Rmu_sc0039054.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039054.1
OG0019814
Physical Location & Seq
Reverse (-)
164 .. 613
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039054.1_g000001.1.cds

Sequence Viewer

Length: 450 bp
ctgaagaggacctgtaatactagaagtggtggtgagagttcaagtgttgcagctgctcaacagtatagttcggagagtgatgattcagatgatccagagaatgatgacttcgtggactcagactatgacttggatgatcaggaagacgaggagctgttacagaggaatgttgatggggacactaataaggtgccagaatatgaagagatggcgtttggtggcgagatatcagattatggtgatgattctgatggaatgcagagtgttcatgattcaaatgatgagggagaagatactggaccttttagggtaaagggaaagaagagattctcgggttggccagagttcaatgcaaagacagatatgaagaatcccaagtttcagcttggaatgattttctccaactctgaggtcttcaagcatgaagtgttgaccaagaaagagctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

149

Amino Acids

16.74

Weight (kDa)

4.18

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 190
AclWI GGATC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 23
AgsI TTSAA 4 cut(s) 42, 276, 349, 418
AluBI AGCT 4 cut(s) 53, 154, 385, 445
AluI AGCT 4 cut(s) 53, 154, 385, 445
AlwI GGATC 1 cut(s) 86
Ama87I CYCGRG 1 cut(s) 331
AoxI GGCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 50, 53
Asp700I GAANNNNTTC 1 cut(s) 326
AspS9I GGNCC 2 cut(s) 9, 299
AsuHPI GGTGA 2 cut(s) 44, 251
AvaI CYCGRG 1 cut(s) 331
AvaII GGWCC 2 cut(s) 9, 299
BalI TGGCCA 1 cut(s) 340
BanI GGYRCC 1 cut(s) 190
BbsI GAAGAC 2 cut(s) 150, 406
BbvI GCAGC 2 cut(s) 40, 62
BccI CCATC 3 cut(s) 167, 202, 245
BclI TGATCA 1 cut(s) 136
BfaI CTAG 1 cut(s) 21
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme18I GGWCC 2 cut(s) 9, 299
BmeT110I CYCGRG 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 9, 299
BmiI GGNNCC 1 cut(s) 192
BpiI GAAGAC 2 cut(s) 150, 406
Bse1I ACTGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 132, 399
BseNI ACTGG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 2 cut(s) 40, 62
BshFI GGCC 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 190
BsiHKCI CYCGRG 1 cut(s) 331
BslFI GGGAC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 331
Bsp143I GATC 2 cut(s) 91, 136
BspANI GGCC 1 cut(s) 340
BspCNI CTCAG 2 cut(s) 131, 400
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 86
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 301
BssMI GATC 2 cut(s) 91, 136
Bst4CI ACNGT 1 cut(s) 63
Bst6I CTCTTC 2 cut(s) 198, 317
BstDEI CTNAG 2 cut(s) 118, 408
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 2 cut(s) 94, 139
BstMBI GATC 2 cut(s) 91, 136
BstV1I GCAGC 2 cut(s) 40, 62
BstV2I GAAGAC 2 cut(s) 150, 406
BsuRI GGCC 1 cut(s) 340
BtsCI GGATG 1 cut(s) 139
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 9, 299
CviAII CATG 2 cut(s) 269, 422
CviJI RGCY 5 cut(s) 53, 154, 340, 385, 445
CviKI_1 RGCY 5 cut(s) 53, 154, 340, 385, 445
DdeI CTNAG 2 cut(s) 118, 408
DpnI GATC 2 cut(s) 93, 138
DpnII GATC 2 cut(s) 91, 136
EaeI YGGCCR 1 cut(s) 338
Eam1104I CTCTTC 2 cut(s) 198, 317
EarI CTCTTC 2 cut(s) 198, 317
Eco32I GATATC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 9, 299
Eco57I CTGAAG 1 cut(s) 23
Eco88I CYCGRG 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 9
EcoRV GATATC 1 cut(s) 228
FaeI CATG 2 cut(s) 272, 425
FaiI YATR 7 cut(s) 66, 126, 201, 237, 270, 365, 423
FaqI GGGAC 1 cut(s) 191
FatI CATG 2 cut(s) 268, 421
FbaI TGATCA 1 cut(s) 136
Fnu4HI GCNGC 2 cut(s) 51, 54
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 2 cut(s) 51, 54
FspBI CTAG 1 cut(s) 21
GluI GCNGC 2 cut(s) 51, 54
HaeIII GGCC 1 cut(s) 340
Hin1II CATG 2 cut(s) 272, 425
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 6 cut(s) 83, 116, 245, 272, 327, 370
HphI GGTGA 2 cut(s) 44, 251
Hpy166II GTNNAC 2 cut(s) 115, 432
Hpy188I TCNGA 6 cut(s) 73, 88, 121, 232, 250, 409
Hpy188III TCNNGA 3 cut(s) 95, 140, 269
Hpy8I GTNNAC 2 cut(s) 115, 432
HpyCH4III ACNGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 50, 259, 353
HpyF3I CTNAG 2 cut(s) 118, 408
Hsp92II CATG 2 cut(s) 272, 425
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 2 cut(s) 91, 136
LmnI GCTCC 1 cut(s) 151
LpnPI CCDG 6 cut(s) 25, 108, 125, 207, 282, 354
Lsp1109I GCAGC 2 cut(s) 40, 62
MaeI CTAG 1 cut(s) 21
MaeIII GTNAC 1 cut(s) 156
MalI GATC 2 cut(s) 93, 138
MboI GATC 2 cut(s) 91, 136
MboII GAAGA 7 cut(s) 16, 155, 215, 302, 334, 379, 406
MlsI TGGCCA 1 cut(s) 340
MluNI TGGCCA 1 cut(s) 340
MlyI GAGTC 1 cut(s) 110
MmeI TCCRAC 1 cut(s) 426
MnlI CCTC 4 cut(s) 142, 156, 277, 403
Mox20I TGGCCA 1 cut(s) 340
MroXI GAANNNNTTC 1 cut(s) 326
MscI TGGCCA 1 cut(s) 340
Msp20I TGGCCA 1 cut(s) 340
MspA1I CMGCKG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 261
NdeII GATC 2 cut(s) 91, 136
NlaIII CATG 2 cut(s) 272, 425
NlaIV GGNNCC 1 cut(s) 192
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 5 cut(s) 83, 245, 272, 327, 370
PkrI GCNGC 2 cut(s) 52, 55
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PpuMI RGGWCCY 1 cut(s) 9
Psp5II RGGWCCY 1 cut(s) 9
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 9, 299
PspPPI RGGWCCY 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 53
SatI GCNGC 2 cut(s) 51, 54
Sau3AI GATC 2 cut(s) 91, 136
Sau96I GGNCC 2 cut(s) 9, 299
SchI GAGTC 1 cut(s) 110
SetI ASST 8 cut(s) 14, 55, 156, 192, 304, 387, 414, 447
SinI GGWCC 2 cut(s) 9, 299
SspMI CTAG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 63
TfiI GAWTC 5 cut(s) 83, 245, 272, 327, 370
TseI GCWGC 2 cut(s) 50, 53
TspDTI ATGAA 4 cut(s) 216, 257, 380, 438
VpaK11BI GGWCC 2 cut(s) 9, 299
XmnI GAANNNNTTC 1 cut(s) 326
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.