Rmu_sc0004062.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004062.1
OG0021290
Physical Location & Seq
Reverse (-)
40113 .. 41229
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004062.1_g000007.1.cds

Sequence Viewer

Length: 696 bp
atgtcgaatgaacctagactcgactttcccatgcttgactcaacaggctcggattaccacagttgggtaaccgatgttgagaaccatctcacttcaaagggaatattacccataatccaagcacctaacccggatcttgtgttcgtgcgaacacctacaaagcatgctcaagcagttatcttgatacgacgccatatggacaaggcactcagattggagtatatgtcgatcaaggatgcaagagagctatgggtagcgctagaagagcgctttggcaatgtccaagattccctcctccctgacttgaaggttcaatggaacaaactgcgctttgctgatttcaagtctgaaggaaaccgcaagtttgatgtggatacacgtggtggtaatgccacacgtagaatagggggtcgtggtatctctagctgtaatggtggcgccatgggttgtggtggtggcaccaaccctcctagggaacatccacaacgtgcacaacgtgcacctcaattaaagggaggcaaccacaatgatgcaagtgagcaactagctgcaagatatagggcatacagggacctgagggagcaagaagtgtaccttgcagaagaagaagaagatggtggtggagatgtcaatctcaccataaaggacttcaaagctgaagatgaagtgcacaaggatgcagcagactttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

231

Amino Acids

25.97

Weight (kDa)

5.7

Isoelectric Point (pI)

41.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021290)

Species Orthologous Gene IDs
pyrus_communis pycom72g00050
rosa_chinensis RchiOBHm_Chr1g0380361
rosa_multiflora Rmu_sc0000029.1_g000054 Rmu_sc0000256.1_g000009 Rmu_sc0004062.1_g000007

