Rmu_sc0000064.1_g000015

SAM dependent carboxyl methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000064.1
OG0019814
Physical Location & Seq
Forward (+)
78748 .. 80402
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000064.1_g000015.1.cds

Sequence Viewer

Length: 1101 bp
atggtcagccatgccatggaagcacctatttttaaggctaccaaggacaaggataaaggcaagcagaaggttgttgagcaaccaaaaagaaaagtggggaggcctaggcaagagctaaaaaggacatataatactagaagtggtggtgagagttcaagtgctgcacctgctcaacagtggagttcagagagatatgattcggatgatccagagtatgaagactttgtggactcaaattatgacttggataatcaggaagacaaagagctgtttcaggggaatgttgatggggacactaacaaggtgccagaatatgaagaaatggggttcgatgtcgagatatcaaatgatggtgatgattctgatagaatgcataatgttcatgatacaaaagataagggagaggatactggaccttttagggtcaagggaaagaagagattcttgggttggctggagtttaatgcaaagacagatacgaagaatcccatgtttgcgcttggaatgattttccccaactctgatgtcttcaagcatgctgttcacgggtcaaggtcttactttgatgcgttcctgaaatgtgatgttatgttgaacaatcacagtgagtccttcaataagacttataagagcatccttgatgctaggaaaaagccaataatactatgtttggaggaaataaggtcagtagagttaagcgaatggagatttgaattgcatggtagaggtgtaggctgtcaaactggaaagaaatttatggagacatataaggtgatgctgcaaccaattgttgtagctcctgagtgggaagttatagagagatacattgcaccaccactgcacagaagacaaccaggaaggtccaggacaaaggaaccgggtgccaatgaaaatgttgaaccatctgtggcagaagctaatgttgaaaatgatgcgcccgatcaacagcaacctgcagctgaagatcaaatgccaacccaggaatcaaactttcaggctttatcagttttcagaaccatgtcaatcaacatgggactaagaatgtcaatgtcaatttcagagtcaatgcagatgttgaaggtgaaggtgacatttctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00592 ko01110 map00592 map01110
Pfam Domains
Protein Families
Methyltransf_7

Protein Analysis

366

Amino Acids

41.84

Weight (kDa)

5.47

Isoelectric Point (pI)

