Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000256.1

Orthogroup ID

OG0021290

Physical Location & Seq

Genomic Coordinates Reverse (-)

18102 .. 21251

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000256.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgtcgatcaagaatgcaagagagctatgggtagcgctagaagagcgctttgacaatgtccaagattctctccttcctgacttgaaggttcaatggaacaatttgcgctttgctgatttcaagtttgaaggaaaccgtaagtttggtgtggatacatgtggtgataatgccacacatgggagagggggtcatggtatccctagccgtaatggtggcgccatgggtcgtggtggtggcaccaaccctcctagggaacgcctgcaacgtgcacctcaattaaagggaggcaaccacaatgatgtgtgtcatcgatgtggatcaattgagcattggttcaaaacaaagaaaagtaagaaccaagaattggttcgaggagctgcacatgcgcctcatggcaccatgattgtgcaaagaccaaccacacatggtcggcgcttcctaccccctgcgagccgtaaagctcttggtctaccactggaagagccagggaggtatgtggaagacaactattttgggaaggatcaatatgacccagacaatgctctataccggtatgactactggggagaaccaaagaactcagagaagagcaagcaggaacggctaacagatgctcacaacaaagctattgttggaaagagtatggtttggtatgaaatgtcatatgacgattgcatcaaacagcagatggaaagagaagccaagggaataaaaccaagagaatatgaggaggaagatacaaacatagatgatgatgatgatgatgatgatgatgatgttgatgatgactttgatttcagcttcttgaatgaaaccgttgatatgaccacgcagccccatgttaatgggacaaaatctcctggaatttctgatgagggcatgtttgaggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005829 GO:0009295 GO:0009507 GO:0009508 GO:0009532 GO:0009536 GO:0009570 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.87

Weight (kDa)

5.16

Isoelectric Point (pI)

32.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021290)