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 437, 458
AciI CCGC 1 cut(s) 358
AclWI GGATC 1 cut(s) 141
AcuI CTGAAG 2 cut(s) 369, 678
AcvI CACGTG 1 cut(s) 380
AcyI GRCGYC 2 cut(s) 190, 438
AdeI CACNNNGTG 3 cut(s) 383, 488, 497
AfaI GTAC 1 cut(s) 593
AfeI AGCGCT 2 cut(s) 258, 269
AfiI CCNNNNNNNGG 2 cut(s) 64, 472
AflIII ACRYGT 2 cut(s) 377, 395
AgsI TTSAA 5 cut(s) 96, 307, 314, 343, 652
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 4 cut(s) 247, 426, 548, 656
AluI AGCT 4 cut(s) 247, 426, 548, 656
Alw21I GWGCWC 3 cut(s) 493, 502, 672
Alw44I GTGCAC 3 cut(s) 489, 498, 668
AlwI GGATC 1 cut(s) 141
Aor51HI AGCGCT 2 cut(s) 258, 269
ApaLI GTGCAC 3 cut(s) 489, 498, 668
ApeKI GCWGC 2 cut(s) 548, 680
AspA2I CCTAGG 1 cut(s) 470
AspLEI GCGC 4 cut(s) 259, 270, 330, 440
AspS9I GGNCC 1 cut(s) 571
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 571
AvrII CCTAGG 1 cut(s) 470
AxyI CCTNAGG 1 cut(s) 575
BaeGI GKGCMC 3 cut(s) 493, 502, 672
BanI GGYRCC 2 cut(s) 437, 458
BbrPI CACGTG 1 cut(s) 380
Bbv12I GWGCWC 3 cut(s) 493, 502, 672
BbvI GCAGC 2 cut(s) 535, 692
BccI CCATC 2 cut(s) 93, 608
BciVI GTATCC 1 cut(s) 367
BcnI CCSGG 1 cut(s) 131
BfaI CTAG 5 cut(s) 15, 260, 423, 471, 545
BfoI RGCGCY 3 cut(s) 260, 271, 441
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 2 cut(s) 549, 681
BlnI CCTAGG 1 cut(s) 470
BlsI GCNGC 2 cut(s) 550, 682
Bme1390I CCNGG 1 cut(s) 131
Bme18I GGWCC 1 cut(s) 571
BmgT120I GGNCC 1 cut(s) 571
BmiI GGNNCC 3 cut(s) 439, 460, 572
BmrFI CCNGG 1 cut(s) 131
BmsI GCATC 3 cut(s) 226, 520, 667
BpuEI CTTGAG 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 131
BsaAI YACGTR 2 cut(s) 380, 398
BsaBI GATNNNNATC 1 cut(s) 630
BsaHI GRCGYC 2 cut(s) 190, 438
BsaJI CCNNGG 2 cut(s) 441, 470
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 451, 481
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 472
Bse21I CCTNAGG 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 283
Bse8I GATNNNNATC 1 cut(s) 630
BseDI CCNNGG 2 cut(s) 441, 470
BseGI GGATG 3 cut(s) 241, 478, 682
BseJI GATNNNNATC 1 cut(s) 630
BseLI CCNNNNNNNGG 2 cut(s) 64, 472
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 2 cut(s) 223, 566
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 3 cut(s) 493, 502, 672
BseXI GCAGC 2 cut(s) 535, 692
BshNI GGYRCC 2 cut(s) 437, 458
BsiHKAI GWGCWC 3 cut(s) 493, 502, 672
BsiSI CCGG 1 cut(s) 131
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 2 cut(s) 64, 472
BsmFI GGGAC 1 cut(s) 584
Bsp1286I GDGCHC 3 cut(s) 493, 502, 672
Bsp143I GATC 2 cut(s) 133, 228
Bsp19I CCATGG 1 cut(s) 441
BspACI CCGC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 222, 567
BspLI GGNNCC 3 cut(s) 439, 460, 572
BspPI GGATC 1 cut(s) 141
BspQI GCTCTTC 1 cut(s) 258
BspT107I GGYRCC 2 cut(s) 437, 458
BsrDI GCAATG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 441, 470
BssMI GATC 2 cut(s) 133, 228
BssNI GRCGYC 2 cut(s) 190, 438
BssT1I CCWWGG 2 cut(s) 441, 470
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 2 cut(s) 190, 438
BstAPI GCANNNNNTGC 1 cut(s) 497
BstBAI YACGTR 2 cut(s) 380, 398
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 2 cut(s) 209, 575
BstDSI CCRYGG 1 cut(s) 441
BstEII GGTNACC 1 cut(s) 67
BstF5I GGATG 3 cut(s) 241, 478, 682
BstH2I RGCGCY 3 cut(s) 260, 271, 441
BstHHI GCGC 4 cut(s) 259, 270, 330, 440
BstKTI GATC 2 cut(s) 136, 231
BstMBI GATC 2 cut(s) 133, 228
BstMWI GCNNNNNNNGC 2 cut(s) 265, 497
BstNSI RCATGY 1 cut(s) 167
BstPI GGTNACC 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 129
BstSLI GKGCMC 3 cut(s) 493, 502, 672
BstV1I GCAGC 2 cut(s) 535, 692
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 575
BsuI GTATCC 1 cut(s) 367
BtgI CCRYGG 1 cut(s) 441
BtsCI GGATG 3 cut(s) 241, 478, 682
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 4 cut(s) 259, 270, 330, 440
Cfr13I GGNCC 1 cut(s) 571
CseI GACGC 1 cut(s) 198
Csp6I GTAC 1 cut(s) 592
CviAII CATG 3 cut(s) 31, 164, 442
CviJI RGCY 5 cut(s) 48, 247, 426, 548, 656
CviKI_1 RGCY 5 cut(s) 48, 247, 426, 548, 656
CviQI GTAC 1 cut(s) 592
DdeI CTNAG 2 cut(s) 209, 575
DinI GGCGCC 1 cut(s) 439
DpnI GATC 2 cut(s) 135, 230
DpnII GATC 2 cut(s) 133, 228
DraIII CACNNNGTG 3 cut(s) 383, 488, 497
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 441, 470
Eco47I GGWCC 1 cut(s) 571
Eco47III AGCGCT 2 cut(s) 258, 269
Eco57I CTGAAG 2 cut(s) 369, 678
