Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000031.1

Orthogroup ID

OG0020683

Physical Location & Seq

Genomic Coordinates Forward (+)

187550 .. 188005

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgaatcacaggagggacgaagagatcccatcctccctagcctcctcctactccaccaaagcctttaagcaacccaaatctctccccagatccatcaactacatcttcaaagagcaacatctcctcttcatcctcgttggcattctcgtcggctccacctccttcatcctccagcccactatctcctgcctctcccttccaagcccaaaccctgcatccctagatctttttcctccgttcataaccgaatcaacactgcctccttctctatcgacctcccctacaacgccggcaaggtcccctccaacctcggcaaacgcaggctcaggatcgtcatcaccggtggcaccggcttcattgggtctcacctcgtcgataagttactctctaaagaacgatgtgattgtcatcgacaatttgttcaccgagaggaagcagaatgtggtgcaccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

151

Amino Acids

16.21

Weight (kDa)

8.85

Isoelectric Point (pI)

75.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020683)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000024107 RLG00000030807
rosa_multiflora	Rmu_sc0000031.1_g000037
rosa_roxburghii	Rroxscaffold_2G00088930
rosa_rugosa	Rorug05G0276100
rosa_samantha	Rh5CG384200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AclWI	GGATC	3 cut(s)	19, 84, 337
AgeI	ACCGGT	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	1 cut(s)	368
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	3 cut(s)	19, 84, 337
ApaLI	GTGCAC	1 cut(s)	446
AsiGI	ACCGGT	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	297
AsuHPI	GGTGA	3 cut(s)	330, 358, 415
AvaII	GGWCC	1 cut(s)	297
BaeGI	GKGCMC	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	450
BccI	CCATC	2 cut(s)	37, 101
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	38, 221
BglII	AGATCT	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	297
BmiI	GGNNCC	3 cut(s)	154, 299, 348
BmsI	GCATC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	155
Bpu10I	CCTNAGC	1 cut(s)	325
BsaBI	GATNNNNATC	2 cut(s)	334, 407
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	340
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bse118I	RCCGGY	3 cut(s)	289, 340, 349
Bse8I	GATNNNNATC	2 cut(s)	334, 407
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	4 cut(s)	29, 129, 165, 215
BseJI	GATNNNNATC	2 cut(s)	334, 407
BseMII	CTCAG	1 cut(s)	339
BseRI	GAGGAG	2 cut(s)	34, 113
BseSI	GKGCMC	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	346
BshTI	ACCGGT	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	3 cut(s)	290, 341, 350
BslFI	GGGAC	2 cut(s)	29, 283
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	29, 283
BsmI	GAATGC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp143I	GATC	4 cut(s)	24, 89, 223, 329
BspCNI	CTCAG	1 cut(s)	338
BspLI	GGNNCC	3 cut(s)	154, 299, 348
BspPI	GGATC	3 cut(s)	19, 84, 337
BspT107I	GGYRCC	1 cut(s)	346
BspTNI	GGTCTC	1 cut(s)	368
BsrFI	RCCGGY	3 cut(s)	289, 340, 349
BssAI	RCCGGY	3 cut(s)	289, 340, 349
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	24, 89, 223, 329
Bst6I	CTCTTC	2 cut(s)	15, 131
BstC8I	GCNNGC	2 cut(s)	291, 322
BstDEI	CTNAG	1 cut(s)	325
BstF5I	GGATG	4 cut(s)	29, 129, 165, 215
BstKTI	GATC	4 cut(s)	27, 92, 226, 332
