Rmu_sc0035975.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0035975.1
OG0019814
Physical Location & Seq
Reverse (-)
78 .. 395
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0035975.1_g000001.1.cds

Sequence Viewer

Length: 318 bp
atgttttattctcatgttgatggtgatacaatgggggtaccagagtttgaggaaatgggttttgagggaaacataagtgatggaggtcctaaaggggatgattcagatggtttcactagtgcacatgagtctgacagtgaggggaatgatgttggtccttttagggtaaagggtaaacaaaggttcagtgactgggtggagtttaatgagaaggctgatatgaagactctaaggttctgtctaggaatggtgttccccaattcagcagtgtttaagcatgcagtgctaactaagaaggagctcaggtttcctagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

105

Amino Acids

11.71

Weight (kDa)

4.82

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 37
AfaI GTAC 1 cut(s) 39
AhlI ACTAGT 1 cut(s) 116
AluBI AGCT 2 cut(s) 301, 315
AluI AGCT 2 cut(s) 301, 315
Alw21I GWGCWC 2 cut(s) 124, 303
Alw44I GTGCAC 1 cut(s) 120
AlwNI CAGNNNCTG 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 86, 155
AsuHPI GGTGA 1 cut(s) 35
AvaII GGWCC 2 cut(s) 86, 155
BaeGI GKGCMC 1 cut(s) 124
BaeI ACNNNNGTAYC 2 cut(s) 29, 62
BanI GGYRCC 1 cut(s) 37
BanII GRGCYC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 2 cut(s) 124, 303
BccI CCATC 3 cut(s) 14, 74, 101
BcuI ACTAGT 1 cut(s) 116
BfaI CTAG 4 cut(s) 117, 242, 312, 316
Bme18I GGWCC 2 cut(s) 86, 155
BmgT120I GGNCC 2 cut(s) 86, 155
BmiI GGNNCC 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 230
Bpu10I CCTNAGC 1 cut(s) 302
BsaXI ACNNNNNCTCC 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 197
BseGI GGATG 1 cut(s) 103
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 124
BshNI GGYRCC 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 124, 303
Bsp1286I GDGCHC 2 cut(s) 124, 303
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 137
BstAPI GCANNNNNTGC 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 230, 291, 302
BstF5I GGATG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 281
BstSLI GKGCMC 1 cut(s) 124
BstV2I GAAGAC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 2 cut(s) 273, 288
BtsIMutI CAGTG 4 cut(s) 142, 193, 273, 288
Cac8I GCNNGC 1 cut(s) 279
CaiI CAGNNNCTG 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 86, 155
Csp6I GTAC 1 cut(s) 38
CviAII CATG 3 cut(s) 14, 125, 278
CviJI RGCY 3 cut(s) 215, 301, 315
CviKI_1 RGCY 3 cut(s) 215, 301, 315
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 3 cut(s) 230, 291, 302
Ecl136II GAGCTC 1 cut(s) 301
Eco24I GRGCYC 1 cut(s) 303
Eco47I GGWCC 2 cut(s) 86, 155
Eco53kI GAGCTC 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 303
FaeI CATG 3 cut(s) 17, 128, 281
FaiI YATR 5 cut(s) 15, 74, 126, 221, 279
FatI CATG 3 cut(s) 13, 124, 277
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 1 cut(s) 303
FspBI CTAG 4 cut(s) 117, 242, 312, 316
Hin1II CATG 3 cut(s) 17, 128, 281
HinfI GANTC 3 cut(s) 101, 128, 226
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 2 cut(s) 122, 176
Hpy188I TCNGA 2 cut(s) 106, 133
Hpy8I GTNNAC 2 cut(s) 122, 176
HpyAV CCTTC 2 cut(s) 205, 289
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 2 cut(s) 122, 281
HpyF10VI GCNNNNNNNGC 1 cut(s) 283
HpyF3I CTNAG 3 cut(s) 230, 291, 302
Hsp92II CATG 3 cut(s) 17, 128, 281
KpnI GGTACC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 3 cut(s) 54, 178, 289
MaeI CTAG 4 cut(s) 117, 242, 312, 316
MaeIII GTNAC 1 cut(s) 188
MboII GAAGA 1 cut(s) 235
MhlI GDGCHC 2 cut(s) 124, 303
MluCI AATT 1 cut(s) 259
MlyI GAGTC 2 cut(s) 137, 220
MnlI CCTC 4 cut(s) 43, 58, 77, 133
MseI TTAA 2 cut(s) 204, 273
MslI CAYNNNNRTG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 283
NlaIII CATG 3 cut(s) 17, 128, 281
NlaIV GGNNCC 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 281
PaeI GCATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 101
PleI GAGTC 2 cut(s) 136, 220
PpsI GAGTC 2 cut(s) 136, 220
PpuMI RGGWCCY 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 303
Psp5II RGGWCCY 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 2 cut(s) 86, 155
PspPPI RGGWCCY 1 cut(s) 86
PstNI CAGNNNCTG 1 cut(s) 192
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 18
SacI GAGCTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 204, 273
Sau96I GGNCC 2 cut(s) 86, 155
SchI GAGTC 2 cut(s) 137, 220
SduI GDGCHC 2 cut(s) 124, 303
SetI ASST 6 cut(s) 88, 185, 236, 303, 308, 317
SgeI CNNG 7 cut(s) 26, 53, 129, 137, 205, 254, 290
SinI GGWCC 2 cut(s) 86, 155
SmiMI CAYNNNNRTG 1 cut(s) 18
SpeI ACTAGT 1 cut(s) 116
SphI GCATGC 1 cut(s) 281
Sse9I AATT 1 cut(s) 259
SspMI CTAG 4 cut(s) 117, 242, 312, 316
SstI GAGCTC 1 cut(s) 303
TaaI ACNGT 1 cut(s) 137
TasI AATT 1 cut(s) 259
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 204, 273
Tru9I TTAA 2 cut(s) 204, 273
TscAI CASTG 4 cut(s) 142, 193, 273, 288
TseFI GTSAC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 4 cut(s) 142, 193, 273, 288
VneI GTGCAC 1 cut(s) 120
VpaK11BI GGWCC 2 cut(s) 86, 155
XceI RCATGY 1 cut(s) 281
XspI CTAG 4 cut(s) 117, 242, 312, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.