Eco72I CACGTG 1 cut(s) 380
Eco81I CCTNAGG 1 cut(s) 575
Eco91I GGTNACC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 571
EcoO65I GGTNACC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 441, 470
EgeI GGCGCC 1 cut(s) 439
EheI GGCGCC 1 cut(s) 439
ErhI CCWWGG 2 cut(s) 441, 470
FaeI CATG 3 cut(s) 34, 167, 445
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 584
FatI CATG 3 cut(s) 30, 163, 441
FauNDI CATATG 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 549, 681
FokI GGATG 3 cut(s) 248, 465, 689
Fsp4HI GCNGC 2 cut(s) 549, 681
FspBI CTAG 5 cut(s) 15, 260, 423, 471, 545
GlaI GCGC 4 cut(s) 258, 269, 329, 439
GluI GCNGC 2 cut(s) 549, 681
HaeII RGCGCY 3 cut(s) 260, 271, 441
HapII CCGG 1 cut(s) 131
HgaI GACGC 1 cut(s) 198
HhaI GCGC 4 cut(s) 259, 270, 330, 440
Hin1I GRCGYC 2 cut(s) 190, 438
Hin1II CATG 3 cut(s) 34, 167, 445
Hin6I GCGC 4 cut(s) 257, 268, 328, 438
HinP1I GCGC 4 cut(s) 257, 268, 328, 438
HinfI GANTC 3 cut(s) 18, 38, 287
HpaII CCGG 1 cut(s) 131
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 4 cut(s) 491, 500, 592, 670
Hpy188I TCNGA 3 cut(s) 52, 212, 349
Hpy188III TCNNGA 1 cut(s) 181
Hpy8I GTNNAC 4 cut(s) 491, 500, 592, 670
Hpy99I CGWCG 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 301, 344
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 4 cut(s) 379, 397, 487, 496
HpyCH4V TGCA 8 cut(s) 239, 491, 500, 533, 551, 599, 670, 680
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 497
HpyF3I CTNAG 2 cut(s) 209, 575
HpySE526I ACGT 4 cut(s) 379, 397, 487, 496
Hsp92I GRCGYC 2 cut(s) 190, 438
Hsp92II CATG 3 cut(s) 34, 167, 445
HspAI GCGC 4 cut(s) 257, 268, 328, 438
KasI GGCGCC 1 cut(s) 437
Kzo9I GATC 2 cut(s) 133, 228
LguI GCTCTTC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 580
LpnPI CCDG 5 cut(s) 30, 144, 312, 553, 587
Lsp1109I GCAGC 2 cut(s) 535, 692
LweI GCATC 3 cut(s) 226, 520, 667
MaeI CTAG 5 cut(s) 15, 260, 423, 471, 545
MaeII ACGT 4 cut(s) 379, 397, 487, 496
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 135, 230
MboI GATC 2 cut(s) 133, 228
MboII GAAGA 6 cut(s) 275, 614, 617, 620, 623, 671
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 3 cut(s) 493, 502, 672
MluCI AATT 1 cut(s) 506
Mly113I GGCGCC 1 cut(s) 438
MlyI GAGTC 2 cut(s) 12, 32
MnlI CCTC 6 cut(s) 302, 305, 477, 509, 513, 570
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 2 cut(s) 528, 675
MspI CCGG 1 cut(s) 131
MspR9I CCNGG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 265, 497
NarI GGCGCC 1 cut(s) 438
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 441
NdeI CATATG 1 cut(s) 195
NdeII GATC 2 cut(s) 133, 228
NlaIII CATG 3 cut(s) 34, 167, 445
NlaIV GGNNCC 3 cut(s) 439, 460, 572
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 493
PfeI GAWTC 1 cut(s) 287
PkrI GCNGC 2 cut(s) 550, 682
PleI GAGTC 2 cut(s) 12, 32
PluTI GGCGCC 1 cut(s) 441
PmaCI CACGTG 1 cut(s) 380
PmlI CACGTG 1 cut(s) 380
PpsI GAGTC 2 cut(s) 12, 32
Ppu21I YACGTR 2 cut(s) 380, 398
PpuMI RGGWCCY 1 cut(s) 571
Psp5II RGGWCCY 1 cut(s) 571
PspCI CACGTG 1 cut(s) 380
PspEI GGTNACC 1 cut(s) 67
PspN4I GGNNCC 3 cut(s) 439, 460, 572
PspPI GGNCC 1 cut(s) 571
PspPPI RGGWCCY 1 cut(s) 571
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 593
RsaNI GTAC 1 cut(s) 592
RseI CAYNNNNRTG 2 cut(s) 528, 675
SapI GCTCTTC 1 cut(s) 258
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 2 cut(s) 549, 681
Sau3AI GATC 2 cut(s) 133, 228
Sau96I GGNCC 1 cut(s) 571
SchI GAGTC 2 cut(s) 12, 32
ScrFI CCNGG 1 cut(s) 131
SduI GDGCHC 3 cut(s) 493, 502, 672
SfaNI GCATC 3 cut(s) 226, 520, 667
SfoI GGCGCC 1 cut(s) 439
SinI GGWCC 1 cut(s) 571
SmiMI CAYNNNNRTG 2 cut(s) 528, 675
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 506
SsiI CCGC 1 cut(s) 358
SspDI GGCGCC 1 cut(s) 437
SspI AATATT 1 cut(s) 105
SspMI CTAG 5 cut(s) 15, 260, 423, 471, 545
StyD4I CCNGG 1 cut(s) 129
StyI CCWWGG 2 cut(s) 441, 470
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 4 cut(s) 382, 400, 490, 499
TaqI TCGA 3 cut(s) 5, 21, 227
TasI AATT 1 cut(s) 506
TfiI GAWTC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TseI GCWGC 2 cut(s) 548, 680
TspDTI ATGAA 2 cut(s) 24, 678
VneI GTGCAC 3 cut(s) 489, 498, 668
VpaK11BI GGWCC 1 cut(s) 571
XceI RCATGY 1 cut(s) 167
XmaJI CCTAGG 1 cut(s) 470
XspI CTAG 5 cut(s) 15, 260, 423, 471, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.