccctaaccttaatggtggcgccatgggtcgtggtggtggcaccaaccctcctagggaactcccgcaacgtgcacaacgtgcacctcaattaaagggaggcaaccataatgatgagtgtcattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

180

Amino Acids

20.18

Weight (kDa)

9.45

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021290)

Species Orthologous Gene IDs
pyrus_communis pycom72g00050
rosa_chinensis RchiOBHm_Chr1g0380361
rosa_multiflora Rmu_sc0000029.1_g000054 Rmu_sc0000256.1_g000009 Rmu_sc0004062.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 163
Acc36I ACCTGC 2 cut(s) 163, 333
AccB1I GGYRCC 3 cut(s) 121, 437, 458
AciI CCGC 2 cut(s) 358, 482
AclWI GGATC 1 cut(s) 141
AcuI CTGAAG 1 cut(s) 369
AcvI CACGTG 2 cut(s) 380, 398
AcyI GRCGYC 2 cut(s) 190, 438
AdeI CACNNNGTG 2 cut(s) 383, 497
AfeI AGCGCT 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 64, 399, 472
AflIII ACRYGT 2 cut(s) 377, 395
AgsI TTSAA 4 cut(s) 96, 307, 314, 343
AjnI CCWGG 1 cut(s) 117
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 247
AluI AGCT 1 cut(s) 247
Alw21I GWGCWC 2 cut(s) 493, 502
Alw44I GTGCAC 2 cut(s) 489, 498
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 1 cut(s) 269
ApaLI GTGCAC 2 cut(s) 489, 498
AspA2I CCTAGG 1 cut(s) 470
AspLEI GCGC 3 cut(s) 270, 330, 440
AsuC2I CCSGG 1 cut(s) 131
AvrII CCTAGG 1 cut(s) 470
BaeGI GKGCMC 2 cut(s) 493, 502
BanI GGYRCC 3 cut(s) 121, 437, 458
BbrPI CACGTG 2 cut(s) 380, 398
Bbv12I GWGCWC 2 cut(s) 493, 502
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 119
BciVI GTATCC 2 cut(s) 367, 428
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 3 cut(s) 15, 260, 471
BfoI RGCGCY 2 cut(s) 271, 441
BfuAI ACCTGC 2 cut(s) 163, 333
BfuI GTATCC 2 cut(s) 367, 428
BlnI CCTAGG 1 cut(s) 470
Bme1390I CCNGG 2 cut(s) 119, 131
BmiI GGNNCC 3 cut(s) 123, 439, 460
BmrFI CCNGG 2 cut(s) 119, 131
BmsI GCATC 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 2 cut(s) 380, 398
BsaHI GRCGYC 2 cut(s) 190, 438
BsaJI CCNNGG 2 cut(s) 441, 470
BsaXI ACNNNNNCTCC 4 cut(s) 394, 424, 451, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 399, 472
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 441, 470
BseLI CCNNNNNNNGG 3 cut(s) 64, 399, 472
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 2 cut(s) 493, 502
BshNI GGYRCC 3 cut(s) 121, 437, 458
BsiHKAI GWGCWC 2 cut(s) 493, 502
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 3 cut(s) 64, 399, 472
BsmI GAATGC 1 cut(s) 241
Bsp1286I GDGCHC 2 cut(s) 493, 502
Bsp143I GATC 2 cut(s) 133, 228
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 2 cut(s) 358, 482
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 123, 439, 460
BspMI ACCTGC 2 cut(s) 163, 333
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 3 cut(s) 121, 437, 458
BsrDI GCAATG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 441, 470
BssMI GATC 2 cut(s) 133, 228
BssNI GRCGYC 2 cut(s) 190, 438
BssT1I CCWWGG 2 cut(s) 441, 470
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 2 cut(s) 190, 438
BstAPI GCANNNNNTGC 2 cut(s) 164, 497
BstBAI YACGTR 2 cut(s) 380, 398
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 1 cut(s) 441
BstEII GGTNACC 1 cut(s) 67
BstH2I RGCGCY 2 cut(s) 271, 441
BstHHI GCGC 3 cut(s) 270, 330, 440
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstMWI GCNNNNNNNGC 2 cut(s) 164, 497
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 117, 129
BstSLI GKGCMC 2 cut(s) 493, 502
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BsuI GTATCC 2 cut(s) 367, 428
BtgI CCRYGG 1 cut(s) 441
BveI ACCTGC 2 cut(s) 163, 333
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 3 cut(s) 270, 330, 440
CseI GACGC 1 cut(s) 198
CviAII CATG 3 cut(s) 31, 164, 442
CviJI RGCY 2 cut(s) 48, 247
CviKI_1 RGCY 2 cut(s) 48, 247
DdeI CTNAG 1 cut(s) 209
DinI GGCGCC 1 cut(s) 439
