Rroxscaffold_4G00305340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0020060
Physical Location & Seq
Forward (+)
25967285 .. 25967856
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305340.1

Sequence Viewer

Length: 411 bp
ATGCCGAGGCAAAGCCCTTGTAATGTCACAGTGTGCTTCATCACAATGAATCTGCAGTTCATCAACAGATCATCATCATTTTGCTCGAAGCATTCCAACCATCATGACATTGTGATGTTCGTTGTTTCGATCCTCCTGACCTTGGTCCAGATCAGATTTCCATCTGAAAATTTGTTCCACACACACCACAAGACCATGGTGGTTGTGATGTCTAGCTTGCTAATTTATTGCCTTGCGTTCGGGATTATAAGCCCCTGTGCTCTACCTTCTCTGGGTGGGTCAGCTGCTGCTGGTGCTAGGCTTGCTCAGGAAACTGGTGCTGCACTTAAGGAGGAGATCACGACTTTTACCATTGACCACATCGGATGTGTCAGTGCGGGTATTCAATATAGGGTACCGCTATTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.81

Weight (kDa)

8.29

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020060)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0000031.1_g000010
rosa_roxburghii Rroxscaffold_4G00305340
rosa_samantha Rh1AG223200 Rh1BG189300 Rh1CG208000 Rh1DG218200
rosa_wichuraiana Rw1G019030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
Acc65I GGTACC 1 cut(s) 394
AccB1I GGYRCC 1 cut(s) 394
AciI CCGC 2 cut(s) 377, 398
AclWI GGATC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 169
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 1 cut(s) 396
AfiI CCNNNNNNNGG 2 cut(s) 142, 272
AflII CTTAAG 1 cut(s) 326
AgsI TTSAA 1 cut(s) 386
AluBI AGCT 2 cut(s) 216, 284
AluI AGCT 2 cut(s) 216, 284
Alw21I GWGCWC 1 cut(s) 262
AlwI GGATC 1 cut(s) 124
AlwNI CAGNNNCTG 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 284, 287, 320
ApoI RAATTY 1 cut(s) 169
Asp718I GGTACC 1 cut(s) 394
AspS9I GGNCC 1 cut(s) 145
AvaII GGWCC 1 cut(s) 145
BanI GGYRCC 1 cut(s) 394
Bbv12I GWGCWC 1 cut(s) 262
BbvI GCAGC 3 cut(s) 271, 274, 307
BccI CCATC 2 cut(s) 108, 169
BfaI CTAG 2 cut(s) 213, 297
BfmI CTRYAG 1 cut(s) 53
BfrI CTTAAG 1 cut(s) 326
BisI GCNGC 3 cut(s) 285, 288, 321
BlsI GCNGC 3 cut(s) 286, 289, 322
Bme18I GGWCC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 396
BoxI GACNNNNGTC 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 306
BsaBI GATNNNNATC 2 cut(s) 73, 160
BsaJI CCNNGG 3 cut(s) 5, 141, 195
Bsc4I CCNNNNNNNGG 2 cut(s) 142, 272
Bse1I ACTGG 1 cut(s) 319
Bse8I GATNNNNATC 2 cut(s) 73, 160
BseDI CCNNGG 3 cut(s) 5, 141, 195
BseGI GGATG 1 cut(s) 371
BseJI GATNNNNATC 2 cut(s) 73, 160
BseLI CCNNNNNNNGG 2 cut(s) 142, 272
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 347
BseXI GCAGC 3 cut(s) 271, 274, 307
BsgI GTGCAG 1 cut(s) 306
BshNI GGYRCC 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 262
BslI CCNNNNNNNGG 2 cut(s) 142, 272
BsmI GAATGC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 4 cut(s) 68, 129, 150, 336
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 2 cut(s) 377, 398
BspCNI CTCAG 1 cut(s) 319
BspHI TCATGA 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 57
BspPI GGATC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 394
BspTI CTTAAG 1 cut(s) 326
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 5, 141, 195
BssMI GATC 4 cut(s) 68, 129, 150, 336
BssT1I CCWWGG 2 cut(s) 141, 195
Bst4CI ACNGT 1 cut(s) 31
BstAFI CTTAAG 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 218, 303
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 4 cut(s) 71, 132, 153, 339
BstMBI GATC 4 cut(s) 68, 129, 150, 336
BstMWI GCNNNNNNNGC 2 cut(s) 293, 302