49.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 627
AarI CACCTGC 1 cut(s) 175
Acc36I ACCTGC 2 cut(s) 175, 961
AccB1I GGYRCC 2 cut(s) 304, 881
AccB7I CCANNNNNTGG 1 cut(s) 16
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 1 cut(s) 981
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 8 cut(s) 156, 532, 595, 616, 713, 899, 926, 1078
AjnI CCWGG 3 cut(s) 853, 863, 978
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 5 cut(s) 115, 268, 797, 917, 959
AluI AGCT 5 cut(s) 115, 268, 797, 917, 959
Alw26I GTCTC 1 cut(s) 755
AlwI GGATC 1 cut(s) 200
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 3 cut(s) 161, 778, 956
ApoI RAATTY 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 440
AspA2I CCTAGG 1 cut(s) 104
AspLEI GCGC 2 cut(s) 499, 937
AspS9I GGNCC 2 cut(s) 413, 861
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 5 cut(s) 158, 365, 784, 1093, 1099
AvaII GGWCC 2 cut(s) 413, 861
AvrII CCTAGG 1 cut(s) 104
BanI GGYRCC 2 cut(s) 304, 881
BbsI GAAGAC 4 cut(s) 225, 264, 520, 853
BbvI GCAGC 3 cut(s) 148, 765, 968
BccI CCATC 3 cut(s) 281, 344, 910
BciT130I CCWGG 3 cut(s) 855, 865, 980
BciVI GTATCC 1 cut(s) 400
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 755
BfaI CTAG 3 cut(s) 105, 135, 645
BfmI CTRYAG 1 cut(s) 954
BfuAI ACCTGC 2 cut(s) 175, 961
BfuI GTATCC 1 cut(s) 400
BisI GCNGC 3 cut(s) 162, 779, 957
BlnI CCTAGG 1 cut(s) 104
BlsI GCNGC 3 cut(s) 163, 780, 958
Bme1390I CCNGG 4 cut(s) 855, 865, 879, 980
Bme18I GGWCC 2 cut(s) 413, 861
BmgT120I GGNCC 2 cut(s) 413, 861
BmiI GGNNCC 3 cut(s) 306, 876, 883
BmrFI CCNGG 4 cut(s) 855, 865, 879, 980
BmsI GCATC 5 cut(s) 556, 631, 642, 765, 922
BpiI GAAGAC 4 cut(s) 225, 264, 520, 853
BpmI CTGGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 879
BsaJI CCNNGG 4 cut(s) 15, 42, 104, 978
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 415, 748
Bse3DI GCAATG 1 cut(s) 825
BseBI CCWGG 3 cut(s) 855, 865, 980
BseDI CCNNGG 4 cut(s) 15, 42, 104, 978
BseGI GGATG 2 cut(s) 208, 633
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMI GCAATG 1 cut(s) 825
BseMII CTCAG 1 cut(s) 792
BseNI ACTGG 2 cut(s) 415, 748
BseXI GCAGC 3 cut(s) 148, 765, 968
BsgI GTGCAG 2 cut(s) 147, 824
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 2 cut(s) 304, 881
BsiSI CCGG 1 cut(s) 878
BslFI GGGAC 2 cut(s) 305, 1047
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 755
BsmFI GGGAC 2 cut(s) 305, 1047
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 1 cut(s) 103
Bsp143I GATC 3 cut(s) 205, 940, 964
Bsp19I CCATGG 1 cut(s) 15
BspANI GGCC 1 cut(s) 103
BspCNI CTCAG 1 cut(s) 793
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 306, 876, 883
BspMAI CTGCAG 1 cut(s) 958
BspMI ACCTGC 2 cut(s) 175, 961
BspPI GGATC 1 cut(s) 200
BspT107I GGYRCC 2 cut(s) 304, 881
BsrDI GCAATG 1 cut(s) 825
BsrI ACTGG 2 cut(s) 415, 748
BssECI CCNNGG 4 cut(s) 15, 42, 104, 978