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
DraIII CACNNNGTG 2 cut(s) 383, 497
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 441, 470
Eco47III AGCGCT 1 cut(s) 269
Eco57I CTGAAG 1 cut(s) 369
Eco72I CACGTG 2 cut(s) 380, 398
Eco91I GGTNACC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 441, 470
EgeI GGCGCC 1 cut(s) 439
EheI GGCGCC 1 cut(s) 439
ErhI CCWWGG 2 cut(s) 441, 470
FaeI CATG 3 cut(s) 34, 167, 445
FatI CATG 3 cut(s) 30, 163, 441
FauI CCCGC 1 cut(s) 489
FauNDI CATATG 1 cut(s) 195
FspBI CTAG 3 cut(s) 15, 260, 471
GlaI GCGC 3 cut(s) 269, 329, 439
HaeII RGCGCY 2 cut(s) 271, 441
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 198
HhaI GCGC 3 cut(s) 270, 330, 440
Hin1I GRCGYC 2 cut(s) 190, 438
Hin1II CATG 3 cut(s) 34, 167, 445
Hin6I GCGC 3 cut(s) 268, 328, 438
HinP1I GCGC 3 cut(s) 268, 328, 438
HinfI GANTC 3 cut(s) 18, 38, 287
HpaII CCGG 1 cut(s) 131
Hpy166II GTNNAC 2 cut(s) 491, 500
Hpy188I TCNGA 3 cut(s) 52, 212, 349
Hpy188III TCNNGA 2 cut(s) 181, 232
Hpy8I GTNNAC 2 cut(s) 491, 500
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 1 cut(s) 301
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 4 cut(s) 379, 397, 487, 496
HpyCH4V TGCA 3 cut(s) 158, 491, 500
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 497
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 4 cut(s) 379, 397, 487, 496
Hsp92I GRCGYC 2 cut(s) 190, 438
Hsp92II CATG 3 cut(s) 34, 167, 445
HspAI GCGC 3 cut(s) 268, 328, 438
KasI GGCGCC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 133, 228
LguI GCTCTTC 1 cut(s) 258
LpnPI CCDG 7 cut(s) 104, 131, 144, 168, 253, 312, 338
LweI GCATC 1 cut(s) 174
MaeI CTAG 3 cut(s) 15, 260, 471
MaeII ACGT 4 cut(s) 379, 397, 487, 496
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 2 cut(s) 275, 362
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 493, 502
MluCI AATT 1 cut(s) 506
Mly113I GGCGCC 1 cut(s) 438
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 6 cut(s) 302, 305, 398, 477, 509, 513
MseI TTAA 2 cut(s) 429, 509
MslI CAYNNNNRTG 1 cut(s) 528
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 119, 131
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 164, 497
NarI GGCGCC 1 cut(s) 438
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 441
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 3 cut(s) 34, 167, 445
NlaIV GGNNCC 3 cut(s) 123, 439, 460
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PaqCI CACCTGC 1 cut(s) 163
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 287
PleI GAGTC 2 cut(s) 12, 32
PluTI GGCGCC 1 cut(s) 441
PmaCI CACGTG 2 cut(s) 380, 398
PmlI CACGTG 2 cut(s) 380, 398
PpsI GAGTC 2 cut(s) 12, 32
Ppu21I YACGTR 2 cut(s) 380, 398
Psp6I CCWGG 1 cut(s) 117
PspCI CACGTG 2 cut(s) 380, 398
PspEI GGTNACC 1 cut(s) 67
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 123, 439, 460
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 2 cut(s) 429, 509
Sau3AI GATC 2 cut(s) 133, 228
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 2 cut(s) 119, 131
SduI GDGCHC 2 cut(s) 493, 502
SfaNI GCATC 1 cut(s) 174
SfoI GGCGCC 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 528
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 506
SsiI CCGC 2 cut(s) 358, 482
SspDI GGCGCC 1 cut(s) 437
SspI AATATT 1 cut(s) 105
SspMI CTAG 3 cut(s) 15, 260, 471
StyD4I CCNGG 2 cut(s) 117, 129
StyI CCWWGG 2 cut(s) 441, 470
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 4 cut(s) 382, 400, 490, 499
TaqI TCGA 3 cut(s) 5, 21, 227
TasI AATT 1 cut(s) 506
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 429, 509
Tru9I TTAA 2 cut(s) 429, 509
TspDTI ATGAA 1 cut(s) 24
VneI GTGCAC 2 cut(s) 489, 498
XceI RCATGY 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 470
XspI CTAG 3 cut(s) 15, 260, 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.