BstPAI GACNNNNGTC 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 271, 274, 307
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 36, 379
Cac8I GCNNGC 2 cut(s) 218, 303
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 103
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 395
CviAII CATG 2 cut(s) 104, 196
CviJI RGCY 5 cut(s) 15, 216, 252, 284, 301
CviKI_1 RGCY 5 cut(s) 15, 216, 252, 284, 301
CviQI GTAC 1 cut(s) 395
DdeI CTNAG 1 cut(s) 306
DpnI GATC 4 cut(s) 70, 131, 152, 338
DpnII GATC 4 cut(s) 68, 129, 150, 336
DraIII CACNNNGTG 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 141, 195
Eco47I GGWCC 1 cut(s) 145
EcoT14I CCWWGG 2 cut(s) 141, 195
ErhI CCWWGG 2 cut(s) 141, 195
FaeI CATG 2 cut(s) 107, 199
FaiI YATR 5 cut(s) 105, 197, 248, 390, 409
FatI CATG 2 cut(s) 103, 195
FauI CCCGC 1 cut(s) 370
Fnu4HI GCNGC 3 cut(s) 285, 288, 321
FokI GGATG 1 cut(s) 378
Fsp4HI GCNGC 3 cut(s) 285, 288, 321
FspBI CTAG 2 cut(s) 213, 297
GluI GCNGC 3 cut(s) 285, 288, 321
Hin1II CATG 2 cut(s) 107, 199
HinfI GANTC 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 155, 166, 365
Hpy188III TCNNGA 6 cut(s) 104, 136, 148, 241, 308, 340
HpyAV CCTTC 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 55, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 293, 302
HpyF3I CTNAG 1 cut(s) 306
Hsp92II CATG 2 cut(s) 107, 199
KpnI GGTACC 1 cut(s) 398
Kzo9I GATC 4 cut(s) 68, 129, 150, 336
LpnPI CCDG 7 cut(s) 149, 161, 257, 268, 276, 293, 300
Lsp1109I GCAGC 3 cut(s) 271, 274, 307
MaeI CTAG 2 cut(s) 213, 297
MaeIII GTNAC 1 cut(s) 25
MalI GATC 4 cut(s) 70, 131, 152, 338
MboI GATC 4 cut(s) 68, 129, 150, 336
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 169, 222
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 2 cut(s) 143, 325
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 2 cut(s) 44, 113
MspA1I CMGCKG 1 cut(s) 284
MspCI CTTAAG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 293, 302
NcoI CCATGG 1 cut(s) 195
NdeII GATC 4 cut(s) 68, 129, 150, 336
NlaIII CATG 2 cut(s) 107, 199
NlaIV GGNNCC 1 cut(s) 396
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 25
PagI TCATGA 1 cut(s) 103
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 286, 289, 322
PshAI GACNNNNGTC 1 cut(s) 143
PsiI TTATAA 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 145
PstI CTGCAG 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 396
RsaNI GTAC 1 cut(s) 395
RseI CAYNNNNRTG 2 cut(s) 44, 113
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 3 cut(s) 285, 288, 321
Sau3AI GATC 4 cut(s) 68, 129, 150, 336
Sau96I GGNCC 1 cut(s) 145
SduI GDGCHC 1 cut(s) 262
SetI ASST 4 cut(s) 143, 218, 268, 286
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 1 cut(s) 145
SmiMI CAYNNNNRTG 2 cut(s) 44, 113
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
Sse9I AATT 2 cut(s) 169, 222
SsiI CCGC 2 cut(s) 377, 398
SspMI CTAG 2 cut(s) 213, 297
StyI CCWWGG 2 cut(s) 141, 195
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 86, 128
TasI AATT 2 cut(s) 169, 222
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 2 cut(s) 36, 379
TseFI GTSAC 1 cut(s) 25
TseI GCWGC 3 cut(s) 284, 287, 320
Tsp45I GTSAC 1 cut(s) 25
TspDTI ATGAA 3 cut(s) 28, 49, 62
TspRI CASTG 2 cut(s) 36, 379
Vha464I CTTAAG 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 145
XapI RAATTY 1 cut(s) 169
XspI CTAG 2 cut(s) 213, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.