Species	Orthologous Gene IDs
pyrus_communis	pycom72g00050
rosa_chinensis	RchiOBHm_Chr1g0380361
rosa_multiflora	Rmu_sc0000029.1_g000054 Rmu_sc0000256.1_g000009 Rmu_sc0004062.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	215, 236, 395
AccB7I	CCANNNNNTGG	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	469
AclWI	GGATC	2 cut(s)	325, 528
AcsI	RAATTY	1 cut(s)	864
AcyI	GRCGYC	1 cut(s)	216
AfeI	AGCGCT	2 cut(s)	36, 47
AfiI	CCNNNNNNNGG	3 cut(s)	177, 250, 364
AflIII	ACRYGT	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	549
AgsI	TTSAA	6 cut(s)	85, 92, 121, 128, 337, 808
AjnI	CCWGG	2 cut(s)	484, 859
AjuI	GAANNNNNNNTTGG	4 cut(s)	347, 351, 379, 383
AluBI	AGCT	5 cut(s)	25, 377, 461, 626, 801
AluI	AGCT	5 cut(s)	25, 377, 461, 626, 801
Alw21I	GWGCWC	1 cut(s)	271
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	325, 528
Aor51HI	AGCGCT	2 cut(s)	36, 47
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	2 cut(s)	377, 832
ApoI	RAATTY	1 cut(s)	864
ArsI	GACNNNNNNTTYG	2 cut(s)	494, 526
AsiGI	ACCGGT	1 cut(s)	549
Asp700I	GAANNNNTTC	1 cut(s)	366
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	6 cut(s)	37, 48, 108, 218, 388, 435
AsuHPI	GGTGA	1 cut(s)	173
AvrII	CCTAGG	1 cut(s)	248
BaeGI	GKGCMC	1 cut(s)	271
BanI	GGYRCC	3 cut(s)	215, 236, 395
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	2 cut(s)	364, 844
BccI	CCATC	1 cut(s)	682
BceAI	ACGGC	3 cut(s)	189, 438, 617
BciT130I	CCWGG	2 cut(s)	486, 861
BciVI	GTATCC	2 cut(s)	145, 206
BfaI	CTAG	3 cut(s)	38, 201, 249
BfoI	RGCGCY	4 cut(s)	38, 49, 219, 436
BfuI	GTATCC	2 cut(s)	145, 206
BisI	GCNGC	2 cut(s)	378, 833
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	2 cut(s)	379, 834
Bme1390I	CCNGG	2 cut(s)	486, 861
BmiI	GGNNCC	3 cut(s)	217, 238, 397
BmrFI	CCNGG	2 cut(s)	486, 861
BmrI	ACTGGG	1 cut(s)	571
BmsI	GCATC	2 cut(s)	601, 684
BmuI	ACTGGG	1 cut(s)	571
BpiI	GAAGAC	1 cut(s)	507
Bsa29I	ATCGAT	1 cut(s)	310
BsaBI	GATNNNNATC	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	219, 248, 485, 702
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	6 cut(s)	172, 202, 229, 259, 841, 871
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 250, 364
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	480, 566
Bse8I	GATNNNNATC	1 cut(s)	316
BseBI	CCWGG	2 cut(s)	486, 861
BseCI	ATCGAT	1 cut(s)	310
BseDI	CCNNGG	4 cut(s)	219, 248, 485, 702
BseJI	GATNNNNATC	1 cut(s)	316
BseLI	CCNNNNNNNGG	3 cut(s)	177, 250, 364
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	480, 566
BseRI	GAGGAG	2 cut(s)	387, 743
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	2 cut(s)	364, 844
BsgI	GTGCAG	1 cut(s)	363
BshNI	GGYRCC	3 cut(s)	215, 236, 395
BshTI	ACCGGT	1 cut(s)	549
BshVI	ATCGAT	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	1 cut(s)	862
BslI	CCNNNNNNNGG	3 cut(s)	177, 250, 364
BsmFI	GGGAC	1 cut(s)	862
BsmI	GAATGC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	6, 317, 520
Bsp19I	CCATGG	1 cut(s)	219
BspCNI	CTCAG	1 cut(s)	593
BspDI	ATCGAT	1 cut(s)	310
BspLI	GGNNCC	3 cut(s)	217, 238, 397
BspPI	GGATC	2 cut(s)	325, 528
BspQI	GCTCTTC	3 cut(s)	36, 474, 581
BspT107I	GGYRCC	3 cut(s)	215, 236, 395
BsrFI	RCCGGY	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	480, 566
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	4 cut(s)	219, 248, 485, 702
BssMI	GATC	3 cut(s)	6, 317, 520
BssNI	GRCGYC	1 cut(s)	216
BssT1I	CCWWGG	3 cut(s)	219, 248, 702
Bst2UI	CCWGG	2 cut(s)	486, 861
Bst4CI	ACNGT	2 cut(s)	137, 817
Bst6I	CTCTTC	3 cut(s)	36, 474, 581
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	260, 451, 593
BstDEI	CTNAG	1 cut(s)	580
BstDSI	CCRYGG	1 cut(s)	219
BstH2I	RGCGCY	4 cut(s)	38, 49, 219, 436
BstHHI	GCGC	6 cut(s)	37, 48, 108, 218, 388, 435
BstKTI	GATC	3 cut(s)	9, 320, 523
BstMBI	GATC	3 cut(s)	6, 317, 520
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 383, 601
BstNI	CCWGG	2 cut(s)	486, 861
BstNSI	RCATGY	3 cut(s)	159, 386, 883
BstSCI	CCNGG	2 cut(s)	484, 859
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	364, 844
BstV2I	GAAGAC	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	845
Bsu15I	ATCGAT	1 cut(s)	310
BsuI	GTATCC	2 cut(s)	145, 206
BsuTUI	ATCGAT	1 cut(s)	310
BtgI	CCRYGG	1 cut(s)	219
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	3 cut(s)	260, 451, 593
CfoI	GCGC	6 cut(s)	37, 48, 108, 218, 388, 435
Cfr10I	RCCGGY	1 cut(s)	549