BssMI GATC 3 cut(s) 205, 940, 964
BssT1I CCWWGG 3 cut(s) 15, 42, 104
Bst2UI CCWGG 3 cut(s) 855, 865, 980
Bst4CI ACNGT 2 cut(s) 177, 605
Bst6I CTCTTC 1 cut(s) 431
BstC8I GCNNGC 2 cut(s) 62, 537
BstDEI CTNAG 2 cut(s) 801, 1037
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 208, 633
BstHHI GCGC 2 cut(s) 499, 937
BstKTI GATC 3 cut(s) 208, 943, 967
BstMAI GTCTC 1 cut(s) 755
BstMBI GATC 3 cut(s) 205, 940, 964
BstMWI GCNNNNNNNGC 2 cut(s) 20, 167
BstNI CCWGG 3 cut(s) 855, 865, 980
BstNSI RCATGY 1 cut(s) 539
BstSCI CCNGG 4 cut(s) 853, 863, 877, 978
BstSFI CTRYAG 1 cut(s) 954
BstV1I GCAGC 3 cut(s) 148, 765, 968
BstV2I GAAGAC 4 cut(s) 225, 264, 520, 853
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 1 cut(s) 103
BtgI CCRYGG 1 cut(s) 15
BtsCI GGATG 2 cut(s) 208, 633
BtsI GCAGTG 1 cut(s) 836
BtsIMutI CAGTG 3 cut(s) 182, 610, 836
BveI ACCTGC 2 cut(s) 175, 961
Cac8I GCNNGC 2 cut(s) 62, 537
CciI TCATGA 1 cut(s) 382
CfoI GCGC 2 cut(s) 499, 937
Cfr13I GGNCC 2 cut(s) 413, 861
CviAII CATG 8 cut(s) 11, 16, 383, 490, 536, 719, 1018, 1030
DdeI CTNAG 2 cut(s) 801, 1037
DpnI GATC 3 cut(s) 207, 942, 966
DpnII GATC 3 cut(s) 205, 940, 964
Eam1104I CTCTTC 1 cut(s) 431
EarI CTCTTC 1 cut(s) 431
Eco130I CCWWGG 3 cut(s) 15, 42, 104
Eco147I AGGCCT 1 cut(s) 103
Eco32I GATATC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 413, 861
Eco57I CTGAAG 1 cut(s) 981
EcoRII CCWGG 3 cut(s) 853, 863, 978
EcoRV GATATC 1 cut(s) 342
EcoT14I CCWWGG 3 cut(s) 15, 42, 104
EcoT22I ATGCAT 1 cut(s) 375
ErhI CCWWGG 3 cut(s) 15, 42, 104
FaeI CATG 8 cut(s) 14, 19, 386, 493, 539, 722, 1021, 1033
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 2 cut(s) 305, 1047
FatI CATG 8 cut(s) 10, 15, 382, 489, 535, 718, 1017, 1029
Fnu4HI GCNGC 3 cut(s) 162, 779, 957
FokI GGATG 2 cut(s) 215, 620
Fsp4HI GCNGC 3 cut(s) 162, 779, 957
FspBI CTAG 3 cut(s) 105, 135, 645
GlaI GCGC 2 cut(s) 498, 936
GluI GCNGC 3 cut(s) 162, 779, 957
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 1 cut(s) 103
HapII CCGG 1 cut(s) 878
HhaI GCGC 2 cut(s) 499, 937
Hin1II CATG 8 cut(s) 14, 19, 386, 493, 539, 722, 1021, 1033
Hin6I GCGC 2 cut(s) 497, 935
HinP1I GCGC 2 cut(s) 497, 935
HinfI GANTC 8 cut(s) 197, 230, 359, 441, 484, 608, 983, 1061
HpaII CCGG 1 cut(s) 878
HphI GGTGA 5 cut(s) 158, 365, 784, 1093, 1099
Hpy166II GTNNAC 2 cut(s) 229, 544
Hpy188I TCNGA 6 cut(s) 187, 202, 364, 523, 1013, 1060
Hpy188III TCNNGA 6 cut(s) 209, 254, 337, 383, 574, 800
Hpy8I GTNNAC 2 cut(s) 229, 544
HpyAV CCTTC 5 cut(s) 61, 622, 852, 1072, 1078
HpyCH4III ACNGT 2 cut(s) 177, 605
HpyCH4V TGCA 9 cut(s) 164, 373, 467, 718, 781, 830, 841, 956, 1069
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 167
HpyF3I CTNAG 2 cut(s) 801, 1037
Hsp92II CATG 8 cut(s) 14, 19, 386, 493, 539, 722, 1021, 1033
HspAI GCGC 2 cut(s) 497, 935
Kzo9I GATC 3 cut(s) 205, 940, 964
LmnI GCTCC 1 cut(s) 802
Lsp1109I GCAGC 3 cut(s) 148, 765, 968
