Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000084.1

Orthogroup ID

OG0019735

Physical Location & Seq

Genomic Coordinates Forward (+)

172918 .. 173490

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atgaaatctgatacatttataaaacatgacaagtcttgctgtgatgtgatggattttgggtttaatttgatgtactattgtacttttgtaatgtgtgtggcaaagtttgtggtggtattcctgtttggtgtaaatctgcattctaaagatttcatagataactgcaactcactggtggttattacagagacaatatcatgtgaagttcaagaggatactggaacatggcgtgaaagacttcagaaatggaaggagatcctccaaaaagaaaagttagcggaacagttggactctgcaaattccaagtatgtagttgaatttgacatgaaagaggttgaaaacagtcttcgcaaggatgtagtggagaaggtaacagagacacaaggaaaagggcgttatggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004176 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019538 GO:0031967 GO:0031975 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA Peptidase_M41

Protein Analysis

134

Amino Acids

15.59

Weight (kDa)

5.24

Isoelectric Point (pI)

29.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019735)

Species	Orthologous Gene IDs
malus_domestica	MD10G1209400.v1.1
rosa_multiflora	Rmu_sc0000084.1_g000041 Rmu_sc0000851.1_g000001 Rmu_sc0001307.1_g000022
rosa_roxburghii	Rroxscaffold_7G00195670
rosa_samantha	Rh6DG222600
rosa_wichuraiana	Rw1G017720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	20
AciI	CCGC	1 cut(s)	278
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	298, 317
AcuI	CTGAAG	1 cut(s)	224
AfaI	GTAC	2 cut(s)	74, 82
AgsI	TTSAA	3 cut(s)	209, 317, 338
Alw26I	GTCTC	2 cut(s)	182, 371
AlwI	GGATC	1 cut(s)	250
ApoI	RAATTY	2 cut(s)	298, 317
Asp700I	GAANNNNTTC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	338
BccI	CCATC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	182, 371
BfuI	GTATCC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	177, 223
BseGI	GGATG	1 cut(s)	361
BseNI	ACTGG	2 cut(s)	177, 223
BsmAI	GTCTC	2 cut(s)	182, 371
BsmI	GAATGC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	255
BspACI	CCGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	250
BsrI	ACTGG	2 cut(s)	177, 223
BssMI	GATC	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	285, 344
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	1 cut(s)	258
BstMAI	GTCTC	2 cut(s)	182, 371
BstMBI	GATC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	338
BstX2I	RGATCY	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	208
BtsCI	GGATG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	170
Csp6I	GTAC	2 cut(s)	73, 81
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	4 cut(s)	26, 198, 225, 325
CviQI	GTAC	2 cut(s)	73, 81
DpnI	GATC	1 cut(s)	257
DpnII	GATC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	224
FaeI	CATG	4 cut(s)	29, 201, 228, 328
FaiI	YATR	8 cut(s)	20, 27, 155, 199, 226, 309, 326, 399
FatI	CATG	4 cut(s)	25, 197, 224, 324
FokI	GGATG	1 cut(s)	368
Hin1II	CATG	4 cut(s)	29, 201, 228, 328
HinfI	GANTC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	10, 243
Hpy188III	TCNNGA	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	244, 361
HpyCH4III	ACNGT	2 cut(s)	285, 344
HpyCH4V	TGCA	3 cut(s)	139, 165, 296
Hsp92II	CATG	4 cut(s)	29, 201, 228, 328
Kzo9I	GATC	1 cut(s)	255
LpnPI	CCDG	3 cut(s)	134, 158, 204
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	257
MboI	GATC	1 cut(s)	255
MboII	GAAGA	1 cut(s)	338
MflI	RGATCY	1 cut(s)	255
MluCI	AATT	3 cut(s)	64, 298, 317
MlyI	GAGTC	1 cut(s)	284
MmeI	TCCRAC	1 cut(s)	267
MnlI	CCTC	3 cut(s)	205, 269, 325
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	255
NlaIII	CATG	4 cut(s)	29, 201, 228, 328
PctI	GAATGC	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	255
RsaI	GTAC	2 cut(s)	74, 82
RsaNI	GTAC	2 cut(s)	73, 81
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	1 cut(s)	255
SchI	GAGTC	1 cut(s)	284
SetI	ASST	2 cut(s)	336, 372
Sse9I	AATT	3 cut(s)	64, 298, 317
SsiI	CCGC	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	285, 344
TasI	AATT	3 cut(s)	64, 298, 317
TatI	WGTACW	2 cut(s)	72, 80
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	177
TspDTI	ATGAA	3 cut(s)	17, 142, 341
TspRI	CASTG	1 cut(s)	177
XapI	RAATTY	2 cut(s)	298, 317
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.