ClaI	ATCGAT	1 cut(s)	310
CspAI	ACCGGT	1 cut(s)	549
DdeI	CTNAG	1 cut(s)	580
DinI	GGCGCC	1 cut(s)	217
DpnI	GATC	3 cut(s)	8, 319, 522
DpnII	GATC	3 cut(s)	6, 317, 520
Eam1104I	CTCTTC	3 cut(s)	36, 474, 581
EarI	CTCTTC	3 cut(s)	36, 474, 581
Eco130I	CCWWGG	3 cut(s)	219, 248, 702
Eco47III	AGCGCT	2 cut(s)	36, 47
EcoRII	CCWGG	2 cut(s)	484, 859
EcoT14I	CCWWGG	3 cut(s)	219, 248, 702
EgeI	GGCGCC	1 cut(s)	217
EheI	GGCGCC	1 cut(s)	217
ErhI	CCWWGG	3 cut(s)	219, 248, 702
FaqI	GGGAC	1 cut(s)	862
FauNDI	CATATG	1 cut(s)	664
FblI	GTMKAC	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	378, 833
Fsp4HI	GCNGC	2 cut(s)	378, 833
FspBI	CTAG	3 cut(s)	38, 201, 249
GlaI	GCGC	6 cut(s)	36, 47, 107, 217, 387, 434
GluI	GCNGC	2 cut(s)	378, 833
HaeII	RGCGCY	4 cut(s)	38, 49, 219, 436
HapII	CCGG	1 cut(s)	550
HhaI	GCGC	6 cut(s)	37, 48, 108, 218, 388, 435
Hin1I	GRCGYC	1 cut(s)	216
Hin6I	GCGC	6 cut(s)	35, 46, 106, 216, 386, 433
HinP1I	GCGC	6 cut(s)	35, 46, 106, 216, 386, 433
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	269, 470
Hpy188I	TCNGA	2 cut(s)	583, 871
Hpy188III	TCNNGA	3 cut(s)	10, 77, 805
Hpy8I	GTNNAC	2 cut(s)	269, 470
HpyAV	CCTTC	4 cut(s)	79, 83, 122, 511
HpyCH4III	ACNGT	2 cut(s)	137, 817
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	6 cut(s)	17, 262, 269, 380, 409, 675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 383, 601
HpyF3I	CTNAG	1 cut(s)	580
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	216
HspAI	GCGC	6 cut(s)	35, 46, 106, 216, 386, 433
KasI	GGCGCC	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	6, 317, 520
LguI	GCTCTTC	3 cut(s)	36, 474, 581
LmnI	GCTCC	1 cut(s)	374
Lsp1109I	GCAGC	2 cut(s)	364, 844
LweI	GCATC	2 cut(s)	601, 684
MaeI	CTAG	3 cut(s)	38, 201, 249
MaeII	ACGT	1 cut(s)	265
MalI	GATC	3 cut(s)	8, 319, 522
MboI	GATC	3 cut(s)	6, 317, 520
MboII	GAAGA	5 cut(s)	53, 491, 512, 598, 746
MfeI	CAATTG	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	5 cut(s)	100, 275, 321, 362, 864
Mly113I	GGCGCC	1 cut(s)	216
MmeI	TCCRAC	1 cut(s)	613
MroXI	GAANNNNTTC	1 cut(s)	366
MseI	TTAA	3 cut(s)	278, 843, 892
MslI	CAYNNNNRTG	4 cut(s)	297, 312, 404, 843
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	486, 861
MunI	CAATTG	1 cut(s)	321
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	2 cut(s)	486, 861
MwoI	GCNNNNNNNGC	3 cut(s)	43, 383, 601
NarI	GGCGCC	1 cut(s)	216
NcoI	CCATGG	1 cut(s)	219
NdeI	CATATG	1 cut(s)	664
NdeII	GATC	3 cut(s)	6, 317, 520
NlaIV	GGNNCC	3 cut(s)	217, 238, 397
NspI	RCATGY	3 cut(s)	159, 386, 883
PciI	ACATGT	1 cut(s)	155
PciSI	GCTCTTC	3 cut(s)	36, 474, 581
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	19
PdmI	GAANNNNTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	65
PflFI	GACNNNGTC	1 cut(s)	56
PflMI	CCANNNNNTGG	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	859
PinAI	ACCGGT	1 cut(s)	549
PkrI	GCNGC	2 cut(s)	379, 834
PluTI	GGCGCC	1 cut(s)	219
PscI	ACATGT	1 cut(s)	155
Psp6I	CCWGG	2 cut(s)	484, 859
PspGI	CCWGG	2 cut(s)	484, 859
PspN4I	GGNNCC	3 cut(s)	217, 238, 397
PsyI	GACNNNGTC	1 cut(s)	56
RseI	CAYNNNNRTG	4 cut(s)	297, 312, 404, 843
SapI	GCTCTTC	3 cut(s)	36, 474, 581
SaqAI	TTAA	3 cut(s)	278, 843, 892
SatI	GCNGC	2 cut(s)	378, 833
Sau3AI	GATC	3 cut(s)	6, 317, 520
ScrFI	CCNGG	2 cut(s)	486, 861
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	9 cut(s)	27, 90, 268, 274, 379, 463, 494, 628, 803
SfaNI	GCATC	2 cut(s)	601, 684
SfoI	GGCGCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	4 cut(s)	297, 312, 404, 843
Sse9I	AATT	5 cut(s)	100, 275, 321, 362, 864
SspDI	GGCGCC	1 cut(s)	215
SspMI	CTAG	3 cut(s)	38, 201, 249
StyD4I	CCNGG	2 cut(s)	484, 859
StyI	CCWWGG	3 cut(s)	219, 248, 702
TaaI	ACNGT	2 cut(s)	137, 817
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	5, 310, 370
TasI	AATT	5 cut(s)	100, 275, 321, 362, 864
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	3 cut(s)	278, 843, 892
Tru9I	TTAA	3 cut(s)	278, 843, 892
TscAI	CASTG	1 cut(s)	480
TseI	GCWGC	2 cut(s)	377, 832
TspDTI	ATGAA	2 cut(s)	669, 825
TspRI	CASTG	1 cut(s)	480
Tth111I	GACNNNGTC	1 cut(s)	56
Van91I	CCANNNNNTGG	1 cut(s)	364
VneI	GTGCAC	1 cut(s)	267
XapI	RAATTY	1 cut(s)	864
XceI	RCATGY	3 cut(s)	159, 386, 883
XmaJI	CCTAGG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	366
XspI	CTAG	3 cut(s)	38, 201, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.