ribonuclease H protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0329231 |
| rosa_laevigata | RLG00000029908 |
| rosa_multiflora | Rmu_sc0000156.1_g000010 Rmu_sc0014673.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00140680 Rroxscaffold_4G00278730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 48, 156 |
| AciI | CCGC | 2 cut(s) | 245, 351 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 17, 244 |
| AgsI | TTSAA | 1 cut(s) | 392 |
| AluBI | AGCT | 2 cut(s) | 221, 397 |
| AluI | AGCT | 2 cut(s) | 221, 397 |
| Alw21I | GWGCWC | 1 cut(s) | 321 |
| AoxI | GGCC | 1 cut(s) | 8 |
| AspA2I | CCTAGG | 1 cut(s) | 11 |
| AsuHPI | GGTGA | 1 cut(s) | 82 |
| AsuNHI | GCTAGC | 1 cut(s) | 347 |
| AvrII | CCTAGG | 1 cut(s) | 11 |
| BaeGI | GKGCMC | 1 cut(s) | 26 |
| Bbv12I | GWGCWC | 1 cut(s) | 321 |
| BccI | CCATC | 1 cut(s) | 376 |
| BclI | TGATCA | 1 cut(s) | 94 |
| BfaI | CTAG | 3 cut(s) | 12, 348, 413 |
| BisI | GCNGC | 1 cut(s) | 246 |
| BlnI | CCTAGG | 1 cut(s) | 11 |
| BlsI | GCNGC | 1 cut(s) | 247 |
| BmtI | GCTAGC | 1 cut(s) | 351 |
| BpmI | CTGGAG | 2 cut(s) | 184, 235 |
| BpuEI | CTTGAG | 1 cut(s) | 127 |
| BsaJI | CCNNGG | 2 cut(s) | 5, 11 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 208, 238 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 17, 244 |
| BseDI | CCNNGG | 2 cut(s) | 5, 11 |
| BseGI | GGATG | 2 cut(s) | 387, 391 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 17, 244 |
| BseSI | GKGCMC | 1 cut(s) | 26 |
| BshFI | GGCC | 1 cut(s) | 10 |
| BsiHKAI | GWGCWC | 1 cut(s) | 321 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 17, 244 |
| BsnI | GGCC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 2 cut(s) | 26, 321 |
| Bsp143I | GATC | 2 cut(s) | 94, 198 |
| BspACI | CCGC | 2 cut(s) | 245, 351 |
| BspANI | GGCC | 1 cut(s) | 10 |
| BspOI | GCTAGC | 1 cut(s) | 351 |
| BssECI | CCNNGG | 2 cut(s) | 5, 11 |
| BssMI | GATC | 2 cut(s) | 94, 198 |
| BssT1I | CCWWGG | 2 cut(s) | 5, 11 |
| BstC8I | GCNNGC | 1 cut(s) | 349 |
| BstF5I | GGATG | 2 cut(s) | 387, 391 |
| BstKTI | GATC | 2 cut(s) | 97, 201 |
| BstMBI | GATC | 2 cut(s) | 94, 198 |
| BstSLI | GKGCMC | 1 cut(s) | 26 |
| BsuRI | GGCC | 1 cut(s) | 10 |
| BtsCI | GGATG | 2 cut(s) | 387, 391 |
| BtsI | GCAGTG | 1 cut(s) | 310 |
| BtsIMutI | CAGTG | 1 cut(s) | 310 |
| Cac8I | GCNNGC | 1 cut(s) | 349 |
| CviAII | CATG | 2 cut(s) | 240, 323 |
| CviJI | RGCY | 9 cut(s) | 10, 81, 124, 141, 162, 221, 347, 397, 409 |
| CviKI_1 | RGCY | 9 cut(s) | 10, 81, 124, 141, 162, 221, 347, 397, 409 |
| DpnI | GATC | 2 cut(s) | 96, 200 |
