Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0020060

Physical Location & Seq

Genomic Coordinates Reverse (-)

55663 .. 57519

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000031.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgggtgggtcagctgctgctggtgctaggcttgctcaggaaactggtgctgcagctagtgaaaaaaatccttcctccgttaagcttaaggaggagatcacgacttttaccattgaccacatcggatgtgtcaccgccggtattcaatattggtcaagtctcctgcctaattccatggagatgcctatccacggatccgcttcacttccaaataatttcatcaagagagaaagatcattccttcagtctcccacttatggaaacctcgtcactgttcttagcattgatggaggtggaatcagaggaattatccctggtactcttctcagtttccttgagtctgagcttcaggtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Patatin

Protein Analysis

118

Amino Acids

12.42

Weight (kDa)

5.59

Isoelectric Point (pI)

44.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020060)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000031.1_g000010
rosa_roxburghii	Rroxscaffold_4G00305340
rosa_samantha	Rh1AG223200 Rh1BG189300 Rh1CG208000 Rh1DG218200
rosa_wichuraiana	Rw1G019030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	135, 198
AclWI	GGATC	2 cut(s)	189, 202
AcuI	CTGAAG	2 cut(s)	227, 332
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	191, 257
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	14, 56, 85, 346
AluI	AGCT	4 cut(s)	14, 56, 85, 346
Alw26I	GTCTC	2 cut(s)	164, 252
AlwI	GGATC	2 cut(s)	189, 202
AlwNI	CAGNNNCTG	1 cut(s)	17
ApeKI	GCWGC	4 cut(s)	14, 17, 50, 53
AsuHPI	GGTGA	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	194
BbvI	GCAGC	3 cut(s)	4, 37, 65
BccI	CCATC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	164, 252
BfaI	CTAG	2 cut(s)	27, 57
BfmI	CTRYAG	1 cut(s)	51
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	4 cut(s)	15, 18, 51, 54
BlsI	GCNGC	4 cut(s)	16, 19, 52, 55
Bme1390I	CCNGG	1 cut(s)	315
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	174, 190, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 257
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	3 cut(s)	174, 190, 313
BseGI	GGATG	1 cut(s)	131
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	191, 257
BseMII	CTCAG	3 cut(s)	50, 333, 340
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	4, 37, 65
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	191, 257
BsmAI	GTCTC	2 cut(s)	164, 252
Bsp143I	GATC	3 cut(s)	96, 194, 233
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	135, 198
BspCNI	CTCAG	3 cut(s)	49, 334, 339
BspLI	GGNNCC	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	2 cut(s)	189, 202
BspTI	CTTAAG	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	3 cut(s)	174, 190, 313
BssMI	GATC	3 cut(s)	96, 194, 233
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	274
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	4 cut(s)	36, 278, 326, 342
BstDSI	CCRYGG	2 cut(s)	174, 190
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	3 cut(s)	99, 197, 236
BstMAI	GTCTC	2 cut(s)	164, 252
BstMBI	GATC	3 cut(s)	96, 194, 233
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 32
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	3 cut(s)	4, 37, 65
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BtgI	CCRYGG	2 cut(s)	174, 190
BtsCI	GGATG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr10I	RCCGGY	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	5 cut(s)	14, 31, 56, 85, 346
CviKI_1	RGCY	5 cut(s)	14, 31, 56, 85, 346
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	4 cut(s)	36, 278, 326, 342
DpnI	GATC	3 cut(s)	98, 196, 235
DpnII	GATC	3 cut(s)	96, 194, 233
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Eco130I	CCWWGG	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	227, 332
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	178
FaiI	YATR	3 cut(s)	176, 258, 355
FatI	CATG	1 cut(s)	174
Fnu4HI	GCNGC	4 cut(s)	15, 18, 51, 54
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	4 cut(s)	15, 18, 51, 54
FspBI	CTAG	2 cut(s)	27, 57
GluI	GCNGC	4 cut(s)	15, 18, 51, 54
HapII	CCGG	1 cut(s)	138
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	2 cut(s)	297, 338
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	125, 302, 343
Hpy188III	TCNNGA	3 cut(s)	38, 100, 223
HpyAV	CCTTC	2 cut(s)	81, 251
HpyCH4III	ACNGT	1 cut(s)	274
HpyCH4V	TGCA	1 cut(s)	53
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 32
HpyF3I	CTNAG	4 cut(s)	36, 278, 326, 342
Hsp92II	CATG	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	96, 194, 233
LpnPI	CCDG	8 cut(s)	6, 23, 30, 151, 176, 300, 327, 335
Lsp1109I	GCAGC	3 cut(s)	4, 37, 65
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	27, 57
MaeIII	GTNAC	2 cut(s)	130, 268
MalI	GATC	3 cut(s)	98, 196, 235
MboI	GATC	3 cut(s)	96, 194, 233
MboII	GAAGA	1 cut(s)	314
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	3 cut(s)	169, 214, 306
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	85, 85, 275, 284, 296
MseI	TTAA	2 cut(s)	81, 87
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	14
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	23, 32
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	3 cut(s)	96, 194, 233
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	2 cut(s)	130, 268
PfeI	GAWTC	1 cut(s)	297
PkrI	GCNGC	4 cut(s)	16, 19, 52, 55
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	81, 87
SatI	GCNGC	4 cut(s)	15, 18, 51, 54
Sau3AI	GATC	3 cut(s)	96, 194, 233
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	315
SetI	ASST	7 cut(s)	16, 58, 87, 267, 295, 348, 354
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	2 cut(s)	86, 335
SmoI	CTYRAG	2 cut(s)	86, 335
Sse9I	AATT	3 cut(s)	169, 214, 306
SsiI	CCGC	2 cut(s)	135, 198
SspI	AATATT	1 cut(s)	149
SspMI	CTAG	2 cut(s)	27, 57
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	1 cut(s)	274
TasI	AATT	3 cut(s)	169, 214, 306
TfiI	GAWTC	1 cut(s)	297
Tru1I	TTAA	2 cut(s)	81, 87
Tru9I	TTAA	2 cut(s)	81, 87
TscAI	CASTG	1 cut(s)	277
TseFI	GTSAC	2 cut(s)	130, 268
TseI	GCWGC	4 cut(s)	14, 17, 50, 53
Tsp45I	GTSAC	2 cut(s)	130, 268
TspDTI	ATGAA	1 cut(s)	208
TspGWI	ACGGA	2 cut(s)	67, 207
TspRI	CASTG	1 cut(s)	277
Vha464I	CTTAAG	1 cut(s)	86
XspI	CTAG	2 cut(s)	27, 57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.