No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_multiflora | Rmu_sc0000031.1_g000010 |
| rosa_roxburghii | Rroxscaffold_4G00305340 |
| rosa_samantha | Rh1AG223200 Rh1BG189300 Rh1CG208000 Rh1DG218200 |
| rosa_wichuraiana | Rw1G019030 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 135 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 179 |
| AflII | CTTAAG | 1 cut(s) | 86 |
| AluBI | AGCT | 3 cut(s) | 14, 56, 85 |
| AluI | AGCT | 3 cut(s) | 14, 56, 85 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 17, 194 |
| ApeKI | GCWGC | 7 cut(s) | 14, 17, 50, 53, 158, 194, 227 |
| AsuHPI | GGTGA | 3 cut(s) | 124, 194, 292 |
| AsuNHI | GCTAGC | 1 cut(s) | 230 |
| AxyI | CCTNAGG | 1 cut(s) | 253 |
| BbvI | GCAGC | 6 cut(s) | 4, 37, 65, 170, 181, 214 |
| BccI | CCATC | 1 cut(s) | 302 |
| BfaI | CTAG | 6 cut(s) | 27, 57, 198, 204, 231, 343 |
| BfmI | CTRYAG | 1 cut(s) | 51 |
| BfrI | CTTAAG | 1 cut(s) | 86 |
| BisI | GCNGC | 7 cut(s) | 15, 18, 51, 54, 159, 195, 228 |
| BlsI | GCNGC | 7 cut(s) | 16, 19, 52, 55, 160, 196, 229 |
| BmtI | GCTAGC | 1 cut(s) | 234 |
| Bpu10I | CCTNAGC | 1 cut(s) | 36 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 179 |
| Bse1I | ACTGG | 2 cut(s) | 49, 226 |
| Bse21I | CCTNAGG | 1 cut(s) | 253 |
| BseGI | GGATG | 1 cut(s) | 131 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 179 |
| BseMII | CTCAG | 2 cut(s) | 50, 267 |
| BseNI | ACTGG | 2 cut(s) | 49, 226 |
| BseRI | GAGGAG | 1 cut(s) | 241 |
| BseXI | GCAGC | 6 cut(s) | 4, 37, 65, 170, 181, 214 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 179 |
| Bsp143I | GATC | 1 cut(s) | 96 |
| BspACI | CCGC | 1 cut(s) | 135 |
| BspCNI | CTCAG | 2 cut(s) | 49, 266 |
| BspMAI | CTGCAG | 1 cut(s) | 55 |
| BspOI | GCTAGC | 1 cut(s) | 234 |
| BspTI | CTTAAG | 1 cut(s) | 86 |
| BsrI | ACTGG | 2 cut(s) | 49, 226 |
| BssMI | GATC | 1 cut(s) | 96 |
| BstAFI | CTTAAG | 1 cut(s) | 86 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 164 |
| BstC8I | GCNNGC | 2 cut(s) | 33, 232 |
| BstDEI | CTNAG | 2 cut(s) | 36, 253 |
| BstF5I | GGATG | 1 cut(s) | 131 |
| BstKTI | GATC | 1 cut(s) | 99 |
| BstMBI | GATC | 1 cut(s) | 96 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 23, 32, 164, 200, 209 |
| BstSFI | CTRYAG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 6 cut(s) | 4, 37, 65, 170, 181, 214 |
| Bsu36I | CCTNAGG | 1 cut(s) | 253 |
| BtsCI | GGATG | 1 cut(s) | 131 |
| Cac8I | GCNNGC | 2 cut(s) | 33, 232 |
| CaiI | CAGNNNCTG | 2 cut(s) | 17, 194 |
| CviJI | RGCY | 7 cut(s) | 14, 31, 56, 85, 143, 161, 282 |
| CviKI_1 | RGCY | 7 cut(s) | 14, 31, 56, 85, 143, 161, 282 |