LweI GCATC 5 cut(s) 556, 631, 642, 765, 922
MaeI CTAG 3 cut(s) 105, 135, 645
MaeIII GTNAC 1 cut(s) 1087
MalI GATC 3 cut(s) 207, 942, 966
MboI GATC 3 cut(s) 205, 940, 964
MboII GAAGA 8 cut(s) 230, 269, 329, 448, 493, 520, 858, 974
MfeI CAATTG 1 cut(s) 786
MluCI AATT 5 cut(s) 235, 713, 752, 786, 1053
MlyI GAGTC 3 cut(s) 224, 617, 1070
MnlI CCTC 4 cut(s) 93, 397, 667, 719
Mph1103I ATGCAT 1 cut(s) 375
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 3 cut(s) 33, 462, 695
MslI CAYNNNNRTG 1 cut(s) 1096
MspA1I CMGCKG 1 cut(s) 959
MspI CCGG 1 cut(s) 878
MspR9I CCNGG 4 cut(s) 855, 865, 879, 980
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 3 cut(s) 855, 865, 980
MwoI GCNNNNNNNGC 2 cut(s) 20, 167
NciI CCSGG 1 cut(s) 879
NcoI CCATGG 1 cut(s) 15
NdeII GATC 3 cut(s) 205, 940, 964
NlaIII CATG 8 cut(s) 14, 19, 386, 493, 539, 722, 1021, 1033
NlaIV GGNNCC 3 cut(s) 306, 876, 883
NmuCI GTSAC 1 cut(s) 1087
NsiI ATGCAT 1 cut(s) 375
NspI RCATGY 1 cut(s) 539
PaeI GCATGC 1 cut(s) 539
PagI TCATGA 1 cut(s) 382
PaqCI CACCTGC 1 cut(s) 175
PceI AGGCCT 1 cut(s) 103
PctI GAATGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 5 cut(s) 197, 359, 441, 484, 983
PflMI CCANNNNNTGG 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 863
PkrI GCNGC 3 cut(s) 163, 780, 958
PleI GAGTC 3 cut(s) 224, 616, 1069
PpsI GAGTC 3 cut(s) 224, 616, 1069
PsiI TTATAA 1 cut(s) 627
Psp6I CCWGG 3 cut(s) 853, 863, 978
PspGI CCWGG 3 cut(s) 853, 863, 978
PspN4I GGNNCC 3 cut(s) 306, 876, 883
PspPI GGNCC 2 cut(s) 413, 861
PstI CTGCAG 1 cut(s) 958
PvuII CAGCTG 1 cut(s) 959
RseI CAYNNNNRTG 1 cut(s) 1096
SaqAI TTAA 3 cut(s) 33, 462, 695
SatI GCNGC 3 cut(s) 162, 779, 957
Sau3AI GATC 3 cut(s) 205, 940, 964
Sau96I GGNCC 2 cut(s) 413, 861
SchI GAGTC 3 cut(s) 224, 617, 1070
ScrFI CCNGG 4 cut(s) 855, 865, 879, 980
SfaNI GCATC 5 cut(s) 556, 631, 642, 765, 922
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 2 cut(s) 413, 861
SmiMI CAYNNNNRTG 1 cut(s) 1096
SphI GCATGC 1 cut(s) 539
Sse9I AATT 5 cut(s) 235, 713, 752, 786, 1053
SseBI AGGCCT 1 cut(s) 103
SspMI CTAG 3 cut(s) 105, 135, 645
StuI AGGCCT 1 cut(s) 103
StyD4I CCNGG 4 cut(s) 853, 863, 877, 978
StyI CCWWGG 3 cut(s) 15, 42, 104
TaaI ACNGT 2 cut(s) 177, 605
TaqI TCGA 2 cut(s) 330, 336
TasI AATT 5 cut(s) 235, 713, 752, 786, 1053
TfiI GAWTC 5 cut(s) 197, 359, 441, 484, 983
Tru1I TTAA 3 cut(s) 33, 462, 695
Tru9I TTAA 3 cut(s) 33, 462, 695
TscAI CASTG 3 cut(s) 182, 610, 843
TseFI GTSAC 1 cut(s) 1087
TseI GCWGC 3 cut(s) 161, 778, 956
Tsp45I GTSAC 1 cut(s) 1087
TspDTI ATGAA 4 cut(s) 231, 330, 371, 903
TspRI CASTG 3 cut(s) 182, 610, 843
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 413, 861
XapI RAATTY 1 cut(s) 752
XceI RCATGY 1 cut(s) 539
XmaJI CCTAGG 1 cut(s) 104
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 3 cut(s) 105, 135, 645
Zsp2I ATGCAT 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.