| DpnII | GATC | 2 cut(s) | 94, 198 |
| Eco130I | CCWWGG | 2 cut(s) | 5, 11 |
| EcoT14I | CCWWGG | 2 cut(s) | 5, 11 |
| EcoT22I | ATGCAT | 1 cut(s) | 328 |
| ErhI | CCWWGG | 2 cut(s) | 5, 11 |
| FaeI | CATG | 2 cut(s) | 243, 326 |
| FaiI | YATR | 7 cut(s) | 48, 156, 241, 271, 324, 331, 344 |
| FatI | CATG | 2 cut(s) | 239, 322 |
| FauI | CCCGC | 1 cut(s) | 344 |
| FbaI | TGATCA | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 1 cut(s) | 246 |
| FokI | GGATG | 2 cut(s) | 394, 398 |
| Fsp4HI | GCNGC | 1 cut(s) | 246 |
| FspBI | CTAG | 3 cut(s) | 12, 348, 413 |
| GluI | GCNGC | 1 cut(s) | 246 |
| GsuI | CTGGAG | 2 cut(s) | 184, 235 |
| HaeIII | GGCC | 1 cut(s) | 10 |
| Hin1II | CATG | 2 cut(s) | 243, 326 |
| HinfI | GANTC | 1 cut(s) | 63 |
| HphI | GGTGA | 1 cut(s) | 82 |
| Hpy188I | TCNGA | 3 cut(s) | 99, 373, 381 |
| Hpy188III | TCNNGA | 2 cut(s) | 132, 214 |
| HpyAV | CCTTC | 3 cut(s) | 106, 258, 284 |
| HpyCH4V | TGCA | 2 cut(s) | 303, 326 |
| Hsp92II | CATG | 2 cut(s) | 243, 326 |
| Ksp22I | TGATCA | 1 cut(s) | 94 |
| Kzo9I | GATC | 2 cut(s) | 94, 198 |
| LmnI | GCTCC | 1 cut(s) | 324 |
| LpnPI | CCDG | 5 cut(s) | 63, 117, 148, 199, 390 |
| MaeI | CTAG | 3 cut(s) | 12, 348, 413 |
| MalI | GATC | 2 cut(s) | 96, 200 |
| MboI | GATC | 2 cut(s) | 94, 198 |
| MboII | GAAGA | 2 cut(s) | 112, 273 |
| MhlI | GDGCHC | 2 cut(s) | 26, 321 |
| MluCI | AATT | 1 cut(s) | 151 |
| MnlI | CCTC | 4 cut(s) | 109, 221, 301, 373 |
| Mph1103I | ATGCAT | 1 cut(s) | 328 |
| MseI | TTAA | 3 cut(s) | 107, 182, 427 |
| NdeII | GATC | 2 cut(s) | 94, 198 |
| NheI | GCTAGC | 1 cut(s) | 347 |
| NlaIII | CATG | 2 cut(s) | 243, 326 |
| NsiI | ATGCAT | 1 cut(s) | 328 |
| PfeI | GAWTC | 1 cut(s) | 63 |
| PkrI | GCNGC | 1 cut(s) | 247 |
| PsiI | TTATAA | 2 cut(s) | 48, 156 |
| SaqAI | TTAA | 3 cut(s) | 107, 182, 427 |
| SatI | GCNGC | 1 cut(s) | 246 |
| Sau3AI | GATC | 2 cut(s) | 94, 198 |
| SduI | GDGCHC | 2 cut(s) | 26, 321 |
| SetI | ASST | 3 cut(s) | 223, 295, 399 |
| SmlI | CTYRAG | 1 cut(s) | 142 |
| SmoI | CTYRAG | 1 cut(s) | 142 |
| Sse9I | AATT | 1 cut(s) | 151 |
| SsiI | CCGC | 2 cut(s) | 245, 351 |
| SspMI | CTAG | 3 cut(s) | 12, 348, 413 |
| StyI | CCWWGG | 2 cut(s) | 5, 11 |
| TasI | AATT | 1 cut(s) | 151 |
| TauI | GCSGC | 1 cut(s) | 248 |
| TfiI | GAWTC | 1 cut(s) | 63 |
| Tru1I | TTAA | 3 cut(s) | 107, 182, 427 |
| Tru9I | TTAA | 3 cut(s) | 107, 182, 427 |
| TscAI | CASTG | 1 cut(s) | 310 |
| TspRI | CASTG | 1 cut(s) | 310 |
| XmaJI | CCTAGG | 1 cut(s) | 11 |
| XspI | CTAG | 3 cut(s) | 12, 348, 413 |
| Zsp2I | ATGCAT | 1 cut(s) | 328 |