| DdeI | CTNAG | 2 cut(s) | 36, 253 |
| DpnI | GATC | 1 cut(s) | 98 |
| DpnII | GATC | 1 cut(s) | 96 |
| Eco81I | CCTNAGG | 1 cut(s) | 253 |
| FaiI | YATR | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 7 cut(s) | 15, 18, 51, 54, 159, 195, 228 |
| FokI | GGATG | 1 cut(s) | 138 |
| Fsp4HI | GCNGC | 7 cut(s) | 15, 18, 51, 54, 159, 195, 228 |
| FspBI | CTAG | 6 cut(s) | 27, 57, 198, 204, 231, 343 |
| GluI | GCNGC | 7 cut(s) | 15, 18, 51, 54, 159, 195, 228 |
| HindIII | AAGCTT | 1 cut(s) | 83 |
| HinfI | GANTC | 2 cut(s) | 185, 297 |
| HphI | GGTGA | 3 cut(s) | 124, 194, 292 |
| Hpy188I | TCNGA | 1 cut(s) | 125 |
| Hpy188III | TCNNGA | 2 cut(s) | 38, 100 |
| HpyAV | CCTTC | 2 cut(s) | 81, 160 |
| HpyCH4V | TGCA | 1 cut(s) | 53 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 23, 32, 164, 200, 209 |
| HpyF3I | CTNAG | 2 cut(s) | 36, 253 |
| Kzo9I | GATC | 1 cut(s) | 96 |
| LpnPI | CCDG | 9 cut(s) | 6, 23, 30, 157, 189, 200, 207, 240, 297 |
| Lsp1109I | GCAGC | 6 cut(s) | 4, 37, 65, 170, 181, 214 |
| MaeI | CTAG | 6 cut(s) | 27, 57, 198, 204, 231, 343 |
| MaeIII | GTNAC | 2 cut(s) | 130, 298 |
| MalI | GATC | 1 cut(s) | 98 |
| MboI | GATC | 1 cut(s) | 96 |
| MlyI | GAGTC | 2 cut(s) | 194, 306 |
| MnlI | CCTC | 4 cut(s) | 85, 256, 262, 299 |
| MseI | TTAA | 2 cut(s) | 81, 87 |
| MspA1I | CMGCKG | 1 cut(s) | 14 |
| MspCI | CTTAAG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 23, 32, 164, 200, 209 |
| NdeII | GATC | 1 cut(s) | 96 |
| NheI | GCTAGC | 1 cut(s) | 230 |
| NmuCI | GTSAC | 2 cut(s) | 130, 298 |
| PkrI | GCNGC | 7 cut(s) | 16, 19, 52, 55, 160, 196, 229 |
| PleI | GAGTC | 2 cut(s) | 193, 305 |
| PpsI | GAGTC | 2 cut(s) | 193, 305 |
| PstI | CTGCAG | 1 cut(s) | 55 |
| PstNI | CAGNNNCTG | 2 cut(s) | 17, 194 |
| PvuII | CAGCTG | 1 cut(s) | 14 |
| SaqAI | TTAA | 2 cut(s) | 81, 87 |
| SatI | GCNGC | 7 cut(s) | 15, 18, 51, 54, 159, 195, 228 |
| Sau3AI | GATC | 1 cut(s) | 96 |
| SchI | GAGTC | 2 cut(s) | 194, 306 |
| SetI | ASST | 7 cut(s) | 16, 58, 87, 152, 178, 291, 338 |
| SfcI | CTRYAG | 1 cut(s) | 51 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| SsiI | CCGC | 1 cut(s) | 135 |
| SspMI | CTAG | 6 cut(s) | 27, 57, 198, 204, 231, 343 |
| TaqI | TCGA | 3 cut(s) | 291, 320, 327 |
| Tru1I | TTAA | 2 cut(s) | 81, 87 |
| Tru9I | TTAA | 2 cut(s) | 81, 87 |
| TseFI | GTSAC | 2 cut(s) | 130, 298 |
| TseI | GCWGC | 7 cut(s) | 14, 17, 50, 53, 158, 194, 227 |
| Tsp45I | GTSAC | 2 cut(s) | 130, 298 |
| TspGWI | ACGGA | 1 cut(s) | 67 |
| Vha464I | CTTAAG | 1 cut(s) | 86 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 151 |
| XspI | CTAG | 6 cut(s) | 27, 57, 198, 204, 231, 343 |