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	4 cut(s)	24, 89, 223, 329
BstSLI	GKGCMC	1 cut(s)	450
BstX2I	RGATCY	3 cut(s)	24, 89, 223
BstYI	RGATCY	3 cut(s)	24, 89, 223
BtsCI	GGATG	4 cut(s)	29, 129, 165, 215
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	2 cut(s)	291, 322
Cfr10I	RCCGGY	3 cut(s)	289, 340, 349
Cfr13I	GGNCC	1 cut(s)	297
CspAI	ACCGGT	1 cut(s)	340
CviJI	RGCY	7 cut(s)	41, 62, 153, 175, 204, 324, 353
CviKI_1	RGCY	7 cut(s)	41, 62, 153, 175, 204, 324, 353
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	4 cut(s)	26, 91, 225, 331
DpnII	GATC	4 cut(s)	24, 89, 223, 329
Eam1104I	CTCTTC	2 cut(s)	15, 131
EarI	CTCTTC	2 cut(s)	15, 131
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	1 cut(s)	297
EcoO109I	RGGNCCY	1 cut(s)	297
FaiI	YATR	1 cut(s)	242
FaqI	GGGAC	2 cut(s)	29, 283
FokI	GGATG	4 cut(s)	16, 116, 152, 202
FspBI	CTAG	2 cut(s)	38, 221
GsuI	CTGGAG	1 cut(s)	155
HapII	CCGG	3 cut(s)	290, 341, 350
HinfI	GANTC	2 cut(s)	4, 248
HpaII	CCGG	3 cut(s)	290, 341, 350
HphI	GGTGA	3 cut(s)	330, 358, 415
Hpy166II	GTNNAC	2 cut(s)	423, 448
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	2 cut(s)	423, 448
Hpy99I	CGWCG	2 cut(s)	152, 376
HpyAV	CCTTC	3 cut(s)	172, 206, 273
HpyCH4V	TGCA	2 cut(s)	215, 448
HpyF3I	CTNAG	1 cut(s)	325
KroI	GCCGGC	1 cut(s)	289
KroNI	GCCGGC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	24, 89, 223, 329
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	9 cut(s)	100, 185, 199, 225, 303, 306, 312, 354, 363
LweI	GCATC	1 cut(s)	224
MaeI	CTAG	2 cut(s)	38, 221
MaeIII	GTNAC	1 cut(s)	380
MalI	GATC	4 cut(s)	26, 91, 225, 331
MboI	GATC	4 cut(s)	24, 89, 223, 329
MboII	GAAGA	3 cut(s)	32, 97, 118
MflI	RGATCY	3 cut(s)	24, 89, 223
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	1 cut(s)	415
MmeI	TCCRAC	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	289
MseI	TTAA	1 cut(s)	66
MspI	CCGG	3 cut(s)	290, 341, 350
Mva1269I	GAATGC	1 cut(s)	141
NaeI	GCCGGC	1 cut(s)	291
NdeII	GATC	4 cut(s)	24, 89, 223, 329
NgoMIV	GCCGGC	1 cut(s)	289
NlaIV	GGNNCC	3 cut(s)	154, 299, 348
NmeAIII	GCCGAG	1 cut(s)	290
PctI	GAATGC	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	4, 248
PinAI	ACCGGT	1 cut(s)	340
PpuMI	RGGWCCY	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	154, 299, 348
PspPI	GGNCC	1 cut(s)	297
PspPPI	RGGWCCY	1 cut(s)	297
PsuI	RGATCY	3 cut(s)	24, 89, 223
SaqAI	TTAA	1 cut(s)	66
Sau3AI	GATC	4 cut(s)	24, 89, 223, 329
Sau96I	GGNCC	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	5 cut(s)	161, 278, 299, 311, 371
SfaNI	GCATC	1 cut(s)	224
SgrAI	CRCCGGYG	1 cut(s)	340
SinI	GGWCC	1 cut(s)	297
Sse9I	AATT	1 cut(s)	415
SspMI	CTAG	2 cut(s)	38, 221
TaqI	TCGA	3 cut(s)	272, 374, 411
TasI	AATT	1 cut(s)	415
TfiI	GAWTC	2 cut(s)	4, 248
Tru1I	TTAA	1 cut(s)	66
Tru9I	TTAA	1 cut(s)	66
TscAI	CASTG	1 cut(s)	261
TspDTI	ATGAA	5 cut(s)	17, 118, 154, 229, 345
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	261
VneI	GTGCAC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	297
XspI	CTAG	2 cut(s)	38, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.